Cla004399 (gene) Watermelon (97103) v1

Overview
NameCla004399
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionNuclear transcription factor Y subunit C-2 (AHRD V1 *-*- B4FLF9_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone
LocationChr9 : 26405901 .. 26406701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

mRNA sequence

ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

Coding sequence (CDS)

ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

Protein sequence

MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA
Homology
[Close]
BLAST of Cla004399 vs. Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2)

HSP 1 Score: 278.9 bits (712), Expect = 5.9e-74
Identity = 151/216 (69.91%), Postives = 161/216 (74.54%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQPAGGVSAGQLPYSNP--YQTAPMVASGTPAITIPPTQPPSSFSNS 60
           M+QSE  Q QQQ          G + Y  P  YQ+ P+                    N+
Sbjct: 1   MEQSEEGQQQQQQ---------GVMDYVPPHAYQSGPV--------------------NA 60

Query: 61  PHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120
              +A+QQA HFHH  QQQQQQQLQMFWANQMQEIE TTDFKNH+LPLARIKKIMKADED
Sbjct: 61  ASHMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADED 120

Query: 121 VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180
           VRMISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI
Sbjct: 121 VRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180

Query: 181 IPRDELKEEGLGITKGSIP-VVGSPADLPYYYVPSQ 214
           IPRDELKEEGLG+TKG+IP VVGSP   PYYY+  Q
Sbjct: 181 IPRDELKEEGLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]
BLAST of Cla004399 vs. Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64
Identity = 146/258 (56.59%), Postives = 175/258 (67.83%), Query Frame = 1 

Query: 11  QQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ    +G ++ G    +NPYQT PM    T A T+      +  +  P QLA+ Q    
Sbjct: 3   QQDHGQSGAMNYG----TNPYQTNPM---STTAATV------AGGAAQPGQLAFHQI--- 62

Query: 71  HHQQQQQQQ--QQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 130
            HQQQQQQQ  QQLQ FW NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 63  -HQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 122

Query: 131 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 190
           +FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E 
Sbjct: 123 VFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 182

Query: 191 LG-ITKGSIPVVGSPADLPYYYVPS-QHPVGATGMIMGKQLDQANMYGATAQHPRPSMPF 250
           LG I +G++P   + A  PY Y+P+   P+G  GM+MG      N  GA      P  P+
Sbjct: 183 LGSIPRGTVPEAAA-AGYPYGYLPAGTAPIGNPGMVMG------NPGGA-----YPPNPY 231

Query: 251 MPWPHTQPQQQQQTQQQS 265
           M  P  Q Q   Q  Q++
Sbjct: 243 MGQPMWQQQAPDQPDQEN 231

[Close]
BLAST of Cla004399 vs. Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-59
Identity = 131/231 (56.71%), Postives = 148/231 (64.07%), Query Frame = 1 

Query: 28  SNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWA 87
           SNPYQT  M            T P  S   + HQ+        H QQQQQ  QQLQ FW 
Sbjct: 14  SNPYQTNAMT-----------TTPTGSDHPAYHQI--------HQQQQQQLTQQLQSFWE 73

Query: 88  NQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWI 147
            Q +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW 
Sbjct: 74  TQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWN 133

Query: 148 HTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPY 207
           HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG   G      + A  PY
Sbjct: 134 HTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG---GVGAEAATAAGYPY 193

Query: 208 YYV-PSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQ 258
            Y+ P   P+G  GM+MG            A  P P M    W    P+QQ
Sbjct: 194 GYLPPGTAPIGNPGMVMG---------NPGAYPPNPYMGQPMWQQPGPEQQ 213

[Close]
BLAST of Cla004399 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-58
Identity = 118/198 (59.60%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 43  AITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNH 102
           A  IPP  P ++ S +    +Y       H   QQQQQQLQ+FW  Q QEIEQ  DFKNH
Sbjct: 12  AAGIPPPPPGTTISAAGGGASY-------HHLLQQQQQQLQLFWTYQRQEIEQVNDFKNH 71

Query: 103 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 162
            LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDI
Sbjct: 72  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 131

Query: 163 AAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMI 222
           AAAI+RTD+FDFLVDI+PRDE+K+E   +  G + V  + + +PYYY P   P G  GM+
Sbjct: 132 AAAITRTDIFDFLVDIVPRDEIKDEA-AVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMM 191

Query: 223 MGKQLDQANMYGATAQHP 241
           +G+     N  G   Q P
Sbjct: 192 IGRPAMDPN--GVYVQPP 199

[Close]
BLAST of Cla004399 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.6e-56
Identity = 116/197 (58.88%), Postives = 137/197 (69.54%), Query Frame = 1 

Query: 40  GTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDF 99
           G+   T+ P  P  S S     +       +HH   QQQQQQLQMFW  Q QEIEQ  DF
Sbjct: 21  GSAVTTVIPPPPSGSAS-----IVTGGGATYHHLL-QQQQQQLQMFWTYQRQEIEQVNDF 80

Query: 100 KNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQK 159
           KNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQK
Sbjct: 81  KNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQK 140

Query: 160 NDIAAAISRTDVFDFLVDIIPRDELKEE--GLGITKGSIPVVGSPADLPYYYVPSQHPVG 219
           NDIAAAI+RTD+FDFLVDI+PR+E+KEE        G   V  + + +PYYY P   P  
Sbjct: 141 NDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPAV 200

Query: 220 ATGMIMGK-QLDQANMY 234
             GM++G+  +D + +Y
Sbjct: 201 PGGMMIGRPAMDPSGVY 211

[Close]
BLAST of Cla004399 vs. TrEMBL
Match: A0A0A0K5U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051420 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 3.3e-148
Identity = 260/265 (98.11%), Postives = 261/265 (98.49%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGV AGQL YSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQ P
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 266
           RPSMPFMPWPHTQPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]
BLAST of Cla004399 vs. TrEMBL
Match: B9RHZ1_RICCO (Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_1574650 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 7.7e-121
Identity = 228/272 (83.82%), Postives = 237/272 (87.13%), Query Frame = 1 

Query: 1   MDQSERSQHQQQ-SQQPAGGV--SAGQLPYSN-PYQTAPMVASGTPAITIP-PTQPPSSF 60
           MDQSE+ Q QQQ SQQP  GV   AGQ+ YS  PYQT  M+ASG PAI +P PTQPPSSF
Sbjct: 1   MDQSEQGQQQQQQSQQPVMGVVAGAGQMAYSTAPYQTTAMMASGAPAIAVPSPTQPPSSF 60

Query: 61  SNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKA 120
           SNSPHQL YQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQT DFKNHSLPLARIKKIMKA
Sbjct: 61  SNSPHQLTYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTMDFKNHSLPLARIKKIMKA 120

Query: 121 DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 180
           DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL
Sbjct: 121 DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 180

Query: 181 VDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGA 240
           VDIIPRDELKEEGLG+TK +IP+VGSPAD+PYYYVP QHPVG  GMIMGK +DQA  YG 
Sbjct: 181 VDIIPRDELKEEGLGVTKATIPMVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAAGYGG 240

Query: 241 TAQHPRPSMPFMPWPHTQPQQQQQ--TQQQSD 266
             Q PRP M FMPWP TQPQQQQQ   QQQSD
Sbjct: 241 -QQQPRPPMAFMPWPQTQPQQQQQQPQQQQSD 271

[Close]
BLAST of Cla004399 vs. TrEMBL
Match: W9QHS7_9ROSA (Nuclear transcription factor Y subunit C-2 OS=Morus notabilis GN=L484_004059 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 3.8e-120
Identity = 220/264 (83.33%), Postives = 232/264 (87.88%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPP-TQPPSSFSNSP 60
           MDQSE++Q QQQ QQP  G+ AG  P S  YQTAPMVASG PA  +P  TQ P++FSNSP
Sbjct: 1   MDQSEQTQQQQQQQQPVVGMVAGYAPQS--YQTAPMVASGAPAAPVPSQTQAPATFSNSP 60

Query: 61  HQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDV 120
           HQLAYQQAQHFHHQQQQQQQQQLQMFW NQMQEIEQT DFKNHSLPLARIKKIMKADEDV
Sbjct: 61  HQLAYQQAQHFHHQQQQQQQQQLQMFWVNQMQEIEQTADFKNHSLPLARIKKIMKADEDV 120

Query: 121 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 180
           RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII
Sbjct: 121 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 180

Query: 181 PRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQH 240
           PRDELKEEGLG+TK ++PVVGSPAD+PYYYVP QHPVG TGMIMGK +DQA MY   AQ 
Sbjct: 181 PRDELKEEGLGVTKATLPVVGSPADMPYYYVPPQHPVGPTGMIMGKPVDQAAMY--AAQQ 240

Query: 241 PRPSMPFMPWPHTQPQQQQQTQQQ 264
           PRP M F+PWP TQPQQQQQ Q Q
Sbjct: 241 PRPPMAFVPWPQTQPQQQQQQQPQ 260

[Close]
BLAST of Cla004399 vs. TrEMBL
Match: A0A061FB94_THECC (Nuclear transcription factor Y subunit C-2 isoform 1 OS=Theobroma cacao GN=TCM_033437 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 3.2e-119
Identity = 224/278 (80.58%), Postives = 239/278 (85.97%), Query Frame = 1 

Query: 1   MDQSERSQ--------HQQQSQQPAGGV--SAGQLPYSN-PYQTAPMVASGTPAITIP-P 60
           MDQSE++Q        HQQ  QQP  GV   AGQ+ YS  PY TA MVASGTPA+ +P P
Sbjct: 1   MDQSEQTQQQHQHQQQHQQHQQQPVMGVVPGAGQMGYSTGPYHTASMVASGTPAVAVPSP 60

Query: 61  TQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR 120
           TQPP++FS+SPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR
Sbjct: 61  TQPPTTFSSSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR 120

Query: 121 IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 180
           IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR
Sbjct: 121 IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 180

Query: 181 TDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLD 240
           TDVFDFLVDIIPRDELKEEGLG+TK +IP+VGSPAD+PYYYVP QHPVG TGMIMGK +D
Sbjct: 181 TDVFDFLVDIIPRDELKEEGLGVTKATIPLVGSPADIPYYYVP-QHPVGPTGMIMGKPVD 240

Query: 241 QANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 267
           QA +Y    Q  RP M FMPWP  QPQQQQ  QQQSD+
Sbjct: 241 QATLY--PGQQARPPMAFMPWPQGQPQQQQSQQQQSDS 275

[Close]
BLAST of Cla004399 vs. TrEMBL
Match: A0A067JQF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22608 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 9.4e-119
Identity = 220/273 (80.59%), Postives = 238/273 (87.18%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQ----PAGGVSAG--QLPYSN-PYQTAPMVASGTPAITIPP-TQPP 60
           MDQSE++Q QQQ QQ    P  GV AG  Q+ Y+  PYQTA M+ASGTPA+ +P  TQ P
Sbjct: 1   MDQSEQTQQQQQQQQSQQLPVMGVVAGAAQMAYTTTPYQTAGMMASGTPAMAVPSSTQAP 60

Query: 61  SSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKI 120
           S++SNSPHQL YQQAQHFHHQQQQQQQQQLQMFWANQMQE+EQTTDFKNHSLPLARIKKI
Sbjct: 61  STYSNSPHQLTYQQAQHFHHQQQQQQQQQLQMFWANQMQEVEQTTDFKNHSLPLARIKKI 120

Query: 121 MKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF 180
           MKADEDVRMISAEAPVIFAKACEMF+LELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF
Sbjct: 121 MKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVF 180

Query: 181 DFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANM 240
           DFLVDIIPRDELKEEGLG+TK +IP+VGSPAD+PYYYVP QHPVG  GMIMGK +DQA +
Sbjct: 181 DFLVDIIPRDELKEEGLGVTKATIPMVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAAV 240

Query: 241 YGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSD 266
           YG  AQ PRP + FMPWP  QPQQQQ  QQQSD
Sbjct: 241 YG--AQQPRPPVAFMPWPQNQPQQQQPQQQQSD 271

[Close]
BLAST of Cla004399 vs. NCBI nr
Match: gi|449438149|ref|XP_004136852.1| (PREDICTED: nuclear transcription factor Y subunit C-2 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 4.7e-148
Identity = 260/265 (98.11%), Postives = 261/265 (98.49%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGV AGQL YSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQ P
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 266
           RPSMPFMPWPHTQPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]
BLAST of Cla004399 vs. NCBI nr
Match: gi|1009129970|ref|XP_015882049.1| (PREDICTED: nuclear transcription factor Y subunit C-2 [Ziziphus jujuba])

HSP 1 Score: 445.3 bits (1144), Expect = 7.6e-122
Identity = 223/267 (83.52%), Postives = 238/267 (89.14%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQP--AGGVSAGQLPYSNP-YQTAPMVASGTPAITIP-PTQPPSSFS 60
           MDQS ++Q Q Q  QP   G V+  Q+ Y+ P YQTAPMVASGTPA+ +P PTQPP++FS
Sbjct: 1   MDQSGQAQQQHQQPQPPVVGVVTGAQMTYAPPSYQTAPMVASGTPAVAVPSPTQPPTTFS 60

Query: 61  NSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKAD 120
           NSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQT+DFKNHSLPLARIKKIMKAD
Sbjct: 61  NSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTSDFKNHSLPLARIKKIMKAD 120

Query: 121 EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 180
           EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV
Sbjct: 121 EDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 180

Query: 181 DIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAT 240
           DIIPRDELKEEGLG+TK +IPVVGSPAD+PYYYVP QHPVG TGMIMGK +DQA MY   
Sbjct: 181 DIIPRDELKEEGLGVTKATIPVVGSPADIPYYYVPPQHPVGPTGMIMGKPVDQAAMY--A 240

Query: 241 AQHPRPSMPFMPWPHTQPQQQQQTQQQ 264
           AQ PRP M F+PWP TQPQQQQQ QQQ
Sbjct: 241 AQQPRPPMAFVPWPQTQPQQQQQQQQQ 265

[Close]
BLAST of Cla004399 vs. NCBI nr
Match: gi|255544598|ref|XP_002513360.1| (PREDICTED: nuclear transcription factor Y subunit C-2 [Ricinus communis])

HSP 1 Score: 441.4 bits (1134), Expect = 1.1e-120
Identity = 228/272 (83.82%), Postives = 237/272 (87.13%), Query Frame = 1 

Query: 1   MDQSERSQHQQQ-SQQPAGGV--SAGQLPYSN-PYQTAPMVASGTPAITIP-PTQPPSSF 60
           MDQSE+ Q QQQ SQQP  GV   AGQ+ YS  PYQT  M+ASG PAI +P PTQPPSSF
Sbjct: 1   MDQSEQGQQQQQQSQQPVMGVVAGAGQMAYSTAPYQTTAMMASGAPAIAVPSPTQPPSSF 60

Query: 61  SNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKA 120
           SNSPHQL YQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQT DFKNHSLPLARIKKIMKA
Sbjct: 61  SNSPHQLTYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTMDFKNHSLPLARIKKIMKA 120

Query: 121 DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 180
           DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL
Sbjct: 121 DEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 180

Query: 181 VDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGA 240
           VDIIPRDELKEEGLG+TK +IP+VGSPAD+PYYYVP QHPVG  GMIMGK +DQA  YG 
Sbjct: 181 VDIIPRDELKEEGLGVTKATIPMVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAAGYGG 240

Query: 241 TAQHPRPSMPFMPWPHTQPQQQQQ--TQQQSD 266
             Q PRP M FMPWP TQPQQQQQ   QQQSD
Sbjct: 241 -QQQPRPPMAFMPWPQTQPQQQQQQPQQQQSD 271

[Close]
BLAST of Cla004399 vs. NCBI nr
Match: gi|703072226|ref|XP_010089230.1| (Nuclear transcription factor Y subunit C-2 [Morus notabilis])

HSP 1 Score: 439.1 bits (1128), Expect = 5.5e-120
Identity = 220/264 (83.33%), Postives = 232/264 (87.88%), Query Frame = 1 

Query: 1   MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPP-TQPPSSFSNSP 60
           MDQSE++Q QQQ QQP  G+ AG  P S  YQTAPMVASG PA  +P  TQ P++FSNSP
Sbjct: 1   MDQSEQTQQQQQQQQPVVGMVAGYAPQS--YQTAPMVASGAPAAPVPSQTQAPATFSNSP 60

Query: 61  HQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDV 120
           HQLAYQQAQHFHHQQQQQQQQQLQMFW NQMQEIEQT DFKNHSLPLARIKKIMKADEDV
Sbjct: 61  HQLAYQQAQHFHHQQQQQQQQQLQMFWVNQMQEIEQTADFKNHSLPLARIKKIMKADEDV 120

Query: 121 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 180
           RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII
Sbjct: 121 RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 180

Query: 181 PRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQH 240
           PRDELKEEGLG+TK ++PVVGSPAD+PYYYVP QHPVG TGMIMGK +DQA MY   AQ 
Sbjct: 181 PRDELKEEGLGVTKATLPVVGSPADMPYYYVPPQHPVGPTGMIMGKPVDQAAMY--AAQQ 240

Query: 241 PRPSMPFMPWPHTQPQQQQQTQQQ 264
           PRP M F+PWP TQPQQQQQ Q Q
Sbjct: 241 PRPPMAFVPWPQTQPQQQQQQQPQ 260

[Close]
BLAST of Cla004399 vs. NCBI nr
Match: gi|590613292|ref|XP_007022622.1| (Nuclear transcription factor Y subunit C-2 isoform 1 [Theobroma cacao])

HSP 1 Score: 436.0 bits (1120), Expect = 4.6e-119
Identity = 224/278 (80.58%), Postives = 239/278 (85.97%), Query Frame = 1 

Query: 1   MDQSERSQ--------HQQQSQQPAGGV--SAGQLPYSN-PYQTAPMVASGTPAITIP-P 60
           MDQSE++Q        HQQ  QQP  GV   AGQ+ YS  PY TA MVASGTPA+ +P P
Sbjct: 1   MDQSEQTQQQHQHQQQHQQHQQQPVMGVVPGAGQMGYSTGPYHTASMVASGTPAVAVPSP 60

Query: 61  TQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR 120
           TQPP++FS+SPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR
Sbjct: 61  TQPPTTFSSSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLAR 120

Query: 121 IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 180
           IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR
Sbjct: 121 IKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR 180

Query: 181 TDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLD 240
           TDVFDFLVDIIPRDELKEEGLG+TK +IP+VGSPAD+PYYYVP QHPVG TGMIMGK +D
Sbjct: 181 TDVFDFLVDIIPRDELKEEGLGVTKATIPLVGSPADIPYYYVP-QHPVGPTGMIMGKPVD 240

Query: 241 QANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 267
           QA +Y    Q  RP M FMPWP  QPQQQQ  QQQSD+
Sbjct: 241 QATLY--PGQQARPPMAFMPWPQGQPQQQQSQQQQSDS 275

The following BLAST results are available for this feature:
BLAST of Cla004399 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYC2_ARATH5.9e-7469.91Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2... [more]
NFYC9_ARATH1.9e-6456.59Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2... [more]
NFYC3_ARATH1.8e-5956.71Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2... [more]
NFYC1_ARATH1.2e-5859.60Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1... [more]
NFYC4_ARATH5.6e-5658.88Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2... [more]
BLAST of Cla004399 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5U1_CUCSA3.3e-14898.11Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051420 PE=4 SV=1[more]
B9RHZ1_RICCO7.7e-12183.82Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_1574650... [more]
W9QHS7_9ROSA3.8e-12083.33Nuclear transcription factor Y subunit C-2 OS=Morus notabilis GN=L484_004059 PE=... [more]
A0A061FB94_THECC3.2e-11980.58Nuclear transcription factor Y subunit C-2 isoform 1 OS=Theobroma cacao GN=TCM_0... [more]
A0A067JQF0_JATCU9.4e-11980.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22608 PE=4 SV=1[more]
BLAST of Cla004399 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438149|ref|XP_004136852.1|4.7e-14898.11PREDICTED: nuclear transcription factor Y subunit C-2 [Cucumis sativus][more]
gi|1009129970|ref|XP_015882049.1|7.6e-12283.52PREDICTED: nuclear transcription factor Y subunit C-2 [Ziziphus jujuba][more]
gi|255544598|ref|XP_002513360.1|1.1e-12083.82PREDICTED: nuclear transcription factor Y subunit C-2 [Ricinus communis][more]
gi|703072226|ref|XP_010089230.1|5.5e-12083.33Nuclear transcription factor Y subunit C-2 [Morus notabilis][more]
gi|590613292|ref|XP_007022622.1|4.6e-11980.58Nuclear transcription factor Y subunit C-2 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0016602 CCAAT-binding factor complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11507watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU22579watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU22856watermelon EST collection version 2.0transcribed_cluster
WMU23824watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU26545watermelon EST collection version 2.0transcribed_cluster
WMU26743watermelon EST collection version 2.0transcribed_cluster
WMU26762watermelon EST collection version 2.0transcribed_cluster
WMU36275watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU39711watermelon EST collection version 2.0transcribed_cluster
WMU60537watermelon EST collection version 2.0transcribed_cluster
WMU69258watermelon EST collection version 2.0transcribed_cluster
WMU76785watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004399Cla004399.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU23824WMU23824transcribed_cluster
WMU22579WMU22579transcribed_cluster
WMU22856WMU22856transcribed_cluster
WMU26545WMU26545transcribed_cluster
WMU39711WMU39711transcribed_cluster
WMU26762WMU26762transcribed_cluster
WMU26743WMU26743transcribed_cluster
WMU69258WMU69258transcribed_cluster
WMU76785WMU76785transcribed_cluster
WMU11507WMU11507transcribed_cluster
WMU36275WMU36275transcribed_cluster
WMU60537WMU60537transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 103..166
score: 2.3
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 95..167
score: 1.9
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 59..175
score: 1.24
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 35..261
score: 4.9E
NoneNo IPR availablePANTHERPTHR10252:SF49SUBFAMILY NOT NAMEDcoord: 35..261
score: 4.9E