Cla003760 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003760
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Membrane protein (AHRD V1 ***- A8JG04_CHLRE); contains Interpro domain(s) IPR010903 Protein of unknown function DUF1517
Location	Chr6 : 14194833 .. 14195654 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCACAGATTTTTCTTGACTTGGATTTTTGTTTATGTTCAATTGAGAAAGTTCAGAGTTTCAGATGCATTGTTTTCAAGGCCCCCAAAGTAAGCACTAATAGCTTCAAAGGTTTTTCTACCTCATTAGATTTTTCTACCTCAGTTATCTAATGGAAGTTGAAAATTGTATGTTGGCTACACACTTTTGCACTCTAGCATCTTTTTCTACACCAATAATCTCATTCAAGTATTATATGAACTGTACCAATTCTTTTACTTGTAACTTTTAGTAGGTTTCTGAAGATCGTATGTTGGCTGGAAAGTTTTGCACCCTAGCACGAAGTTGTACTTCTCCATTAAAATTTAGACCATCTTGAATGTAAATAAAAAATTTGGTGTTATTTTACATTATATTGATTGGCTACCGAATTTTATTGTCACAACCTTAAAGGAGAGATGCATTCAATTTTGCTGGATTGATAATCTGATTAGATGAGAGAAAAAAGACCTTGATTTCCAATTTTCTCCCCTTTGATCACAATTTCTTGAATGTTAGATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATCAATGGCAGCAGGGACTTGAAGGAAGCTTTGCAGAAACTTGCATCCATCCCTTCCAGCAAAATATTGGTAAGTTGGTATTGTAGTATTTCACTTATGGTTTTTTCTCTGCGTGTCCCAAAATTGATTCCGTTTGCATGCAGGCTGTTGAAGTTTTGTGGACACCACAGAATGAGAACGACACATTGTCTGAACGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

mRNA sequence

ATGAAACCACAGATTTTTCTTGACTTGGATTTTTGTTTATGTTCAATTGAGAAAGTTCAGAGTTTCAGATGCATTGTTTTCAAGGCCCCCAAAATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATCAATGGCAGCAGGGACTTGAAGGAAGCTTTGCAGAAACTTGCATCCATCCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAGAATGAGAACGACACATTGTCTGAACGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

Coding sequence (CDS)

ATGAAACCACAGATTTTTCTTGACTTGGATTTTTGTTTATGTTCAATTGAGAAAGTTCAGAGTTTCAGATGCATTGTTTTCAAGGCCCCCAAAATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATCAATGGCAGCAGGGACTTGAAGGAAGCTTTGCAGAAACTTGCATCCATCCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAGAATGAGAACGACACATTGTCTGAACGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

Protein sequence

MKPQIFLDLDFCLCSIEKVQSFRCIVFKAPKITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL

Homology

[Close]

BLAST of Cla003760 vs. TrEMBL
Match: A0A0A0LY57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 157 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 216

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 217 DYPLLRPL 224

[Close]

BLAST of Cla003760 vs. TrEMBL
Match: A5BH64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035623 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 17  EKVQSFRCIVFKAPKITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWT 76
           E +QS   I ++  KITILVAAEGVHKLPTINGS DLKEALQKL SIPSS+ LAVEVLWT
Sbjct: 3   ELIQS---IYYEEIKITILVAAEGVHKLPTINGSGDLKEALQKLGSIPSSRTLAVEVLWT 62

Query: 77  PQNENDTLSERELLEDYPLLRPL 100
           PQNENDTLSERELLEDYPLLRPL
Sbjct: 63  PQNENDTLSERELLEDYPLLRPL 82

[Close]

BLAST of Cla003760 vs. TrEMBL
Match: V4V360_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001390mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLP+INGS DLKEALQKLASIPSSKI+AVEVLWTPQNENDTLSERELLE
Sbjct: 330 ITILVAAEGVHKLPSINGSEDLKEALQKLASIPSSKIMAVEVLWTPQNENDTLSERELLE 389

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 390 DYPLLRPL 397

[Close]

BLAST of Cla003760 vs. TrEMBL
Match: A0A061F284_THECC (Myelin-associated oligodendrocyte basic protein isoform 1 OS=Theobroma cacao GN=TCM_026403 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEG+HKLP INGSRDLKEALQKLASIP+SKILAVEVLWTPQNENDTLSERELLE
Sbjct: 331 ITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNENDTLSERELLE 390

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 391 DYPLLRPL 398

[Close]

BLAST of Cla003760 vs. TrEMBL
Match: A0A061F388_THECC (Myelin-associated oligodendrocyte basic protein isoform 2 OS=Theobroma cacao GN=TCM_026403 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEG+HKLP INGSRDLKEALQKLASIP+SKILAVEVLWTPQNENDTLSERELLE
Sbjct: 278 ITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNENDTLSERELLE 337

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 338 DYPLLRPL 345

[Close]

BLAST of Cla003760 vs. NCBI nr
Match: gi|449449537|ref|XP_004142521.1| (PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 339 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 398

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 399 DYPLLRPL 406

[Close]

BLAST of Cla003760 vs. NCBI nr
Match: gi|659125607|ref|XP_008462772.1| (PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 111 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 170

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 171 DYPLLRPL 178

[Close]

BLAST of Cla003760 vs. NCBI nr
Match: gi|700211709|gb|KGN66805.1| (hypothetical protein Csa_1G695400 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 157 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 216

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 217 DYPLLRPL 224

[Close]

BLAST of Cla003760 vs. NCBI nr
Match: gi|147815158|emb|CAN72331.1| (hypothetical protein VITISV_035623 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 17  EKVQSFRCIVFKAPKITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWT 76
           E +QS   I ++  KITILVAAEGVHKLPTINGS DLKEALQKL SIPSS+ LAVEVLWT
Sbjct: 3   ELIQS---IYYEEIKITILVAAEGVHKLPTINGSGDLKEALQKLGSIPSSRTLAVEVLWT 62

Query: 77  PQNENDTLSERELLEDYPLLRPL 100
           PQNENDTLSERELLEDYPLLRPL
Sbjct: 63  PQNENDTLSERELLEDYPLLRPL 82

[Close]

BLAST of Cla003760 vs. NCBI nr
Match: gi|567880971|ref|XP_006433044.1| (hypothetical protein CICLE_v10001390mg [Citrus clementina])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 32  ITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 91
           ITILVAAEGVHKLP+INGS DLKEALQKLASIPSSKI+AVEVLWTPQNENDTLSERELLE
Sbjct: 330 ITILVAAEGVHKLPSINGSEDLKEALQKLASIPSSKIMAVEVLWTPQNENDTLSERELLE 389

Query: 92  DYPLLRPL 100
           DYPLLRPL
Sbjct: 390 DYPLLRPL 397

The following BLAST results are available for this feature:

BLAST of Cla003760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY57_CUCSA	4.8e-28	98.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1	[more]
A5BH64_VITVI	1.1e-27	83.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035623 PE=4 SV=1	[more]
V4V360_9ROSI	1.4e-27	95.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001390mg PE=4 SV=1	[more]
A0A061F284_THECC	1.8e-27	95.59	Myelin-associated oligodendrocyte basic protein isoform 1 OS=Theobroma cacao GN=...	[more]
A0A061F388_THECC	1.8e-27	95.59	Myelin-associated oligodendrocyte basic protein isoform 2 OS=Theobroma cacao GN=...	[more]

BLAST of Cla003760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449537\|ref\|XP_004142521.1\|	6.9e-28	98.53	PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus]	[more]
gi\|659125607\|ref\|XP_008462772.1\|	6.9e-28	98.53	PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo]	[more]
gi\|700211709\|gb\|KGN66805.1\|	6.9e-28	98.53	hypothetical protein Csa_1G695400 [Cucumis sativus]	[more]
gi\|147815158\|emb\|CAN72331.1\|	1.5e-27	83.13	hypothetical protein VITISV_035623 [Vitis vinifera]	[more]
gi\|567880971\|ref\|XP_006433044.1\|	2.0e-27	95.59	hypothetical protein CICLE_v10001390mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010903	DUF1517

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU06374	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU46677	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003760	Cla003760.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU46677	WMU46677	transcribed_cluster
WMU06374	WMU06374	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010903	Protein of unknown function DUF1517	PFAM	PF07466	DUF1517	coord: 32..99 score: 6.6
None	No IPR available	PANTHER	PTHR33975	FAMILY NOT NAMED	coord: 32..99 score: 4.9
None	No IPR available	PANTHER	PTHR33975:SF2	SUBFAMILY NOT NAMED	coord: 32..99 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003760	Cla97C06G118900	Watermelon (97103) v2	wmwmbB412
Cla003760	Csa1G695400	Cucumber (Chinese Long) v2	cuwmB090
Cla003760	ClCG06G009090	Watermelon (Charleston Gray)	wcgwmB350
Cla003760	CSPI01G33790	Wild cucumber (PI 183967)	cpiwmB093
Cla003760	Cucsa.332290	Cucumber (Gy14) v1	cgywmB601
Cla003760	Lsi06G008090	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla003760	CsGy1G032360	Cucumber (Gy14) v2	cgybwmB089
Cla003760	MELO3C024679.2	Melon (DHL92) v3.6.1	medwmB286
Cla003760	CsaV3_1G045680	Cucumber (Chinese Long) v3	cucwmB101
Cla003760	Bhi02G001016	Wax gourd	wgowmB680

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003760	Bottle gourd (USVL1VR-Ls)	lsiwmB418
Cla003760	Watermelon (97103) v2	wmwmbB406
Cla003760	Melon (DHL92) v3.5.1	mewmB290
Cla003760	Watermelon (Charleston Gray)	wcgwmB344