WMU06374 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU06374
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Myelin-associated oligodendrocyte basic protein isoform 1
Location	Chr6 : 14194678 .. 14211283 (-)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAGGACAAGTGGATTTAGCAATGAGTACATTGTGATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATCAATGGCAGCAGGGACTTGAAGGAAGCTTTGCAGAAACTTGCATCCATCCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAGAATGAGAACGACACATTGTCTGAACGCGAACTCCTCGAAGATTACCCACTTTTAAGGCCTTTATAAGTACGTGCAAAAAAAGTAATTTTTACCATGCTTTACCGATTACATATAGATATAATGATTAGAATATAGAGCTGTCTTGACTTAGAAAATAGTGTATATAATAACATAATTACAAATTTAAGTTTTCATTTGGTTTTTCTATTCATTTATTTTGGTGGAC

Library


Library category	ESTs
watermelon fruit 10d library	2

Homology

[Close]

BLAST of WMU06374 vs. TAIR10
Match: AT1G54520.1 (AT1G54520.1 unknown protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-31
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           + SGFSNEYIV+TIL+AAEG+HKLP ING+ DLKEAL KL SIP +KI+AVEVLWTPQNE
Sbjct: 313 KASGFSNEYIVVTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNE 372

Query: 63  NDTLSERELLEDYPLLRPL 122
            D LSERELLEDYPLLRPL
Sbjct: 373 ADALSERELLEDYPLLRPL 391

Query: 123  182
           
Sbjct: 433  391

Query: 183  240
           
Sbjct: 493  391

[Close]

BLAST of WMU06374 vs. TrEMBL
Match: A0A0A0LY57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-34
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           RTSGFSNEYIVITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNE
Sbjct: 146 RTSGFSNEYIVITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNE 205

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 206 NDTLSERELLEDYPLLRPL 224

Query: 123  182
           
Sbjct: 266  224

Query: 183  240
           
Sbjct: 326  224

[Close]

BLAST of WMU06374 vs. TrEMBL
Match: V4V360_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001390mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.1e-33
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           R +GFSNEYIVITILVAAEGVHKLP+INGS DLKEALQKLASIPSSKI+AVEVLWTPQNE
Sbjct: 319 RANGFSNEYIVITILVAAEGVHKLPSINGSEDLKEALQKLASIPSSKIMAVEVLWTPQNE 378

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 379 NDTLSERELLEDYPLLRPL 397

Query: 123  182
           
Sbjct: 439  397

Query: 183  240
           
Sbjct: 499  397

[Close]

BLAST of WMU06374 vs. TrEMBL
Match: A0A061F284_THECC (Myelin-associated oligodendrocyte basic protein isoform 1 OS=Theobroma cacao GN=TCM_026403 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-33
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           + SGFSNEYIVITILVAAEG+HKLP INGSRDLKEALQKLASIP+SKILAVEVLWTPQNE
Sbjct: 320 KASGFSNEYIVITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNE 379

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 380 NDTLSERELLEDYPLLRPL 398

Query: 123  182
           
Sbjct: 440  398

Query: 183  240
           
Sbjct: 500  398

[Close]

BLAST of WMU06374 vs. TrEMBL
Match: A0A061F388_THECC (Myelin-associated oligodendrocyte basic protein isoform 2 OS=Theobroma cacao GN=TCM_026403 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-33
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           + SGFSNEYIVITILVAAEG+HKLP INGSRDLKEALQKLASIP+SKILAVEVLWTPQNE
Sbjct: 267 KASGFSNEYIVITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNE 326

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 327 NDTLSERELLEDYPLLRPL 345

Query: 123  182
           
Sbjct: 387  345

Query: 183  240
           
Sbjct: 447  345

[Close]

BLAST of WMU06374 vs. TrEMBL
Match: A0A059B7L1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04386 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           R+SGFSNEYIVITILVAAEGVHKLP+ING  DLKEALQKL SIPSSKILAVEVLWTPQNE
Sbjct: 322 RSSGFSNEYIVITILVAAEGVHKLPSINGGGDLKEALQKLGSIPSSKILAVEVLWTPQNE 381

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 382 NDTLSERELLEDYPLLRPL 400

Query: 123  182
           
Sbjct: 442  400

Query: 183  240
           
Sbjct: 502  400

[Close]

BLAST of WMU06374 vs. NCBI nr
Match: gi|700211709|gb|KGN66805.1| (hypothetical protein Csa_1G695400 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           RTSGFSNEYIVITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNE
Sbjct: 146 RTSGFSNEYIVITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNE 205

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 206 NDTLSERELLEDYPLLRPL 224

Query: 123  182
           
Sbjct: 266  224

Query: 183  240
           
Sbjct: 326  224

[Close]

BLAST of WMU06374 vs. NCBI nr
Match: gi|659125607|ref|XP_008462772.1| (PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           RTSGFSNEYIVITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNE
Sbjct: 100 RTSGFSNEYIVITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNE 159

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 160 NDTLSERELLEDYPLLRPL 178

Query: 123  182
           
Sbjct: 220  178

Query: 183  240
           
Sbjct: 280  178

[Close]

BLAST of WMU06374 vs. NCBI nr
Match: gi|449449537|ref|XP_004142521.1| (PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           RTSGFSNEYIVITILVAAEGVHKLPTINGS DLKEALQKLASIPSSKILAVEVLWTPQNE
Sbjct: 328 RTSGFSNEYIVITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNE 387

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 388 NDTLSERELLEDYPLLRPL 406

Query: 123  182
           
Sbjct: 448  406

Query: 183  240
           
Sbjct: 508  406

[Close]

BLAST of WMU06374 vs. NCBI nr
Match: gi|567880971|ref|XP_006433044.1| (hypothetical protein CICLE_v10001390mg [Citrus clementina])

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-33
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           R +GFSNEYIVITILVAAEGVHKLP+INGS DLKEALQKLASIPSSKI+AVEVLWTPQNE
Sbjct: 319 RANGFSNEYIVITILVAAEGVHKLPSINGSEDLKEALQKLASIPSSKIMAVEVLWTPQNE 378

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 379 NDTLSERELLEDYPLLRPL 397

Query: 123  182
           
Sbjct: 439  397

Query: 183  240
           
Sbjct: 499  397

[Close]

BLAST of WMU06374 vs. NCBI nr
Match: gi|590642849|ref|XP_007030634.1| (Myelin-associated oligodendrocyte basic protein isoform 1 [Theobroma cacao])

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-33
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 3


Query: 3   RTSGFSNEYIVITILVAAEGVHKLPTINGSRDLKEALQKLASIPSSKILAVEVLWTPQNE 62
           + SGFSNEYIVITILVAAEG+HKLP INGSRDLKEALQKLASIP+SKILAVEVLWTPQNE
Sbjct: 320 KASGFSNEYIVITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNE 379

Query: 63  NDTLSERELLEDYPLLRPL 122
           NDTLSERELLEDYPLLRPL
Sbjct: 380 NDTLSERELLEDYPLLRPL 398

Query: 123  182
           
Sbjct: 440  398

Query: 183  240
           
Sbjct: 500  398

The following BLAST results are available for this feature:

BLAST of WMU06374 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54520.1	2.5e-31	81.01	unknown protein	[more]

BLAST of WMU06374 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY57_CUCSA	2.1e-34	98.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1	[more]
V4V360_9ROSI	5.1e-33	93.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001390mg PE=4 SV=1	[more]
A0A061F284_THECC	6.7e-33	93.67	Myelin-associated oligodendrocyte basic protein isoform 1 OS=Theobroma cacao GN=...	[more]
A0A061F388_THECC	6.7e-33	93.67	Myelin-associated oligodendrocyte basic protein isoform 2 OS=Theobroma cacao GN=...	[more]
A0A059B7L1_EUCGR	1.5e-32	93.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04386 PE=4 SV=1	[more]

BLAST of WMU06374 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211709\|gb\|KGN66805.1\|	1.3e-34	98.73	hypothetical protein Csa_1G695400 [Cucumis sativus]	[more]
gi\|659125607\|ref\|XP_008462772.1\|	1.3e-34	98.73	PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo]	[more]
gi\|449449537\|ref\|XP_004142521.1\|	1.3e-34	98.73	PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus]	[more]
gi\|567880971\|ref\|XP_006433044.1\|	3.3e-33	93.67	hypothetical protein CICLE_v10001390mg [Citrus clementina]	[more]
gi\|590642849\|ref\|XP_007030634.1\|	4.3e-33	93.67	Myelin-associated oligodendrocyte basic protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR010903	DUF1517

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003762	Cla003762	gene
Cla003760	Cla003760	gene
Cla003761	Cla003761	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0009258	S1_0009258	EST
S1_0027046	S1_0027046	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010903	Protein of unknown function DUF1517	PFAM	PF07466	DUF1517	coord: 5..80 score: 2.0
None	No IPR available	PANTHER	PTHR33975	FAMILY NOT NAMED	coord: 5..80 score: 9.4
None	No IPR available	PANTHER	PTHR33975:SF2	SUBFAMILY NOT NAMED	coord: 5..80 score: 9.4