Cucsa.332290 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.332290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Myelin-associated oligodendrocyte basic protein isoform 2
Location	scaffold03264 : 48721 .. 49001 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATAAATGGCAGCGGGGACTTGAAGGAAGCTTTGCAAAAACTTGCATCTATTCCTTCCAGCAAAATATTGGTAAGTTGGTATTGTATTTCACTTCTGGTTTGTTTTATTCTTCATGTCTCAAAATCAATTCTGTTTGCATGCAGGCTGTTGAAGTTTTGTGGACACCACAAAATGAAAATGACACATTGTCCGAGCGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

mRNA sequence

ATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATAAATGGCAGCGGGGACTTGAAGGAAGCTTTGCAAAAACTTGCATCTATTCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAAAATGAAAATGACACATTGTCCGAGCGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

Coding sequence (CDS)

ATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATAAATGGCAGCGGGGACTTGAAGGAAGCTTTGCAAAAACTTGCATCTATTCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAAAATGAAAATGACACATTGTCCGAGCGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAA

Protein sequence

ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL*

Homology

[Close]

BLAST of Cucsa.332290 vs. TrEMBL
Match: A0A0A0LY57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 157 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 216

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 217 DYPLLRPL 224

[Close]

BLAST of Cucsa.332290 vs. TrEMBL
Match: B9RES7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1428510 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.7e-28
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           IT+LVAAEGVHKLPTINGSGDLKEALQKL SIPSSK+LAVEVLWTPQNENDTL+ERELLE
Sbjct: 293 ITLLVAAEGVHKLPTINGSGDLKEALQKLGSIPSSKVLAVEVLWTPQNENDTLTERELLE 352

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 353 DYPLLRPL 360

[Close]

BLAST of Cucsa.332290 vs. TrEMBL
Match: A0A067DBR4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041706mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-28
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 1  ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
          ITILVAAEGVHKLP+INGSGDL EALQKLASIPSSKI+AVEVLWTPQNENDTLSERELLE
Sbjct: 1  ITILVAAEGVHKLPSINGSGDLNEALQKLASIPSSKIMAVEVLWTPQNENDTLSERELLE 60

Query: 61 DYPLLRPL 69
          DYPLLRPL
Sbjct: 61 DYPLLRPL 68

[Close]

BLAST of Cucsa.332290 vs. TrEMBL
Match: A5BH64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035623 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
          ITILVAAEGVHKLPTINGSGDLKEALQKL SIPSS+ LAVEVLWTPQNENDTLSERELLE
Sbjct: 15 ITILVAAEGVHKLPTINGSGDLKEALQKLGSIPSSRTLAVEVLWTPQNENDTLSERELLE 74

Query: 61 DYPLLRPL 69
          DYPLLRPL
Sbjct: 75 DYPLLRPL 82

[Close]

BLAST of Cucsa.332290 vs. TrEMBL
Match: F6HTU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01650 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           ITILVAAEGVHKLPTINGSGDLKEALQKL SIPSS+ LAVEVLWTPQNENDTLSERELLE
Sbjct: 275 ITILVAAEGVHKLPTINGSGDLKEALQKLGSIPSSRTLAVEVLWTPQNENDTLSERELLE 334

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 335 DYPLLRPL 342

[Close]

BLAST of Cucsa.332290 vs. TAIR10
Match: AT1G54520.1 (AT1G54520.1 unknown protein)

HSP 1 Score: 113.2 bits (282), Expect = 6.3e-26
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           +TIL+AAEG+HKLP ING+ DLKEAL KL SIP +KI+AVEVLWTPQNE D LSERELLE
Sbjct: 324 VTILMAAEGIHKLPPINGTTDLKEALLKLGSIPRNKIMAVEVLWTPQNEADALSERELLE 383

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 384 DYPLLRPL 391

[Close]

BLAST of Cucsa.332290 vs. NCBI nr
Match: gi|700211709|gb|KGN66805.1| (hypothetical protein Csa_1G695400 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 157 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 216

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 217 DYPLLRPL 224

[Close]

BLAST of Cucsa.332290 vs. NCBI nr
Match: gi|659125607|ref|XP_008462772.1| (PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 111 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 170

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 171 DYPLLRPL 178

[Close]

BLAST of Cucsa.332290 vs. NCBI nr
Match: gi|449449537|ref|XP_004142521.1| (PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE
Sbjct: 339 ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 398

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 399 DYPLLRPL 406

[Close]

BLAST of Cucsa.332290 vs. NCBI nr
Match: gi|223548207|gb|EEF49698.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 131.0 bits (328), Expect = 8.2e-28
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           IT+LVAAEGVHKLPTINGSGDLKEALQKL SIPSSK+LAVEVLWTPQNENDTL+ERELLE
Sbjct: 293 ITLLVAAEGVHKLPTINGSGDLKEALQKLGSIPSSKVLAVEVLWTPQNENDTLTERELLE 352

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 353 DYPLLRPL 360

[Close]

BLAST of Cucsa.332290 vs. NCBI nr
Match: gi|1000981267|ref|XP_015570667.1| (PREDICTED: uncharacterized protein LOC8288423 isoform X1 [Ricinus communis])

HSP 1 Score: 131.0 bits (328), Expect = 8.2e-28
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 1   ITILVAAEGVHKLPTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLE 60
           IT+LVAAEGVHKLPTINGSGDLKEALQKL SIPSSK+LAVEVLWTPQNENDTL+ERELLE
Sbjct: 340 ITLLVAAEGVHKLPTINGSGDLKEALQKLGSIPSSKVLAVEVLWTPQNENDTLTERELLE 399

Query: 61  DYPLLRPL 69
           DYPLLRPL
Sbjct: 400 DYPLLRPL 407

The following BLAST results are available for this feature:

BLAST of Cucsa.332290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY57_CUCSA	4.0e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695400 PE=4 SV=1	[more]
B9RES7_RICCO	5.7e-28	94.12	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1428510 PE=4 SV=1	[more]
A0A067DBR4_CITSI	7.5e-28	95.59	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041706mg PE=4 S...	[more]
A5BH64_VITVI	9.8e-28	95.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035623 PE=4 SV=1	[more]
F6HTU2_VITVI	9.8e-28	95.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01650 PE=4 SV=...	[more]

BLAST of Cucsa.332290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54520.1	6.3e-26	80.88	unknown protein	[more]

BLAST of Cucsa.332290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211709\|gb\|KGN66805.1\|	5.7e-29	100.00	hypothetical protein Csa_1G695400 [Cucumis sativus]	[more]
gi\|659125607\|ref\|XP_008462772.1\|	5.7e-29	100.00	PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo]	[more]
gi\|449449537\|ref\|XP_004142521.1\|	5.7e-29	100.00	PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus]	[more]
gi\|223548207\|gb\|EEF49698.1\|	8.2e-28	94.12	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000981267\|ref\|XP_015570667.1\|	8.2e-28	94.12	PREDICTED: uncharacterized protein LOC8288423 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010903	DUF1517

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.332290.1	Cucsa.332290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010903	Protein of unknown function DUF1517	PFAM	PF07466	DUF1517	coord: 1..68 score: 3.3
None	No IPR available	PANTHER	PTHR33975	FAMILY NOT NAMED	coord: 1..68 score: 3.7
None	No IPR available	PANTHER	PTHR33975:SF2	SUBFAMILY NOT NAMED	coord: 1..68 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.332290	Cla003760	Watermelon (97103) v1	cgywmB601
Cucsa.332290	Csa1G695400	Cucumber (Chinese Long) v2	cgycuB470
Cucsa.332290	ClCG06G009090	Watermelon (Charleston Gray)	cgywcgB572
Cucsa.332290	CSPI01G33790	Wild cucumber (PI 183967)	cgycpiB496
Cucsa.332290	Lsi06G008090	Bottle gourd (USVL1VR-Ls)	cgylsiB540
Cucsa.332290	MELO3C024679.2	Melon (DHL92) v3.6.1	cgymedB545
Cucsa.332290	CsaV3_1G045680	Cucumber (Chinese Long) v3	cgycucB513
Cucsa.332290	Cla97C06G118900	Watermelon (97103) v2	cgywmbB576

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.332290	Wax gourd	cgywgoB669
Cucsa.332290	Melon (DHL92) v3.5.1	cgymeB544