WMU46677 (transcribed_cluster) Watermelon (97103) v1

NameWMU46677
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMembrane protein
LocationChr6 : 14194670 .. 14195684 (-)
Sequence length508
The following sequences are available for this feature:

transcribed_cluster sequence

TTGCATCTTTAATCTCAATAGTAGAAGGCATGAAACCACAGATTTTTCTTGACTTGGATTTTTGTTTATGTTCAATTGAGAAAGTTCAGAGTTTCAGATGCATTGTTTTCAAGGCCCCCAAAATAACAATATTGGTGGCTGCTGAGGGAGTTCATAAGCTGCCCACTATCAATGGCAGCAGGGACTTGAAGGAAGCTTTTGCAGAAACTTGCATCCATCCCTTCCAGCAAAATATTGGCTGTTGAAGTTTTGTGGACACCACAGAATGAGAACGACACATTGTCTGAACGCGAACTCCTTGAAGATTACCCACTTTTAAGGCCTTTATAAGTACGTGCAAAAAAAGTATTTTACCATGCTCTACCGATTACATATAGATATAATGATTAGAATATAGAGCTGTCTTGACTTAGAAAATGTGTATATAATAACATAATTACAAATTTAGTTTTCATTTGGTTTTTCTATTCTATTTAATTTTGGTTTGGGAGTGAACCTTACGTCCTCC
BLAST of WMU46677 vs. TAIR10
Match: AT1G54520.1 (AT1G54520.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-14
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 1

Query: 190 RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 249
           ++ L KL SIP +KI+AVEVLWTPQNE D LSERELLEDYPLLRPL
Sbjct: 346 KEALLKLGSIPRNKIMAVEVLWTPQNEADALSERELLEDYPLLRPL 391

Query: 250 309
           
Sbjct: 406 391

Query: 310 328
           
Sbjct: 466 391


HSP 2 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 3

Query: 123 ITILVAAEGVHKLPTINGSRDLKEA 182
           +TIL+AAEG+HKLP ING+ DLKEA
Sbjct: 324 VTILMAAEGIHKLPPINGTTDLKEA 348

Query: 183 198
           
Sbjct: 384 348

BLAST of WMU46677 vs. NCBI nr
Match: gi|449449537|ref|XP_004142521.1| (PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query: 163 PLSMAAGT*RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 222
           P    +G  ++ LQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL
Sbjct: 352 PTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 406

Query: 223 282
           
Sbjct: 412 406

Query: 283 328
           
Sbjct: 472 406

BLAST of WMU46677 vs. NCBI nr
Match: gi|659125607|ref|XP_008462772.1| (PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query: 163 PLSMAAGT*RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 222
           P    +G  ++ LQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL
Sbjct: 124 PTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 178

Query: 223 282
           
Sbjct: 184 178

Query: 283 328
           
Sbjct: 244 178

BLAST of WMU46677 vs. NCBI nr
Match: gi|700211709|gb|KGN66805.1| (hypothetical protein Csa_1G695400 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1

Query: 163 PLSMAAGT*RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 222
           P    +G  ++ LQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL
Sbjct: 170 PTINGSGDLKEALQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 224

Query: 223 282
           
Sbjct: 230 224

Query: 283 328
           
Sbjct: 290 224

BLAST of WMU46677 vs. NCBI nr
Match: gi|951044676|ref|XP_014518711.1| (PREDICTED: uncharacterized protein LOC106775962 [Vigna radiata var. radiata])

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 163 PLSMAAGT*RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 222
           P    +G  +  LQKLASIPSSK+LAVEVLWTPQNENDTLSERELLEDYPLLRPL
Sbjct: 325 PTINGSGNLKDALQKLASIPSSKLLAVEVLWTPQNENDTLSERELLEDYPLLRPL 379

Query: 223 282
           
Sbjct: 385 379

Query: 283 328
           
Sbjct: 445 379

BLAST of WMU46677 vs. NCBI nr
Match: gi|920711695|gb|KOM52944.1| (hypothetical protein LR48_Vigan09g160300 [Vigna angularis])

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 163 PLSMAAGT*RKLLQKLASIPSSKILAVEVLWTPQNENDTLSERELLEDYPLLRPL 222
           P    +G  +  LQKLASIPSSK+LAVEVLWTPQNENDTLSERELLEDYPLLRPL
Sbjct: 325 PTINGSGNLKDALQKLASIPSSKLLAVEVLWTPQNENDTLSERELLEDYPLLRPL 379

Query: 223 282
           
Sbjct: 385 379

Query: 283 328
           
Sbjct: 445 379

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G54520.14.6e-1478.26 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449449537|ref|XP_004142521.1|3.0e-1581.82PREDICTED: uncharacterized protein LOC101210275 [Cucumis sativus][more]
gi|659125607|ref|XP_008462772.1|3.0e-1581.82PREDICTED: uncharacterized protein LOC103501059, partial [Cucumis melo][more]
gi|700211709|gb|KGN66805.1|3.0e-1581.82hypothetical protein Csa_1G695400 [Cucumis sativus][more]
gi|951044676|ref|XP_014518711.1|6.7e-1580.00PREDICTED: uncharacterized protein LOC106775962 [Vigna radiata var. radiata][more]
gi|920711695|gb|KOM52944.1|6.7e-1580.00hypothetical protein LR48_Vigan09g160300 [Vigna angularis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla003760Cla003760gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0091679S1_0091679EST
S2_0113516S2_0113516EST