Cla003635 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003635
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Auxin responsive protein (AHRD V1 -- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein
Location	Chr1 : 5592851 .. 5593542 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGTAAGTCGATAATATCGAGTCAATCCATTTCAGTTTCAATCGCAATCGCTTTTCCTGGGGTTTATGTGTGTGTGTTTCCGTTGTGGTGGTGGATCAATTATTGCAGGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGGTTAGTATAATCTTCATATCCTAAATATACTATATTTCAATTATCTATATCCAAACACTTTCCTCTTTTGTTGGTTTTTAAAAATCATATTTGAAATCTTGTAATTTTTTAGCTTGA

mRNA sequence

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGCTTGA

Coding sequence (CDS)

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGCTTGA

Protein sequence

MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTNPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKLA

Homology

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22E_VIGRR (Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-22
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQS----QISAKQSNSESRSGRTDSSISTSTTNPS 72
           +LN  ATELRLGL  P S   QE+   S    + S K+S+ E    R  S+I++ +++ +
Sbjct: 7   ELNLRATELRLGL--PGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDST 66

Query: 73  SDAEH---CYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           + ++H     +  K QVVGWPP+RS+RKN +       ++KK E+ +    GMY+KVS+ 
Sbjct: 67  TTSDHNEDSVQPAKVQVVGWPPIRSFRKNSL-------QQKKVEQGD--GTGMYLKVSMA 126

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMF 153
           GAPYLRKIDLK+Y+SY +LL AL+++F
Sbjct: 127 GAPYLRKIDLKVYKSYPELLKALQNLF 142

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-22
Identity = 68/155 (43.87%), Postives = 94/155 (60.65%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQEQ---HSQSQISAKQSNSESRSGRTD 60
           M+    S++   +LN +ATELRLGL  P S   +++    S  + S + S+ ES S  +D
Sbjct: 1   MENSLGSYEK--ELNLKATELRLGL--PGSDEPEKRATARSNKRSSPEASDEESISNGSD 60

Query: 61  SSISTSTTNPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYG 120
            +   +   P+          KAQVVGWPP+RSYRKN +    ++KK++++E       G
Sbjct: 61  VTKEDNVVPPA----------KAQVVGWPPIRSYRKNNV----QQKKEEESEGN-----G 120

Query: 121 MYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMF 153
           MYVKVS+ GAPYLRKIDLK+Y+SY +LL ALE+MF
Sbjct: 121 MYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMF 132

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 63/144 (43.75%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 14  LNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSI-STSTTNPSSDAE 73
           +N +ATELRLGL      TE+       +S  +SN       T+  I ST  T  +S   
Sbjct: 11  VNLKATELRLGL----PGTEET------VSCGKSNKRVLPEATEKEIESTGKTETASPP- 70

Query: 74  HCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRK 133
                 KAQ+VGWPPVRSYRKN +          +T+K E    G YVKVS+DGAPYLRK
Sbjct: 71  ------KAQIVGWPPVRSYRKNNV----------QTKKSESEGQGNYVKVSMDGAPYLRK 127

Query: 134 IDLKLYQSYQQLLDALEDMFNFKL 157
           IDL +Y+ Y +L+ +LE+MF F +
Sbjct: 131 IDLTMYKQYPELMKSLENMFKFSV 127

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22B_VIGRR (Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.5e-20
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTNPSSDAE 72
           DLN +ATELRLGL      TE+++ +  +  A   N++ R  R  S  S S +  S   +
Sbjct: 10  DLNLKATELRLGL----PGTEEKEDNNLRTHAVLRNNK-RQVRETSQDSVSISKASHHQQ 69

Query: 73  HCYELT----KAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAP 132
           H   ++    KA++VGWPP+RSYRKN +              +E    G++VKVS+DGAP
Sbjct: 70  HVETVSAPPPKAKIVGWPPIRSYRKNSV--------------QEGEGDGIFVKVSMDGAP 129

Query: 133 YLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           YLRK+DLK+Y  Y +LL ALE MF   +
Sbjct: 130 YLRKVDLKVYGGYPELLKALETMFKLAI 138

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.4e-20
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 14  LNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSES-RSGRTDSSISTSTTNPSSDAE 73
           +N + TELRLGL      T+    ++ ++S   +N++   S  T+  I +S+    +   
Sbjct: 5   VNLKETELRLGL----PGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPP 64

Query: 74  HCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRK 133
                 KAQ+VGWPPVRSYRKN I     + KK ++E +     G+YVKVS+DGAPYLRK
Sbjct: 65  R-----KAQIVGWPPVRSYRKNNI-----QSKKNESEHE---GQGIYVKVSMDGAPYLRK 124

Query: 134 IDLKLYQSYQQLLDALEDMFNFKL 157
           IDL  Y+ Y +LL ALE MF F +
Sbjct: 125 IDLSCYKGYSELLKALEVMFKFSV 131

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: E5GCU3_CUCME (Auxin-responsive protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ---EQHSQSQISAKQSNSESRSG-RT 60
           MKR  SSFQ+LHDLNFEATELRLGL      TEQ   E +S SQ+SAKQS SESRSG RT
Sbjct: 49  MKRQLSSFQNLHDLNFEATELRLGLPQTSCRTEQQPAEGNSHSQMSAKQSKSESRSGGRT 108

Query: 61  DS-SISTSTTNPSSD-AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIV 120
           DS SISTST + S D A+HC+E TK QVVGWPPVRSYRKNVII   +KKKKKK +KKEIV
Sbjct: 109 DSNSISTSTNSSSDDHADHCHEHTKTQVVGWPPVRSYRKNVIIETEKKKKKKKKKKKEIV 168

Query: 121 NY------GMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           N       GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALE+MFNFK+
Sbjct: 169 NMELGLMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEEMFNFKI 216

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: A0A0A0KKT1_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G166440 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.1e-50
Identity = 114/163 (69.94%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 2   KRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ----EQHSQSQISAKQSNSESRSG-RT 61
           ++  SSFQ+LH LNFEATELRLGL      TEQ    E+ S SQISAKQS SE+RSG RT
Sbjct: 3   RQRLSSFQNLHHLNFEATELRLGLPQTSCRTEQQPAEERSSHSQISAKQSKSETRSGGRT 62

Query: 62  DSSISTSTTNPSSD--AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEI- 121
           DS+   ++TNPSSD  A+HC+E TK QVVGWPPVRSYRKNVII   EKKKKK+    E+ 
Sbjct: 63  DSNSILTSTNPSSDNHADHCHEHTKTQVVGWPPVRSYRKNVIIETEEKKKKKEIVNMELG 122

Query: 122 VNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           +  GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALEDMFNFK+
Sbjct: 123 LMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEDMFNFKI 165

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: B9S4S2_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0991820 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-25
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISA-KQSNSE-SRSGRTDSSISTSTTNPSSD 72
           DLN +ATELRLGL P     +Q+Q + S     K+++ E S   RT S+I TS +   +D
Sbjct: 6   DLNLKATELRLGL-PGSDEPDQKQPTSSVTRGIKRASPELSEESRTRSNI-TSGSIVEND 65

Query: 73  AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYL 132
            EHC    KAQVVGWPP+RSYRKN            +T++ E    GMYVKVS+DGAPYL
Sbjct: 66  EEHCASPAKAQVVGWPPIRSYRKNYF----------QTKQSEGEGAGMYVKVSVDGAPYL 125

Query: 133 RKIDLKLYQSYQQLLDALEDMFNFKL 157
           RKID+K+Y SY +LL ALE+MF  K+
Sbjct: 126 RKIDIKVYNSYPELLKALENMFKLKI 139

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: A9PCG9_POPTR (Auxin-responsive protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-24
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 6   DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 65

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 66  DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 125

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MFN KL
Sbjct: 126 GAPYLRKIDLKVYKGYPELLEVVEEMFNSKL 143

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: B9SZ70_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0484480 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 72/151 (47.68%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 7   SFQSLHDLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTN 66
           +F+   DLN EATELRL L P  ++  +E H  ++ + K+S  +    R++S  +++ +N
Sbjct: 2   AFERDGDLNLEATELRLAL-PGTTAATEESHVTAKCN-KRSFPDMNDDRSESRNNSNVSN 61

Query: 67  PSS-DAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 126
               D E     TKAQVVGWPPVRSYRKN         + +KTE +   N G+YVKVS+D
Sbjct: 62  DKKGDQETTSPPTKAQVVGWPPVRSYRKNCF-------QARKTEAEAAGN-GIYVKVSMD 121

Query: 127 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +L  ALEDMF FK+
Sbjct: 122 GAPYLRKIDLKVYKCYTELFQALEDMFKFKV 142

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|659073289|ref|XP_008436982.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ---EQHSQSQISAKQSNSESRSG-RT 60
           MKR  SSFQ+LHDLNFEATELRLGL      TEQ   E +S SQ+SAKQS SESRSG RT
Sbjct: 49  MKRQLSSFQNLHDLNFEATELRLGLPQTSCRTEQQPAEGNSHSQMSAKQSKSESRSGGRT 108

Query: 61  DS-SISTSTTNPSSD-AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIV 120
           DS SISTST + S D A+HC+E TK QVVGWPPVRSYRKNVII   +KKKKKK +KKEIV
Sbjct: 109 DSNSISTSTNSSSDDHADHCHEHTKTQVVGWPPVRSYRKNVIIETEKKKKKKKKKKKEIV 168

Query: 121 NY------GMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           N       GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALE+MFNFK+
Sbjct: 169 NMELGLMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEEMFNFKI 216

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|700195123|gb|KGN50300.1| (hypothetical protein Csa_5G166440 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 114/163 (69.94%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 2   KRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ----EQHSQSQISAKQSNSESRSG-RT 61
           ++  SSFQ+LH LNFEATELRLGL      TEQ    E+ S SQISAKQS SE+RSG RT
Sbjct: 3   RQRLSSFQNLHHLNFEATELRLGLPQTSCRTEQQPAEERSSHSQISAKQSKSETRSGGRT 62

Query: 62  DSSISTSTTNPSSD--AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEI- 121
           DS+   ++TNPSSD  A+HC+E TK QVVGWPPVRSYRKNVII   EKKKKK+    E+ 
Sbjct: 63  DSNSILTSTNPSSDNHADHCHEHTKTQVVGWPPVRSYRKNVIIETEEKKKKKEIVNMELG 122

Query: 122 VNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           +  GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALEDMFNFK+
Sbjct: 123 LMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEDMFNFKI 165

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|255559921|ref|XP_002520979.1| (PREDICTED: auxin-induced protein 22E [Ricinus communis])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISA-KQSNSE-SRSGRTDSSISTSTTNPSSD 72
           DLN +ATELRLGL P     +Q+Q + S     K+++ E S   RT S+I TS +   +D
Sbjct: 6   DLNLKATELRLGL-PGSDEPDQKQPTSSVTRGIKRASPELSEESRTRSNI-TSGSIVEND 65

Query: 73  AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYL 132
            EHC    KAQVVGWPP+RSYRKN            +T++ E    GMYVKVS+DGAPYL
Sbjct: 66  EEHCASPAKAQVVGWPPIRSYRKNYF----------QTKQSEGEGAGMYVKVSVDGAPYL 125

Query: 133 RKIDLKLYQSYQQLLDALEDMFNFKL 157
           RKID+K+Y SY +LL ALE+MF  K+
Sbjct: 126 RKIDIKVYNSYPELLKALENMFKLKI 139

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|118484390|gb|ABK94072.1| (unknown [Populus trichocarpa])

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 6   DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 65

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 66  DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 125

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MFN KL
Sbjct: 126 GAPYLRKIDLKVYKGYPELLEVVEEMFNSKL 143

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|506954080|gb|AGM20676.1| (IAA4 [Populus tomentosa])

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 83  DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 142

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 143 DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 202

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MF FK+
Sbjct: 203 GAPYLRKIDLKVYKGYPELLEVVEEMFKFKV 220

The following BLAST results are available for this feature:

BLAST of Cla003635 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AX22E_VIGRR	2.4e-22	43.54	Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1	[more]
AX22D_VIGRR	3.1e-22	43.87	Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1	[more]
IAA4_ARATH	4.9e-20	43.75	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2	[more]
AX22B_VIGRR	6.5e-20	41.22	Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1	[more]
IAA3_ARATH	8.4e-20	42.36	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1	[more]

BLAST of Cla003635 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCU3_CUCME	1.1e-53	73.81	Auxin-responsive protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KKT1_CUCSA	7.1e-50	69.94	Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G166440 PE=3 SV=1	[more]
B9S4S2_RICCO	3.6e-25	50.68	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0991820 PE=3 SV=1	[more]
A9PCG9_POPTR	1.8e-24	47.02	Auxin-responsive protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9SZ70_RICCO	2.3e-24	47.68	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0484480 PE=3 SV=1	[more]

BLAST of Cla003635 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073289\|ref\|XP_008436982.1\|	1.5e-53	73.81	PREDICTED: auxin-induced protein 22D-like [Cucumis melo]	[more]
gi\|700195123\|gb\|KGN50300.1\|	1.0e-49	69.94	hypothetical protein Csa_5G166440 [Cucumis sativus]	[more]
gi\|255559921\|ref\|XP_002520979.1\|	5.1e-25	50.68	PREDICTED: auxin-induced protein 22E [Ricinus communis]	[more]
gi\|118484390\|gb\|ABK94072.1\|	2.5e-24	47.02	unknown [Populus trichocarpa]	[more]
gi\|506954080\|gb\|AGM20676.1\|	3.3e-24	46.36	IAA4 [Populus tomentosa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003635	Cla003635.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 117..157 score: 14
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 13..152 score: 2.7
None	No IPR available	PANTHER	PTHR31734:SF11	AUXIN-RESPONSIVE PROTEIN IAA1-RELATED	coord: 13..152 score: 2.7
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 110..154 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003635	Cla97C01G004700	Watermelon (97103) v2	wmwmbB245
Cla003635	Csa5G166440	Cucumber (Chinese Long) v2	cuwmB415
Cla003635	MELO3C005476	Melon (DHL92) v3.5.1	mewmB033
Cla003635	ClCG01G004490	Watermelon (Charleston Gray)	wcgwmB154
Cla003635	CSPI05G07260	Wild cucumber (PI 183967)	cpiwmB424
Cla003635	Cucsa.129530	Cucumber (Gy14) v1	cgywmB216
Cla003635	CmaCh15G010910	Cucurbita maxima (Rimu)	cmawmB275
Cla003635	CmoCh15G011500	Cucurbita moschata (Rifu)	cmowmB265
Cla003635	CsGy5G004690	Cucumber (Gy14) v2	cgybwmB388
Cla003635	MELO3C005476.2	Melon (DHL92) v3.6.1	medwmB032
Cla003635	Carg23179	Silver-seed gourd	carwmB0539
Cla003635	CsaV3_5G004700	Cucumber (Chinese Long) v3	cucwmB440
Cla003635	Bhi12G000447	Wax gourd	wgowmB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003635	Melon (DHL92) v3.5.1	mewmB024
Cla003635	Cucurbita pepo (Zucchini)	cpewmB190
Cla003635	Cucurbita pepo (Zucchini)	cpewmB714
Cla003635	Bottle gourd (USVL1VR-Ls)	lsiwmB031
Cla003635	Melon (DHL92) v3.6.1	medwmB022
Cla003635	Wax gourd	wgowmB227