Cla003635.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003635
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Auxin responsive protein (AHRD V1 -- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein
Location	Chr1 : 5592851 .. 5593542 (+)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGTAAGTCGATAATATCGAGTCAATCCATTTCAGTTTCAATCGCAATCGCTTTTCCTGGGGTTTATGTGTGTGTGTTTCCGTTGTGGTGGTGGATCAATTATTGCAGGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGGTTAGTATAATCTTCATATCCTAAATATACTATATTTCAATTATCTATATCCAAACACTTTCCTCTTTTGTTGGTTTTTAAAAATCATATTTGAAATCTTGTAATTTTTTAGCTTGA

mRNA sequence

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGCTTGA

Coding sequence (CDS)

ATGAAACGCCATTTCTCGAGTTTCCAAAGCCTCCACGATCTCAATTTCGAAGCAACCGAGCTCCGATTAGGATTATTACCGCCAAGAAGTAGTACAGAGCAAGAACAACATTCACAATCACAAATCTCCGCCAAGCAGAGCAATAGCGAGTCCAGATCCGGAAGAACCGATTCTTCCATTTCGACTTCCACTACTAATCCTTCTTCAGATGCCGAGCATTGCTATGAACTCACGAAGGCGCAAGTGGTAGGATGGCCACCGGTGAGATCGTACAGGAAGAATGTGATAATTATTGAAAGAGAGAAGAAGAAGAAGAAGAAGACAGAGAAGAAGGAGATTGTGAACTATGGAATGTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTAAGGAAGATTGATCTCAAGCTTTATCAGAGCTATCAACAGCTTTTGGATGCTTTAGAAGACATGTTCAACTTCAAACTTGCTTGA

Protein sequence

MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTNPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKLA

Homology

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22E_VIGRR (Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-22
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQS----QISAKQSNSESRSGRTDSSISTSTTNPS 72
           +LN  ATELRLGL  P S   QE+   S    + S K+S+ E    R  S+I++ +++ +
Sbjct: 7   ELNLRATELRLGL--PGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSDST 66

Query: 73  SDAEH---CYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           + ++H     +  K QVVGWPP+RS+RKN +       ++KK E+ +    GMY+KVS+ 
Sbjct: 67  TTSDHNEDSVQPAKVQVVGWPPIRSFRKNSL-------QQKKVEQGD--GTGMYLKVSMA 126

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMF 153
           GAPYLRKIDLK+Y+SY +LL AL+++F
Sbjct: 127 GAPYLRKIDLKVYKSYPELLKALQNLF 142

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-22
Identity = 68/155 (43.87%), Postives = 94/155 (60.65%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQEQ---HSQSQISAKQSNSESRSGRTD 60
           M+    S++   +LN +ATELRLGL  P S   +++    S  + S + S+ ES S  +D
Sbjct: 1   MENSLGSYEK--ELNLKATELRLGL--PGSDEPEKRATARSNKRSSPEASDEESISNGSD 60

Query: 61  SSISTSTTNPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYG 120
            +   +   P+          KAQVVGWPP+RSYRKN +    ++KK++++E       G
Sbjct: 61  VTKEDNVVPPA----------KAQVVGWPPIRSYRKNNV----QQKKEEESEGN-----G 120

Query: 121 MYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMF 153
           MYVKVS+ GAPYLRKIDLK+Y+SY +LL ALE+MF
Sbjct: 121 MYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMF 132

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 63/144 (43.75%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 14  LNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSI-STSTTNPSSDAE 73
           +N +ATELRLGL      TE+       +S  +SN       T+  I ST  T  +S   
Sbjct: 11  VNLKATELRLGL----PGTEET------VSCGKSNKRVLPEATEKEIESTGKTETASPP- 70

Query: 74  HCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRK 133
                 KAQ+VGWPPVRSYRKN +          +T+K E    G YVKVS+DGAPYLRK
Sbjct: 71  ------KAQIVGWPPVRSYRKNNV----------QTKKSESEGQGNYVKVSMDGAPYLRK 127

Query: 134 IDLKLYQSYQQLLDALEDMFNFKL 157
           IDL +Y+ Y +L+ +LE+MF F +
Sbjct: 131 IDLTMYKQYPELMKSLENMFKFSV 127

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: AX22B_VIGRR (Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.5e-20
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTNPSSDAE 72
           DLN +ATELRLGL      TE+++ +  +  A   N++ R  R  S  S S +  S   +
Sbjct: 10  DLNLKATELRLGL----PGTEEKEDNNLRTHAVLRNNK-RQVRETSQDSVSISKASHHQQ 69

Query: 73  HCYELT----KAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAP 132
           H   ++    KA++VGWPP+RSYRKN +              +E    G++VKVS+DGAP
Sbjct: 70  HVETVSAPPPKAKIVGWPPIRSYRKNSV--------------QEGEGDGIFVKVSMDGAP 129

Query: 133 YLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           YLRK+DLK+Y  Y +LL ALE MF   +
Sbjct: 130 YLRKVDLKVYGGYPELLKALETMFKLAI 138

[Close]

BLAST of Cla003635 vs. Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.4e-20
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 14  LNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSES-RSGRTDSSISTSTTNPSSDAE 73
           +N + TELRLGL      T+    ++ ++S   +N++   S  T+  I +S+    +   
Sbjct: 5   VNLKETELRLGL----PGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPP 64

Query: 74  HCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYLRK 133
                 KAQ+VGWPPVRSYRKN I     + KK ++E +     G+YVKVS+DGAPYLRK
Sbjct: 65  R-----KAQIVGWPPVRSYRKNNI-----QSKKNESEHE---GQGIYVKVSMDGAPYLRK 124

Query: 134 IDLKLYQSYQQLLDALEDMFNFKL 157
           IDL  Y+ Y +LL ALE MF F +
Sbjct: 125 IDLSCYKGYSELLKALEVMFKFSV 131

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: E5GCU3_CUCME (Auxin-responsive protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ---EQHSQSQISAKQSNSESRSG-RT 60
           MKR  SSFQ+LHDLNFEATELRLGL      TEQ   E +S SQ+SAKQS SESRSG RT
Sbjct: 49  MKRQLSSFQNLHDLNFEATELRLGLPQTSCRTEQQPAEGNSHSQMSAKQSKSESRSGGRT 108

Query: 61  DS-SISTSTTNPSSD-AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIV 120
           DS SISTST + S D A+HC+E TK QVVGWPPVRSYRKNVII   +KKKKKK +KKEIV
Sbjct: 109 DSNSISTSTNSSSDDHADHCHEHTKTQVVGWPPVRSYRKNVIIETEKKKKKKKKKKKEIV 168

Query: 121 NY------GMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           N       GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALE+MFNFK+
Sbjct: 169 NMELGLMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEEMFNFKI 216

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: A0A0A0KKT1_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G166440 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.1e-50
Identity = 114/163 (69.94%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 2   KRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ----EQHSQSQISAKQSNSESRSG-RT 61
           ++  SSFQ+LH LNFEATELRLGL      TEQ    E+ S SQISAKQS SE+RSG RT
Sbjct: 3   RQRLSSFQNLHHLNFEATELRLGLPQTSCRTEQQPAEERSSHSQISAKQSKSETRSGGRT 62

Query: 62  DSSISTSTTNPSSD--AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEI- 121
           DS+   ++TNPSSD  A+HC+E TK QVVGWPPVRSYRKNVII   EKKKKK+    E+ 
Sbjct: 63  DSNSILTSTNPSSDNHADHCHEHTKTQVVGWPPVRSYRKNVIIETEEKKKKKEIVNMELG 122

Query: 122 VNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           +  GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALEDMFNFK+
Sbjct: 123 LMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEDMFNFKI 165

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: B9S4S2_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0991820 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-25
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISA-KQSNSE-SRSGRTDSSISTSTTNPSSD 72
           DLN +ATELRLGL P     +Q+Q + S     K+++ E S   RT S+I TS +   +D
Sbjct: 6   DLNLKATELRLGL-PGSDEPDQKQPTSSVTRGIKRASPELSEESRTRSNI-TSGSIVEND 65

Query: 73  AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYL 132
            EHC    KAQVVGWPP+RSYRKN            +T++ E    GMYVKVS+DGAPYL
Sbjct: 66  EEHCASPAKAQVVGWPPIRSYRKNYF----------QTKQSEGEGAGMYVKVSVDGAPYL 125

Query: 133 RKIDLKLYQSYQQLLDALEDMFNFKL 157
           RKID+K+Y SY +LL ALE+MF  K+
Sbjct: 126 RKIDIKVYNSYPELLKALENMFKLKI 139

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: A9PCG9_POPTR (Auxin-responsive protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-24
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 6   DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 65

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 66  DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 125

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MFN KL
Sbjct: 126 GAPYLRKIDLKVYKGYPELLEVVEEMFNSKL 143

[Close]

BLAST of Cla003635 vs. TrEMBL
Match: B9SZ70_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0484480 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 72/151 (47.68%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 7   SFQSLHDLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSNSESRSGRTDSSISTSTTN 66
           +F+   DLN EATELRL L P  ++  +E H  ++ + K+S  +    R++S  +++ +N
Sbjct: 2   AFERDGDLNLEATELRLAL-PGTTAATEESHVTAKCN-KRSFPDMNDDRSESRNNSNVSN 61

Query: 67  PSS-DAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 126
               D E     TKAQVVGWPPVRSYRKN         + +KTE +   N G+YVKVS+D
Sbjct: 62  DKKGDQETTSPPTKAQVVGWPPVRSYRKNCF-------QARKTEAEAAGN-GIYVKVSMD 121

Query: 127 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +L  ALEDMF FK+
Sbjct: 122 GAPYLRKIDLKVYKCYTELFQALEDMFKFKV 142

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|659073289|ref|XP_008436982.1| (PREDICTED: auxin-induced protein 22D-like [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MKRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ---EQHSQSQISAKQSNSESRSG-RT 60
           MKR  SSFQ+LHDLNFEATELRLGL      TEQ   E +S SQ+SAKQS SESRSG RT
Sbjct: 49  MKRQLSSFQNLHDLNFEATELRLGLPQTSCRTEQQPAEGNSHSQMSAKQSKSESRSGGRT 108

Query: 61  DS-SISTSTTNPSSD-AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIV 120
           DS SISTST + S D A+HC+E TK QVVGWPPVRSYRKNVII   +KKKKKK +KKEIV
Sbjct: 109 DSNSISTSTNSSSDDHADHCHEHTKTQVVGWPPVRSYRKNVIIETEKKKKKKKKKKKEIV 168

Query: 121 NY------GMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           N       GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALE+MFNFK+
Sbjct: 169 NMELGLMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEEMFNFKI 216

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|700195123|gb|KGN50300.1| (hypothetical protein Csa_5G166440 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 114/163 (69.94%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 2   KRHFSSFQSLHDLNFEATELRLGLLPPRSSTEQ----EQHSQSQISAKQSNSESRSG-RT 61
           ++  SSFQ+LH LNFEATELRLGL      TEQ    E+ S SQISAKQS SE+RSG RT
Sbjct: 3   RQRLSSFQNLHHLNFEATELRLGLPQTSCRTEQQPAEERSSHSQISAKQSKSETRSGGRT 62

Query: 62  DSSISTSTTNPSSD--AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEI- 121
           DS+   ++TNPSSD  A+HC+E TK QVVGWPPVRSYRKNVII   EKKKKK+    E+ 
Sbjct: 63  DSNSILTSTNPSSDNHADHCHEHTKTQVVGWPPVRSYRKNVIIETEEKKKKKEIVNMELG 122

Query: 122 VNYGMYVKVSLDGAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           +  GMYVKVSLDGAPYLRKIDLKLYQ YQQLLDALEDMFNFK+
Sbjct: 123 LMSGMYVKVSLDGAPYLRKIDLKLYQGYQQLLDALEDMFNFKI 165

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|255559921|ref|XP_002520979.1| (PREDICTED: auxin-induced protein 22E [Ricinus communis])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISA-KQSNSE-SRSGRTDSSISTSTTNPSSD 72
           DLN +ATELRLGL P     +Q+Q + S     K+++ E S   RT S+I TS +   +D
Sbjct: 6   DLNLKATELRLGL-PGSDEPDQKQPTSSVTRGIKRASPELSEESRTRSNI-TSGSIVEND 65

Query: 73  AEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLDGAPYL 132
            EHC    KAQVVGWPP+RSYRKN            +T++ E    GMYVKVS+DGAPYL
Sbjct: 66  EEHCASPAKAQVVGWPPIRSYRKNYF----------QTKQSEGEGAGMYVKVSVDGAPYL 125

Query: 133 RKIDLKLYQSYQQLLDALEDMFNFKL 157
           RKID+K+Y SY +LL ALE+MF  K+
Sbjct: 126 RKIDIKVYNSYPELLKALENMFKLKI 139

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|118484390|gb|ABK94072.1| (unknown [Populus trichocarpa])

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 6   DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 65

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 66  DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 125

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MFN KL
Sbjct: 126 GAPYLRKIDLKVYKGYPELLEVVEEMFNSKL 143

[Close]

BLAST of Cla003635 vs. NCBI nr
Match: gi|506954080|gb|AGM20676.1| (IAA4 [Populus tomentosa])

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 13  DLNFEATELRLGLLPPRSSTEQEQHSQSQISAKQSN-------SESRSGRTDSSISTSTT 72
           DLN EATELRLGL  P ++TEQ +      +  +SN       +E  +GR +SS S S+ 
Sbjct: 83  DLNLEATELRLGL--PGTATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESS-SVSSN 142

Query: 73  NPSSDAEHCYELTKAQVVGWPPVRSYRKNVIIIEREKKKKKKTEKKEIVNYGMYVKVSLD 132
           +  S  +     TK QVVGWPP+RSYRKN +          +  K E    G+YVKVS+D
Sbjct: 143 DKKSHEQETAPPTKTQVVGWPPIRSYRKNCL----------QARKLEAEAAGLYVKVSMD 202

Query: 133 GAPYLRKIDLKLYQSYQQLLDALEDMFNFKL 157
           GAPYLRKIDLK+Y+ Y +LL+ +E+MF FK+
Sbjct: 203 GAPYLRKIDLKVYKGYPELLEVVEEMFKFKV 220

The following BLAST results are available for this feature:

BLAST of Cla003635 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AX22E_VIGRR	2.4e-22	43.54	Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1	[more]
AX22D_VIGRR	3.1e-22	43.87	Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1	[more]
IAA4_ARATH	4.9e-20	43.75	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2	[more]
AX22B_VIGRR	6.5e-20	41.22	Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1	[more]
IAA3_ARATH	8.4e-20	42.36	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1	[more]

BLAST of Cla003635 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCU3_CUCME	1.1e-53	73.81	Auxin-responsive protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KKT1_CUCSA	7.1e-50	69.94	Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G166440 PE=3 SV=1	[more]
B9S4S2_RICCO	3.6e-25	50.68	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0991820 PE=3 SV=1	[more]
A9PCG9_POPTR	1.8e-24	47.02	Auxin-responsive protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9SZ70_RICCO	2.3e-24	47.68	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0484480 PE=3 SV=1	[more]

BLAST of Cla003635 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073289\|ref\|XP_008436982.1\|	1.5e-53	73.81	PREDICTED: auxin-induced protein 22D-like [Cucumis melo]	[more]
gi\|700195123\|gb\|KGN50300.1\|	1.0e-49	69.94	hypothetical protein Csa_5G166440 [Cucumis sativus]	[more]
gi\|255559921\|ref\|XP_002520979.1\|	5.1e-25	50.68	PREDICTED: auxin-induced protein 22E [Ricinus communis]	[more]
gi\|118484390\|gb\|ABK94072.1\|	2.5e-24	47.02	unknown [Populus trichocarpa]	[more]
gi\|506954080\|gb\|AGM20676.1\|	3.3e-24	46.36	IAA4 [Populus tomentosa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla003635	Cla003635	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla003635	Cla003635.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla003635.1.cds1	Cla003635.1.cds1	CDS
Cla003635.1.cds2	Cla003635.1.cds2	CDS
Cla003635.1.cds3	Cla003635.1.cds3	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 117..157 score: 14
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 13..152 score: 2.7
None	No IPR available	PANTHER	PTHR31734:SF11	AUXIN-RESPONSIVE PROTEIN IAA1-RELATED	coord: 13..152 score: 2.7
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 110..154 score: 1.1