Cla003541 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003541
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L22-like (AHRD V1 **** Q5ZDK4_ORYSJ); contains Interpro domain(s) IPR005727 Ribosomal protein L22, bacterial-type
Location	Chr1 : 14204533 .. 14206190 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTAGCTAATAAATCTGAGGAAGCAGTCTCATCTCCCCTGACCTCTGCTTTGGCTTTAAGCAGTGGAAAAGATGGAGATAAAAAAGACCAAAAAGTAGTCTGTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGGTGAAGTCTTTAGACTTATGCTTGTCACTTAGCTAAAGAGTATTTGACATAATCTTCCTCCCTAGAGATTGAAGGTTCGATTCCAATTTTCACATTTGTACTCAAATTTTTGAGTAAAAGTGATGAAAAGTCACTATTGAGTGAAACTTGTTATTGAAATTTGAGATATTGTAATTATAGAATTTGATTAAATCTGAAGTTTTTATGATTTTTAAGTTTTACATTATCAACTTACTAATTGGATTCTATATAATCTCTTGGCCTCGTTTCTCTGGGACCAACCTTTAGTTGTTTATTGACAGTTTTTTATTTTTCATTTTTAATGTTTAATTTTTTTTTAAATTTTAATTTAACTATATATATATATATATATAAAATATTGGGGTTGGACATTTTCTAATTGAATATCCTTCCTGTTTGGTCAAGATTTTAAACTCATTTTCTATAACTGAAAGATGGCTTCACACAGAAAAAACATAGACTCATTTTGGTTTATCTTTTAATTGAAAAGAATTAACGGGACATATTTGAATTTTTCTACCAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTCTATCAGGTGAAACACCATCTTACAGTGCTTTATGTACACCTTCTTTATCAATAGCTGTGATAAAATATTTCTTTGATTTCATTATTTGGGGGAGACTTAAGCTGATAAATAAACATACAAATACTTGAGTCTAGTCAACCAGTTTACCTTCTGGTATTCAACATATAAAAAAATTTAGTAGTTGGGGGATGCATTTTTCAGGAACTGGACTAGGTTGAGGAGTTTCGTTTGTTTTTCTTGTAAAAAAGGCCATTTGACTATAGGAAGTATAGTTAATGGTTCTAGAGCTGGAGACTATTTTGTTTTTGAAAAATTAGACATTAGCTTTGCAGGGTAATGTGAGTTCCTTCCATGTTATAAAGTGTACTCCCGTTTGTTTTGGAAGATTCTTTTGGTATTTCTAAGATTTACTGACGATGTTAAAATTTGTGTCGTGACATTGTTAAGGTCATCCACTCAGCCAAAGCAAACGCAACCCACAACCATGGAATGGATTCTGATCGGCTCCTTGTTGGTAAATAAAGCAATCAAAGGAACCATCTTTCATATTATAAGGTTTTGTTTATATGACTTCTTGTTATCTTGTACAGCTGAGGCATTTGTGGGTAAGGGATTCTTTAGGAAAAGATTATCATACCATGCTAAAGGAAAATGCGGAATCGAAGTTAGACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAGAGATAGCAAAGCTTAAAGTTAGCAATTTCCGCAAGCTTACCAAGCGTGAAAACCGACTTGTACCTCATAAACTTATTGAAACCACATCTATCTGGAACCGGAAGGGCAAAGCTAAAGTGAATGAAGAATGTTGA

mRNA sequence

ATGTTATTAGCTAATAAATCTGAGGAAGCAGTCTCATCTCCCCTGACCTCTGCTTTGGCTTTAAGCAGTGGAAAAGATGGAGATAAAAAAGACCAAAAAGTAGTCTGTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTCTATCAGGTCATCCACTCAGCCAAAGCAAACGCAACCCACAACCATGGAATGGATTCTGATCGGCTCCTTGTTGCTGAGGCATTTGTGGGTAAGGGATTCTTTAGGAAAAGATTATCATACCATGCTAAAGGAAAATGCGGAATCGAAGTTAGACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAGAGATAGCAAAGCTTAAAGTTAGCAATTTCCGCAAGCTTACCAAGCGTGAAAACCGACTTGTACCTCATAAACTTATTGAAACCACATCTATCTGGAACCGGAAGGGCAAAGCTAAAGTGAATGAAGAATGTTGA

Coding sequence (CDS)

ATGTTATTAGCTAATAAATCTGAGGAAGCAGTCTCATCTCCCCTGACCTCTGCTTTGGCTTTAAGCAGTGGAAAAGATGGAGATAAAAAAGACCAAAAAGTAGTCTGTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTCTATCAGGTCATCCACTCAGCCAAAGCAAACGCAACCCACAACCATGGAATGGATTCTGATCGGCTCCTTGTTGCTGAGGCATTTGTGGGTAAGGGATTCTTTAGGAAAAGATTATCATACCATGCTAAAGGAAAATGCGGAATCGAAGTTAGACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAGAGATAGCAAAGCTTAAAGTTAGCAATTTCCGCAAGCTTACCAAGCGTGAAAACCGACTTGTACCTCATAAACTTATTGAAACCACATCTATCTGGAACCGGAAGGGCAAAGCTAAAGTGAATGAAGAATGTTGA

Protein sequence

MLLANKSEEAVSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLIETTSIWNRKGKAKVNEEC

Homology

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BLAST of Cla003541 vs. Swiss-Prot
Match: RL22_SINMW (50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-20
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 37  KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 96
           K ++ QA+ + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVRKTLESAIANA 70

Query: 97  THNHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEA 155
            +NH +D D L+VAEAFVGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

[Close]

BLAST of Cla003541 vs. Swiss-Prot
Match: RL22_RHIME (50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-20
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 37  KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 96
           K ++ QA+ + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANA 70

Query: 97  THNHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEA 155
            +NH +D D L+VAEAFVGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

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BLAST of Cla003541 vs. Swiss-Prot
Match: RL22_MARMM (50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) GN=rplV PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.1e-20
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 39  SKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 98
           ++ +A L+ I+ SP+K+NLVAAL+RG +VE AL  L+ + KR SK V + + SA ANA +
Sbjct: 13  NEARAKLRMIRTSPQKLNLVAALIRGKKVERALADLEFSRKRISKEVKKTLESAIANAEN 72

Query: 99  NHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRE 148
           NHG+D D L+V+EAFVGK    KR    A+G+    ++P   LT+V+RE
Sbjct: 73  NHGLDIDSLVVSEAFVGKNLVMKRFRARARGRGAKILKPFSELTIVVRE 121

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BLAST of Cla003541 vs. Swiss-Prot
Match: RL22_AGRFC (50S ribosomal protein L22 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplV PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 37  KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 96
           K ++ QAI + ++ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAIARTLRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANA 70

Query: 97  THNHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEA 155
            +NH +D D L+VAEA+VGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDALVVAEAYVGKSITMKRFHARGRGRASRIEKPFAHLTIVVREVEEKGEA 128

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BLAST of Cla003541 vs. Swiss-Prot
Match: RL22_RHILO (50S ribosomal protein L22 OS=Rhizobium loti (strain MAFF303099) GN=rplV PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 39  SKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 98
           ++ +A+L+ I+ SP+K+NLVAAL+RG +V  AL  L+ + KR S TV + + SA ANA +
Sbjct: 13  NEARAVLRTIRISPQKLNLVAALIRGKKVATALSDLEFSAKRISGTVKKTLESAIANAEN 72

Query: 99  NHGMDSDRLLVAEAFVGKGFFRKRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEA 155
           NH +D D L+VAEA+VGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 73  NHDLDVDALVVAEAYVGKSIVMKRFHARGRGRASRIEKPFSHLTIVVREVEEKGEA 128

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BLAST of Cla003541 vs. TrEMBL
Match: A0A0A0LVB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153000 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.8e-96
Identity = 181/198 (91.41%), Postives = 191/198 (96.46%), Query Frame = 1


Query: 1   MLLANKSEEAVSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 60
           MLLA+K EEAVSSPLTSALALSSGKDGDK DQKV+CK S+VQA+LKGIKQSPKKVNLVAA
Sbjct: 74  MLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKGIKQSPKKVNLVAA 133

Query: 61  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 120
           LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKG FR
Sbjct: 134 LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGLFR 193

Query: 121 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 180
           KRLSYHAKG+CG+EV+PECRLTVVLRETTPEEEA+IAKLKVSNFRKLTKRE++LVPHKLI
Sbjct: 194 KRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKLTKREHQLVPHKLI 253

Query: 181 ETTSIWNRKGKAKVNEEC 199
           ETT IWNRKGKAK N EC
Sbjct: 254 ETTPIWNRKGKAKANTEC 271

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BLAST of Cla003541 vs. TrEMBL
Match: D7U8M4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00620 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.4e-80
Identity = 156/193 (80.83%), Postives = 173/193 (89.64%), Query Frame = 1


Query: 2   LLANKSEEAVSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAAL 61
           LLA+     V+SPLT ALAL+ GK    +DQKVV KPSKVQA+LKGIKQSPKKVNLVA L
Sbjct: 76  LLADSDVTPVASPLTPALALNGGKT---EDQKVVSKPSKVQAVLKGIKQSPKKVNLVAEL 135

Query: 62  VRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFRK 121
           VRGMRVEDAL+QLQLTVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKGFF+K
Sbjct: 136 VRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 195

Query: 122 RLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLIE 181
           R+SYHAKGKCGI+VRPECRLTVV+RE TPEEEA++AKL+VSNFRKL+KRE RLVPH+LIE
Sbjct: 196 RVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRKLSKREKRLVPHQLIE 255

Query: 182 TTSIWNRKGKAKV 195
           TTSIWNRK    V
Sbjct: 256 TTSIWNRKANGGV 265

[Close]

BLAST of Cla003541 vs. TrEMBL
Match: A0A068USG5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031336001 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.4e-79
Identity = 156/193 (80.83%), Postives = 174/193 (90.16%), Query Frame = 1


Query: 2   LLANKSEEA-VSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 61
           LLA+ S E  +SSPLT ALALS GK    + +K V KPSKVQA+LKGIKQSPKKVNLVAA
Sbjct: 76  LLADSSNETPISSPLTPALALSGGK---AEPEKPVSKPSKVQAVLKGIKQSPKKVNLVAA 135

Query: 62  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 121
           LVRGMRVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKGF+R
Sbjct: 136 LVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFYR 195

Query: 122 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 181
           KR+SYHAKG+CG++VRPECRLTVVLRE TPEEEAEIAKL+V NFRKLTKRE RLVPH+LI
Sbjct: 196 KRVSYHAKGRCGVKVRPECRLTVVLREITPEEEAEIAKLRVHNFRKLTKREKRLVPHQLI 255

Query: 182 ETTSIWNRKGKAK 194
           ETT IW+RK K+K
Sbjct: 256 ETTPIWSRKSKSK 265

[Close]

BLAST of Cla003541 vs. TrEMBL
Match: A0A059AUW6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00426 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.5e-78
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 1


Query: 2   LLANKSEEA-VSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 61
           LLA+ S+ A +SSPLT  L LSSG     + QKVV KPSKVQA+LKGIKQSPKKVNLVAA
Sbjct: 75  LLADSSDAAPISSPLTPTLQLSSGT---VESQKVVSKPSKVQAVLKGIKQSPKKVNLVAA 134

Query: 62  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 121
           LVRGMRVEDAL+QLQ+TVKRA+KTVYQVIHSA+ANATHNHG+D ++LL+AEAFVGKGF++
Sbjct: 135 LVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDPEKLLLAEAFVGKGFYQ 194

Query: 122 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 181
           KR+SYH+KG+CGI+VRPECRLT+V+RE T EEEAEIAKL+VSNF+KLTKRE RLVPHKLI
Sbjct: 195 KRISYHSKGRCGIKVRPECRLTIVVREITAEEEAEIAKLRVSNFKKLTKRERRLVPHKLI 254

Query: 182 ETTSIWNRKGKAKVNEE 198
           E+T IWNRKGKA  NEE
Sbjct: 255 ESTPIWNRKGKAGRNEE 268

[Close]

BLAST of Cla003541 vs. TrEMBL
Match: M5VRJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009843mg PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.0e-78
Identity = 154/191 (80.63%), Postives = 170/191 (89.01%), Query Frame = 1


Query: 7   SEEAVS-SPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAALVRGM 66
           +EE  S SPLT  L  ++GKD + K QK + KP KVQAILKGIKQSPKKVNLVAALVRGM
Sbjct: 80  AEETPSPSPLTPLLTSNTGKDEEHK-QKSLTKPDKVQAILKGIKQSPKKVNLVAALVRGM 139

Query: 67  RVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFRKRLSY 126
           RVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKG+F+KRLSY
Sbjct: 140 RVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGYFKKRLSY 199

Query: 127 HAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLIETTSI 186
           HAKGKCG++VRPECRLTVV+RE TP+EEAEIAKLKV NF KLTKRE RLVPHKLIETT I
Sbjct: 200 HAKGKCGVKVRPECRLTVVVREITPDEEAEIAKLKVKNFVKLTKRERRLVPHKLIETTPI 259

Query: 187 WNRKGKAKVNE 197
           WNRKGKA+  E
Sbjct: 260 WNRKGKARERE 269

[Close]

BLAST of Cla003541 vs. NCBI nr
Match: gi|700209808|gb|KGN64904.1| (hypothetical protein Csa_1G153000 [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 4.1e-96
Identity = 181/198 (91.41%), Postives = 191/198 (96.46%), Query Frame = 1


Query: 1   MLLANKSEEAVSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 60
           MLLA+K EEAVSSPLTSALALSSGKDGDK DQKV+CK S+VQA+LKGIKQSPKKVNLVAA
Sbjct: 74  MLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKGIKQSPKKVNLVAA 133

Query: 61  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 120
           LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKG FR
Sbjct: 134 LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGLFR 193

Query: 121 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 180
           KRLSYHAKG+CG+EV+PECRLTVVLRETTPEEEA+IAKLKVSNFRKLTKRE++LVPHKLI
Sbjct: 194 KRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKLTKREHQLVPHKLI 253

Query: 181 ETTSIWNRKGKAKVNEEC 199
           ETT IWNRKGKAK N EC
Sbjct: 254 ETTPIWNRKGKAKANTEC 271

[Close]

BLAST of Cla003541 vs. NCBI nr
Match: gi|1009164334|ref|XP_015900442.1| (PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 318.9 bits (816), Expect = 6.1e-84
Identity = 163/197 (82.74%), Postives = 180/197 (91.37%), Query Frame = 1


Query: 2   LLANKSEEA-VSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 61
           LLA+ SEE  V SPLT  LAL+SGKD D+K QK + KPSKVQA+LKGIKQSPKKVNLVAA
Sbjct: 76  LLADASEETPVRSPLTPVLALNSGKDEDQK-QKALSKPSKVQAVLKGIKQSPKKVNLVAA 135

Query: 62  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 121
           LVRGMRVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKGFF+
Sbjct: 136 LVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFK 195

Query: 122 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 181
           KR+SYHAKGKCGI+VRPECRLTVV+RETTPEEEAEIA+L+V NFRKLTKRE RLVPHKLI
Sbjct: 196 KRVSYHAKGKCGIKVRPECRLTVVVRETTPEEEAEIARLRVHNFRKLTKRERRLVPHKLI 255

Query: 182 ETTSIWNRKGKAKVNEE 198
           ETT +WNRKGK K + E
Sbjct: 256 ETTPVWNRKGKGKASHE 271

[Close]

BLAST of Cla003541 vs. NCBI nr
Match: gi|225439305|ref|XP_002267832.1| (PREDICTED: 39S ribosomal protein L22, mitochondrial [Vitis vinifera])

HSP 1 Score: 305.1 bits (780), Expect = 9.2e-80
Identity = 156/193 (80.83%), Postives = 173/193 (89.64%), Query Frame = 1


Query: 2   LLANKSEEAVSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAAL 61
           LLA+     V+SPLT ALAL+ GK    +DQKVV KPSKVQA+LKGIKQSPKKVNLVA L
Sbjct: 76  LLADSDVTPVASPLTPALALNGGKT---EDQKVVSKPSKVQAVLKGIKQSPKKVNLVAEL 135

Query: 62  VRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFRK 121
           VRGMRVEDAL+QLQLTVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKGFF+K
Sbjct: 136 VRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKK 195

Query: 122 RLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLIE 181
           R+SYHAKGKCGI+VRPECRLTVV+RE TPEEEA++AKL+VSNFRKL+KRE RLVPH+LIE
Sbjct: 196 RVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRKLSKREKRLVPHQLIE 255

Query: 182 TTSIWNRKGKAKV 195
           TTSIWNRK    V
Sbjct: 256 TTSIWNRKANGGV 265

[Close]

BLAST of Cla003541 vs. NCBI nr
Match: gi|661885956|emb|CDP10573.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 303.1 bits (775), Expect = 3.5e-79
Identity = 156/193 (80.83%), Postives = 174/193 (90.16%), Query Frame = 1


Query: 2   LLANKSEEA-VSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 61
           LLA+ S E  +SSPLT ALALS GK    + +K V KPSKVQA+LKGIKQSPKKVNLVAA
Sbjct: 76  LLADSSNETPISSPLTPALALSGGK---AEPEKPVSKPSKVQAVLKGIKQSPKKVNLVAA 135

Query: 62  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 121
           LVRGMRVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D DRLLVAEAFVGKGF+R
Sbjct: 136 LVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFYR 195

Query: 122 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 181
           KR+SYHAKG+CG++VRPECRLTVVLRE TPEEEAEIAKL+V NFRKLTKRE RLVPH+LI
Sbjct: 196 KRVSYHAKGRCGVKVRPECRLTVVLREITPEEEAEIAKLRVHNFRKLTKREKRLVPHQLI 255

Query: 182 ETTSIWNRKGKAK 194
           ETT IW+RK K+K
Sbjct: 256 ETTPIWSRKSKSK 265

[Close]

BLAST of Cla003541 vs. NCBI nr
Match: gi|702433092|ref|XP_010069336.1| (PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Eucalyptus grandis])

HSP 1 Score: 299.3 bits (765), Expect = 5.0e-78
Identity = 153/197 (77.66%), Postives = 177/197 (89.85%), Query Frame = 1


Query: 2   LLANKSEEA-VSSPLTSALALSSGKDGDKKDQKVVCKPSKVQAILKGIKQSPKKVNLVAA 61
           LLA+ S+ A +SSPLT  L LSSG     + QKVV KPSKVQA+LKGIKQSPKKVNLVAA
Sbjct: 75  LLADSSDAAPISSPLTPTLQLSSGT---VESQKVVSKPSKVQAVLKGIKQSPKKVNLVAA 134

Query: 62  LVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRLLVAEAFVGKGFFR 121
           LVRGMRVEDAL+QLQ+TVKRA+KTVYQVIHSA+ANATHNHG+D ++LL+AEAFVGKGF++
Sbjct: 135 LVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDPEKLLLAEAFVGKGFYQ 194

Query: 122 KRLSYHAKGKCGIEVRPECRLTVVLRETTPEEEAEIAKLKVSNFRKLTKRENRLVPHKLI 181
           KR+SYH+KG+CGI+VRPECRLT+V+RE T EEEAEIAKL+VSNF+KLTKRE RLVPHKLI
Sbjct: 195 KRISYHSKGRCGIKVRPECRLTIVVREITAEEEAEIAKLRVSNFKKLTKRERRLVPHKLI 254

Query: 182 ETTSIWNRKGKAKVNEE 198
           E+T IWNRKGKA  NEE
Sbjct: 255 ESTPIWNRKGKAGRNEE 268

The following BLAST results are available for this feature:

BLAST of Cla003541 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL22_SINMW	2.1e-20	44.07	50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 ...	[more]
RL22_RHIME	2.1e-20	44.07	50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1	[more]
RL22_MARMM	8.1e-20	47.71	50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) GN=rplV PE=3 SV=1	[more]
RL22_AGRFC	1.4e-19	43.22	50S ribosomal protein L22 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=r...	[more]
RL22_RHILO	1.8e-19	43.97	50S ribosomal protein L22 OS=Rhizobium loti (strain MAFF303099) GN=rplV PE=3 SV=...	[more]

BLAST of Cla003541 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVB7_CUCSA	2.8e-96	91.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153000 PE=3 SV=1	[more]
D7U8M4_VITVI	6.4e-80	80.83	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00620 PE=3 SV=...	[more]
A0A068USG5_COFCA	2.4e-79	80.83	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031336001 PE=3 SV=1	[more]
A0A059AUW6_EUCGR	3.5e-78	77.66	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00426 PE=3 SV=1	[more]
M5VRJ8_PRUPE	6.0e-78	80.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009843mg PE=3 SV=1	[more]

BLAST of Cla003541 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209808\|gb\|KGN64904.1\|	4.1e-96	91.41	hypothetical protein Csa_1G153000 [Cucumis sativus]	[more]
gi\|1009164334\|ref\|XP_015900442.1\|	6.1e-84	82.74	PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Ziziphus jujuba]	[more]
gi\|225439305\|ref\|XP_002267832.1\|	9.2e-80	80.83	PREDICTED: 39S ribosomal protein L22, mitochondrial [Vitis vinifera]	[more]
gi\|661885956\|emb\|CDP10573.1\|	3.5e-79	80.83	unnamed protein product [Coffea canephora]	[more]
gi\|702433092\|ref\|XP_010069336.1\|	5.0e-78	77.66	PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001063	Ribosomal_L22
IPR005727	Ribosomal_L22_bac/chlpt-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU37149	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003541	Cla003541.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37149	WMU37149	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	GENE3D	G3DSA:3.90.470.10		coord: 40..149 score: 1.3
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 47..146 score: 1.3
IPR001063	Ribosomal protein L22/L17	unknown	SSF54843	Ribosomal protein L22	coord: 37..148 score: 1.57
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	HAMAP	MF_01331_B	Ribosomal_L22_B	coord: 39..148 score: 20
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	PANTHER	PTHR13501	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	coord: 27..189 score: 6.2
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	TIGRFAMs	TIGR01044	TIGR01044	coord: 44..144 score: 1.4
None	No IPR available	PANTHER	PTHR13501:SF2	39S RIBOSOMAL PROTEIN L22, MITOCHONDRIAL	coord: 27..189 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003541	Cla97C01G011760	Watermelon (97103) v2	wmwmbB250
Cla003541	Csa1G153000	Cucumber (Chinese Long) v2	cuwmB042
Cla003541	MELO3C004760	Melon (DHL92) v3.5.1	mewmB159
Cla003541	ClCG01G012560	Watermelon (Charleston Gray)	wcgwmB158
Cla003541	CSPI01G14420	Wild cucumber (PI 183967)	cpiwmB046
Cla003541	Cucsa.199960	Cucumber (Gy14) v1	cgywmB392
Cla003541	Lsi03G001010	Bottle gourd (USVL1VR-Ls)	lsiwmB260
Cla003541	CsGy1G014350	Cucumber (Gy14) v2	cgybwmB043
Cla003541	MELO3C004760.2	Melon (DHL92) v3.6.1	medwmB155
Cla003541	CsaV3_1G014590	Cucumber (Chinese Long) v3	cucwmB049
Cla003541	Bhi08G000070	Wax gourd	wgowmB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003541	Cucurbita moschata (Rifu)	cmowmB154
Cla003541	Cucurbita moschata (Rifu)	cmowmB186
Cla003541	Cucurbita pepo (Zucchini)	cpewmB518
Cla003541	Cucurbita maxima (Rimu)	cmawmB168
Cla003541	Cucurbita maxima (Rimu)	cmawmB199