CSPI01G14420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G14420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	50S ribosomal protein L22, putative
Location	Chr1 : 10074977 .. 10084877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTTAAAATTAAAAATTCATTTTAAACCTAATGTAAACAGTTCTATGTGGGTCGCTCATTCCCTCGCCTTCTCTCCCTCTTCCGGCTGATCTCCCTCCCTCAACCTCCCCGCCGTCGACCCTTCCGCCACCCACTCTCTTTGACGACGCCTCCTCAGCCTCCCTCTAGTTCCTTCTGATTTGAAATATTCCCGAATTCAATTTCCTAGCGGAGGGTGAGTTTTTTTTTTTTTTTTTTGTTGCAATGTGGAGTGAGCTGCTGCAGTTTTGATTATGTGTTGAATTTTTTCTTTTTCCCGTTGAGTTCTTAAAATTGACGGAGTCTTGAACTGAGGTGAATGCTGTGATAGGAGACGAAAGTGTGGATTTTGTTGTAATAGGAAGTGAAGTGATGGGGTCCTTTTATCTGTAGTTTCTTGTATTGAATTTTTAAGTTGTCTGTTAGGGAATTGACTATGTTCACCAATTGATGATCATGTTTTCTTTTCTTTTGGTTTCAGGACTTCATTTCTTTGGTGATTTTTCATTCGACCAAGCAATTTCGTTGTCATGGTTGGTTGGCAGAGATGTTTACGGTCCATGCTTGGCCATTTGCAAAACAAAGTGGAATTGAGTTACAATGCAGCTTCCAACTCTAGTTATCGTTTGCAATCTTCTCTTTCAAATGGTCAGTTATATTTTCTTCCGATTGAACGTATGAATCGCACAACACTTTCCTCTAGCCCATTCAAACTCTAGTTTTCATCTAAGTTTTTTTTTTTTTAAAAAAATATTTACTAGTGTTTGTGGTTTTTGTATGAGGTGCATGCTTGGATTAGTTAGTCTCATGCTTTTTACTCTTGCACTAACTACTAAGTCAATTTAATTCCTAAATTTTTGAATTTCCTTCAACCAAACTTTTACCTTAAATCAGTTGGAATTATTTTGAGATACAACTTGATGCTTTTTGGAACTAACTTTTTTTTTTTTTTTTGGTTTTATTCTTGAAGTTGCCATTGGGTCCTTTTTAATACTTTTTGTTATACCTCCCAAAATCATTGAGGTATGGATATTGTTTTGATGAAGTATGGAATGACCTTAACTCTTTCAATCTACTTCAAAGTTGTTCTTAAAAGTTCAAAGTGGAGAAAAAAAAACGCAGGTTGTTTTTCTAAACAAACGACCTGATAAGCAAATAATTGGCATTGATTAGCTAAAGCATAGAACGCTTAACTTTCAAGCTAAGCTTTCCAATAAACTTGAAGAGTTGCAACGCTTGGAACTTCAAAAGTTATTTGGATCCTAAAAGTCATAATGAATCTAGAAACTCAGATTCATTCAAATATTTAATGAATTATGTACTTATTTAATGTCACGTGTTCTCATTAGTTATAGTAGTTGAAAGGGCATAAAATTAAATGATGTGTTCTTTCAATTTAAATTTTAAATTAATATAAATAGGGTTGTAGTTTCCACATTTTAGGAAGAGTATCAATATTGAAAAACTTTTGTTTATTCAACCCTTTTGATGTTAAAAATCAATTTATTGGATTAGTCTTGATCAAGCTAATCTTGCAATGAGTTGTCTTAGGATCTAAAAGTGACCATCATAGATTTTAGGTTTGATTCAAGTTAGCATGTGAGTTTTTGCAAGGATCCTAGAAGGACCTCTAGCTTTGCATCTAACAAACATAGTGGGCGCTTATCATGACCCTTTGATTCAGACATTGTGAAAACCTTTCTCTCAGTGCTCTTCCCCCCCTCCCCCCATTCATAGCAGGTGGCCTTGGCCGATCGCCACTCTCTTCTCCTACCCCTGCCTCTGACCACCCTCTCATCTCTGTTCATTATGGTTCAACATATGCAAGAAGATCCTGGCCATTGGCCTCAAAGCTTTCTCCATTAAGGATGAAGCTAGTAATGGGAATCATGCTTGCATCATAGGTGATAGGACTTAAGAAGCATGCAATCTTCGCTCATCAACTCCCCCATTGGTGGATGTTGTGGAGGTCTCATAGACATTTCTAAGAAACCTCATAGACATCCTATCTTTTCCATACTCTATGACATCCTATCTTTTCCATACTCTATGACATTGTTCTAAATTGGGTCCTTCCTTTCGATTGGCTTAAATACCCTTTCTCTTCTCTCTAGCCATCTTATAAGCTAAAGGTTTCAGTCTGAATTGGAGAACACTTTGGATTAACTTTGAAGAAGTAGCATCCCTTAGTGGGCCTCTTCTGCTGTATTCTTTTTTTGGAATGTGGAGGGAGACATGGATCACATGCTTTAATGTTGTGGATTTGTGGTGTTTTTGTAGAATGTCTTTTCCTAGGAGTTCGGTTTAGAGTAGTATTGGAGACTCAATTTATGATTCCTTCCCCATTCATCTTTTAGGAAGAATGGTCATTTTTTATGGTTTGAGGGGGTATGTGCTCTGTTATGGGGTCCTTGGGGGAGAGAAATAACAAAGCTTTTAGAGTTGCTGTGAGGGACTATAATGATGTTTGGTTCTTGGTGAGTTTTCATTGTTTTCTTTGAGCCTTGATTTCAAAGATTTTTTGTAAGTACTCTACACACAATATTTACCTGGTTGGAATCTCTTTAGTCTTTCTACAGTAGGATTTCCGGAGAATGACTGTTTCTGCAAAGTTTGGCTCCAAGGCTTTAAATAAGCACCTGGCACTGCTTCTCTCCACAACAGTCGAGGCCCAAGGAAGAACATTATGAAACAAGCAACAGTCCTTAATCCATGATATTGTATTATCCAAAGCTGAGAATGGGGCTACTACAATATTTTGGCGTGATCAGTACTTCAAGGAAGCTTTTTGTTTAATAACTTCCTCTTGCTCTCCAGCAGAAAGATGGCTTCTGCCAAAGATTTATGGAGGGTTGATTTGGCTTTCTAGTATCTAGATTTCGTTTGAAATTTGAGTTACTAAGAAGTTCCTGAATGGGTTGAGTTGAGCCTTTTATTATTCAAACTCTGTTTAGCCAATAAGGATGACATGTGCGTGTGTCATCTTGGAAAATATGGGGTCATTTTCATGAAAGCATTACTACGAAGTTTTGATCATTCCTCAATGTGTGATTTTCTTCTATTCAATAAAGCTATTTGGTATAATATCTTTCATTTTATTTCAATGAAAGCTTTACTTTTAGTTGTACACGAAGGTCATTGTGCATAATGTTTACCTGAAAAAGATAGAATTCTAATTTATTCTTTGGGAGCTATATCACAGGGAAATAAACAAATATGATAGGCTTTCAAATCATCTCCTTGACACAACTCTTTCCCCAAATCAATGCATTCCTTTAGAAACATGATTCGGAGTCAATAGAGCCACATTTTCATAACTTGCCCTTTTTGTTCACAGTTTTTGGAAGGATATGTTGGTGACACTCAATTGGTTGGTGGTCCCTCTAAATGATCCTTCCATTCTTCAAAACCGTTTTCTCTAGGGATATCCTTTTAGAGACGAGAACGAGATCCTATGGAATAATTTATTTTGTTATTTTTTCTTGTACTTTTCTGTAGTTAGTATGGTTAGAAAGAAATTAAAGGATTTTTGGAACCAAGGAAAGGGTCTATGTGGACTTTTTTGACAATATTCTTTTTTGCCTTTATCTTGCTCTAATTGTAAATTGAATTCTCCTAGTTTTGCCTCTCTTTTGTCCCATTGAAGAAGTTCAATGAAACTTCTTTGGATTCTGTTTTATTCCTCGTCTGTTTTCATTTATCTTAATTTAATTTAAATTTCATACATCTTTGAAATTATTTCTTATATAGAAAAACTTCTGGTTCAAATGTTGAATTTAGCAAATATGAGTTTTTGGGCATTTACTTGGACATCTCCTCCATGGACCACTGCCTCTTTCGTTGGCTGCAAAATTGGTGTTTGGCCTAACTCTTACCTGTGCCTTCCCCTTGGTGGAATACTGTGCTCACTCACCTTTCCAGAGCCTATTGTTGAGAAAGTTGAGAGTAAGCTCAGAAATTGAGAGCATGCCTTTAGATTGAAAGGTGGAGTCTAACTGACTAACTCTTTCCAAAGCCACCCTATCTCCAAAATCGCCCCGAAGATTGAAAAGCTCAGAGGAAAGTTTGTGGGGAGGTCCCATATGACTGGTGGCTCTCACCTCATCCAATGGAAGAAGGGTCAAAAGCCTTTATCCCGTGGTGGCTCGGTATTGAATATTGATCATATCTAGCCAAATGAATTTGGAGATACATGGAAAATGCAAGGTTATTGAAGCTAAATATGGCCTTTCAAAGCAGGCTGAAGTAGTCATCCATAGCTTTATGATGAAAGTATGATTAAGGTAATTTAGATAAATTCCTAGGTTTCTGTTCTGCAGCTTCAGTTGGTCCTTGGCAGTCCCTTCAAGTTTGGCTGATTTTAGTATGTAAATATTCTTGCGGGACCCTTTAAGGGAGGAGATGCTTGGAAGCTGTGGCTTGAAAGGAATAACAACACTTTCAAGTGCTCTGAACAATATTTTGCTGCATCAAATTCTGTCATCTTTATGGCTCTTTACTGGTGTAAAGGATCACATCCTTTCTCAATGTCTTGATACTTTTGGGCAGATTTTTTTTCTTTTGTAAATCCATTTTTGTGCTTTTGGGACTCTTCTCCTGTTTTATAATTATTTTGTTTGTCAGACAAATCATTTCCTCTCAAAAGCAAAAAGAAAAGAAAAATGAAAAGTGAAAAAGGAAGAGAGATCGTATACGGCTGTTATGGTGGGAATGCAATAAAAGAGGTTTTAAAGATGAAGTTGATGAGATAGACAGGCGTTAGAGTAAAAAAATTTATGGTTATTATGCCGTCGTGGAATATTTGATAACCCTTCCCTTACCACTTTATTGGATTGGTTGCTATCCTAGTAACTCATCTTTCTAAGAGGACTCCCTTAAAGTGTTTATCCTATTAATTAGTAACTACAGAAATGGTTTGCATCTGACTAAAATCAGTAGAACCACAACAGAATCATAAACTGAAGTTGCTGAGTTGCACCAATTTCTTATGCAGGGGAATTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAAATGGTATACATGGCAACCATACCATCCCTTGAATTTCTATGAAAATAATTTTTGTTTGAAGAATTTTTTTATGAAAACAAATCTTTGGAGTATGTGTTTTTATTTTACAAATCACTTGAATTCTAATTTCTGAAAATGTCTTTGCCGTATTTTACTTTCTTCCTTTTATAGGGAATTTCCAGTTCAAGGATGCTATTGGCAGATAAACCTGAGGAAGCAGTCTCATCTCCTCTGACATCTGCTTTGGCTTTAAGCAGCGGAAAAGATGGAGATAAAACAGACCAAAAAGTAATCTGTAAACGTTCCCAAGTCCAAGCTGTATTAAAGGGAATCAAACAGGTGAAGTCTTTGGACTATTCTTGTCACTTGCACACCAAAATCTTGAGTAAAAGCGGTGAAAGTCATGAGGGTGGAACTTGTTATTGAAAAACGAGGCTTTGTAATTATAGAATTTGATTAAATCTGAAGTTTTATGTTTTTAAGTCATAGTTATCAAAATGCTAATTGGATTGTATAAATTCTGTTAGCCTCATTTCTCTAGGGCCAACCTTTAGTTGTGTTAGAAATAATGAGCTTAGGTCATGGTGAAAGCCCATGGGTAGTTAAGACTTACTTTGCCCTAACTTTTTATTCTTTTCAAGGCTCGTGTTGTCTAGAAATTTCCCCCCTTTGTACCTTTATGAATCATTAGAAAATAATAAGTCTTTCAGCACCGTACTTTTCTTCCTGTACTAGGGTTTGACATAAATTTGTGTGTTCTTTGTCTCTACTTTCAATGAGTTGTTTATTGAAAGTTTTTTGGGTTGGAGATTGAGATTGTAATTGAAATATCCTCCCCGTTTTCTTGTCAAGTTTTATAATGCATTTTATATAACTGAAAGATGGCTTCCACGAAAAAGGTGGACTCATTTAGGTTTATCTTTTATTTGAAAAGAATTAATGGGACTGTTGCATTTGAATTTTTCTTCCAGAGTCCCAAAAAGGTCAACTTAGTTGCTGCTCTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTTTATCAGGTGAAACATTATCTTAGGATGCTTGATGTACACCTCGTTTATCAATCACTGTGTTTGAATAATTCTTTGATTTCATTATTTGGGGGAAACTTAAGCTGAGAAATAAACATACAATTACTTGAGTTTAGTCAACCAGTTTAGCTTCTATTATAGACAATTTTGATATATAAAAAAGATTTAGTAGCGGGAGGATGCATTGTTTAGCCACTGGATGAGGCTGAGAAGTTTTGTTTCGTTGTTCTTGCAAAAAAAGGTCATTTGACAATAAGTATGGTTAATGGTTCTAGGGCTTGACACTATTTGGTTTTTAAAAGTTAGACACCGACTTTGCAAGGTACTGTGAATTCCTTCCATGTCATAAATTGTACAAAAGAAGCATGAGCACTCTAGCTTGATTAGCTTGTCCGTGTCAACATGTGTCGAGCACTTGGAAGTTGGGCATTTTGATTTGATGGCCTAAAATCCAATACTTAGGCCATCAAATCTTGAGTAAAGGGGTAGAAGCAGATGAGGAAAAAATTCGAAGTGTGGTGAATTGGCCTCAACCTAAAGACATGATCGGACTGAGAGGCTTTTTGGGTTTGACCGGGTATTACTGAAGGTTTGTAAAAAGGGTACGGAGAAATTACAGCACCCTTAACCAAACTATTACAGTAGAACTCTTTTAGATGGAGTGAGGAAGCTACGGAAACTTTTGAGAAACTAAAACTAGCAATGACAACTATCCTTGTGTTAGCCTTACCCGATTGGTCCCTCCCATTCATGCATCTGGAATTGGGCTAGGAGCAGTGCTTTCCCAAAATGGCCATCCTATTGCATTTTTTAGCCATAAATTGTCCCTAAGAGTCCAAGCTAAATCCTTCTATGAGAGAGAACTGATGGCCTTGTCCTTTCTGTTAAAAAACGGAGGTATTATCTTTTGGGAAAGAAGTTCACGATAATATCTGACCAAAAAGCCTTGAAATTTCTATTGGAGTAGAGAGAAGTCGAACCATAGTTTCCAAAGTGGCTTACCAAGCTTTTTGGATATGATTTTGAAATTCTTTATCAACCGTGATTACAGAATAAAGTAGCTAATGCTCTTTCTAGAATGGAACCATCTCCGGAACTTAATACCTTGTTCACTCTTGGTATTGTGGATTTAGAAGTGGTGCTGAAAGAAGTAGAGGAAGACAGTGAACTCCAAAGACTTGTTGAAGATTTGAAGAAAAATCCAGGGGAAGGGAACAAGTACCTATGGGAGAATGGAAGGCTCTTATATAAAAGAAGACTAGTGCTCTCCAAGAACTCAATGCTCATCACCAACCTATGACTCACCTTTCATGATTCGATCTTAGGTGGCTATTCAGAGTTTTTGGGAACCTACAAGAGAATGAATGGAGAGTTACATTGGAAGGGGATGAAGACGGATGCCAAGAAGTACATAGAGCAGTGTGATACTCGTCAGCGAAACAAGTACGAAGCTACCAAACCAGCTGGATTGTTACAGCCCATCCCAATCCTGATCGGATATTGGAAAATTGGTCTAGGTAGCCCACCTATGACAGGGGGAGTATGTCATTGTAGTGGTGATTGATAGACTGAGCAAATGTGCTTACTTTATCTCCATGAAACACCCCTTCTTAGCTAAACAAGTGGCTGATACATTCATTGATAAGATTGTGAGAAAGCATGACATCCCGAAGTCCATCATTACCGATAGAGATAAGATATTTCTTAGTAATTTTTGGAAGAAGTTGTTTGCAACCATGGGCACTATATTGAAAAGAAGCACCGTATTTCATCCTCAAATGGATGGACAAACAAAACGAGTAAACATATGCCTAGAGACCTATTTGAGGTGTTTATGTAATGAGCAACCAAATAAGTTCCTTCCCTAGGTAGAGCTGTGGTATAACACTACCTTCCATGCCTCCACTGAGACTACACCATTCCAAAAAGTATACAGGAGACCCCCACCACCTCTGTTATTATATGGAGAAAGAAAGACTCCTAACAACGAGGTAGAATCATTGCTGAAAGAAAGGGGTTTAGCTTTAAATGCATTAAAAGAAAACCTATGTGGCCTAGAACCGAATGAAGAAAATGGCAGATCTTAAGCGAAGGGAACTCAAGTTCAAGGTGGGAGATGAAGTGTATTTGAAGTTGAGAGGATAGGCAATGTTCGTTGGCCAGGAAAAGGTGTGAGAAACTTGCCCCTAAATTTGATGGACCCTACAAAATAATAGAAGAAATTGGAGAAGTGGCTTACAGATTACAATTGCCACTGGAGGTTGTCTTACATAATGTATTTCACGTTTCCCAACTGAAGCTAAAACTGGGAAAGCAACAAGAGGTACAGCACCAACATTCCGTTCTGACTGAAGAATTTGAATTGCAGTTGTGGCTTGAGACAATTTTGGGAAATGGTTGATCAAATGGAAAGGGTTACCGGAAAGTGAAGCTACATGGGAATCAGTGTATCAAATGAATCGGCAATTCTCTATTTTCCACCTTGAGGACAAGGTGAACTTAGAACCGAAGGGTGTTGTAAGGCCTCCTGTTATCCACACTTATAAAAGAAAGGGCAGGAAGGTAATTGTACAGTAATCCAATGGTGAGGGAATGTTGCAGAAAAAGAACGTGTTTACGTGTTTTGTGGGGCCCACAGGGAGGAAAGAGAGGGAGAGCTATAAGTATATCTTTAGGGGATTGCGTAGCTAGGTTATCTTTTTGTGAAAAGGTTGCTGTTAGCATTTTGAGAGGATTTTTCCCAGCCCCCATGTGTAGGTGCTGGGTACGTTTACTGTTTTCTTGAATTTCCATCTTTGAACTACTTGTTATTTCATATTTTGGCTGAAGGTAATATAAATAACAAGAGTACGGTCTCTGTTTTAGCCCGTTTTGGTTAGGATTTATTGTGTTTATATTGTTAGAATCCTAACATATTGCTAAGATTTGCTTATGATGTTAAAATTTGTGTCGTGACATTGTGAAGGTCATTCATTCAGCCAAAGCAAACGCAACCCACAACCACGGAATGGATTCAGATCGACTCCTTGTTGGTAAATGAAGCAAGTAAAGATAACCCATCCTTCATATTACAAGGGTTTGTGTATTTGACTTCTTGTTATCTTGTACAGCTGAAGCATTTGTGGGTAAGGGATTGTTTCGGAAAAGATTATCATATCATGCTAAAGGAAGATGTGGAGTCGAAGTTAAACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAAAGATAGCAAAGCTTAAAGTAAGTAACTTCCGCAAGCTTACCAAGCGTGAACACCAACTTGTACCTCATAAGCTTATTGAGACCACACCTATCTGGAACCGGAAGGGCAAAGCCAAAGCGAACACAGAATGTTGAAAGGCTTCGTAGTATGATAATAACTGCTTCCAGTTGAGTTTCCTAATCTCTTTCTGCTAATGGTTTAATGTCATGTCCTTTTGTTCTAGACAAGTTAGTTAAGCAGGAAAAGGGATTTTGATGTGGTAAAATGTCCTCCATTAAGAATAAAATGTTCTTTAATGACAATTTTTATTCATTTTACCCAGCTTATTTTTAGTGACTCCCTTGATCTCTTTTCTTCGCCCATTTCAATTATGAGATCTTCCAAGAAAGATTTGTACGTCATATCTAAGGAGCAAGTTGTATAACCTTCATCATTGTCTTTGATATGGCTAGTTTAGAAGATTCTGC

mRNA sequence

ATGGTTGGTTGGCAGAGATGTTTACGGTCCATGCTTGGCCATTTGCAAAACAAAGTGGAATTGAGTTACAATGCAGCTTCCAACTCTAGTTATCGTTTGCAATCTTCTCTTTCAAATGGGGAATTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAAATGGGAATTTCCAGTTCAAGGATGCTATTGGCAGATAAACCTGAGGAAGCAGTCTCATCTCCTCTGACATCTGCTTTGGCTTTAAGCAGCGGAAAAGATGGAGATAAAACAGACCAAAAAGTAATCTGTAAACGTTCCCAAGTCCAAGCTGTATTAAAGGGAATCAAACAGAGTCCCAAAAAGGTCAACTTAGTTGCTGCTCTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTTTATCAGGTCATTCATTCAGCCAAAGCAAACGCAACCCACAACCACGGAATGGATTCAGATCGACTCCTTGTTGCTGAAGCATTTGTGGGTAAGGGATTGTTTCGGAAAAGATTATCATATCATGCTAAAGGAAGATGTGGAGTCGAAGTTAAACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAAAGATAGCAAAGCTTAAAGTAAGTAACTTCCGCAAGCTTACCAAGCGTGAACACCAACTTGTACCTCATAAGCTTATTGAGACCACACCTATCTGGAACCGGAAGGGCAAAGCCAAAGCGAACACAGAATGTTGA

Coding sequence (CDS)

ATGGTTGGTTGGCAGAGATGTTTACGGTCCATGCTTGGCCATTTGCAAAACAAAGTGGAATTGAGTTACAATGCAGCTTCCAACTCTAGTTATCGTTTGCAATCTTCTCTTTCAAATGGGGAATTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAGCGGGCATTGCACAACCTGATTTTCGGTGTCTCCAACAAATGGGAATTTCCAGTTCAAGGATGCTATTGGCAGATAAACCTGAGGAAGCAGTCTCATCTCCTCTGACATCTGCTTTGGCTTTAAGCAGCGGAAAAGATGGAGATAAAACAGACCAAAAAGTAATCTGTAAACGTTCCCAAGTCCAAGCTGTATTAAAGGGAATCAAACAGAGTCCCAAAAAGGTCAACTTAGTTGCTGCTCTAGTTCGAGGCATGCGCGTTGAAGATGCACTGATGCAGTTACAATTAACTGTGAAGCGAGCTTCAAAAACTGTTTATCAGGTCATTCATTCAGCCAAAGCAAACGCAACCCACAACCACGGAATGGATTCAGATCGACTCCTTGTTGCTGAAGCATTTGTGGGTAAGGGATTGTTTCGGAAAAGATTATCATATCATGCTAAAGGAAGATGTGGAGTCGAAGTTAAACCAGAATGCCGACTAACAGTTGTTCTTAGGGAGACAACACCTGAAGAAGAGGCAAAGATAGCAAAGCTTAAAGTAAGTAACTTCCGCAAGCTTACCAAGCGTGAACACCAACTTGTACCTCATAAGCTTATTGAGACCACACCTATCTGGAACCGGAAGGGCAAAGCCAAAGCGAACACAGAATGTTGA

Homology

[Close]

BLAST of CSPI01G14420 vs. Swiss-Prot
Match: RL22_MARMM (50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) GN=rplV PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-20
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 112 SQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++ +A L+ I+ SP+K+NLVAAL+RG +VE AL  L+ + KR SK V + + SA ANA +
Sbjct: 13  NEARAKLRMIRTSPQKLNLVAALIRGKKVERALADLEFSRKRISKEVKKTLESAIANAEN 72

Query: 172 NHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRE 221
           NHG+D D L+V+EAFVGK L  KR    A+GR    +KP   LT+V+RE
Sbjct: 73  NHGLDIDSLVVSEAFVGKNLVMKRFRARARGRGAKILKPFSELTIVVRE 121

[Close]

BLAST of CSPI01G14420 vs. Swiss-Prot
Match: RL22_RHIME (50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-20
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 110 KRSQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ QAV + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANA 70

Query: 170 THNHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEA 228
            +NH +D D L+VAEAFVGK +  KR     +GR     KP   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

[Close]

BLAST of CSPI01G14420 vs. Swiss-Prot
Match: RL22_SINMW (50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.8e-20
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 110 KRSQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ QAV + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVRKTLESAIANA 70

Query: 170 THNHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEA 228
            +NH +D D L+VAEAFVGK +  KR     +GR     KP   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

[Close]

BLAST of CSPI01G14420 vs. Swiss-Prot
Match: RL22_METSB (50S ribosomal protein L22 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplV PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-19
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 110 KRSQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ +AV + ++ SP+K+NL+A L+RG +VE AL +L+ + KRA+  V + + SA ANA
Sbjct: 11  KDNEAKAVARMLRISPQKLNLLAQLIRGKKVERALAELEFSRKRAAFDVRKTLESAIANA 70

Query: 170 THNHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEA 228
            +NH ++ D L+VAEAFVGK L  KR S  A+GR G   KP   LT+VLRE     +A
Sbjct: 71  ENNHSLEVDDLVVAEAFVGKALVMKRFSPRARGRSGKIQKPFSHLTIVLREVAVAAQA 128

[Close]

BLAST of CSPI01G14420 vs. Swiss-Prot
Match: RL22_RHILO (50S ribosomal protein L22 OS=Rhizobium loti (strain MAFF303099) GN=rplV PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-19
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1


Query: 112 SQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++ +AVL+ I+ SP+K+NLVAAL+RG +V  AL  L+ + KR S TV + + SA ANA +
Sbjct: 13  NEARAVLRTIRISPQKLNLVAALIRGKKVATALSDLEFSAKRISGTVKKTLESAIANAEN 72

Query: 172 NHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEA 228
           NH +D D L+VAEA+VGK +  KR     +GR     KP   LT+V+RE   + EA
Sbjct: 73  NHDLDVDALVVAEAYVGKSIVMKRFHARGRGRASRIEKPFSHLTIVVREVEEKGEA 128

[Close]

BLAST of CSPI01G14420 vs. TrEMBL
Match: A0A0A0LVB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153000 PE=3 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 1.7e-144
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAGIAQPD 60
           MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSA IAQPD
Sbjct: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAVIAQPD 60

Query: 61  FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG 120
           FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG
Sbjct: 61  FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL 180

Query: 181 LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL 240
           LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL
Sbjct: 181 LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL 240

Query: 241 TKREHQLVPHKLIETTPIWNRKGKAKANTEC 272
           TKREHQLVPHKLIETTPIWNRKGKAKANTEC
Sbjct: 241 TKREHQLVPHKLIETTPIWNRKGKAKANTEC 271

[Close]

BLAST of CSPI01G14420 vs. TrEMBL
Match: D7U8M4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00620 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.3e-93
Identity = 189/263 (71.86%), Postives = 219/263 (83.27%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN-SSYRLQSSLSNGELPYLQRLLKPSSAGIAQP 60
           MVGWQR LR++   +  +VE +YN ++N S  RL+SS   GELPYLQRL K  SA I +P
Sbjct: 1   MVGWQRHLRNVFTQIGKRVEHNYNVSANFSCSRLESSPLVGELPYLQRLWKLPSATIPRP 60

Query: 61  DFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLK 120
            +   QQ+GISSSR LLAD     V+SPLT ALAL+ GK     DQKV+ K S+VQAVLK
Sbjct: 61  YYYYFQQLGISSSRQLLADSDVTPVASPLTPALALNGGKT---EDQKVVSKPSKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDR 180
           GIKQSPKKVNLVA LVRGMRVEDAL+QLQLTVKRASKTVYQVIHSA+ANATHNHG+D DR
Sbjct: 121 GIKQSPKKVNLVAELVRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDR 180

Query: 181 LLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRK 240
           LLVAEAFVGKG F+KR+SYHAKG+CG++V+PECRLTVV+RE TPEEEAK+AKL+VSNFRK
Sbjct: 181 LLVAEAFVGKGFFKKRVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRK 240

Query: 241 LTKREHQLVPHKLIETTPIWNRK 263
           L+KRE +LVPH+LIETT IWNRK
Sbjct: 241 LSKREKRLVPHQLIETTSIWNRK 260

[Close]

BLAST of CSPI01G14420 vs. TrEMBL
Match: A0A067KUY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08729 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-90
Identity = 186/268 (69.40%), Postives = 219/268 (81.72%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAAS--NSSYRLQSSLSNGELPYLQRLLKPSSAGIAQ 60
           MVGW R L+S+L  +  ++E +Y A++  +SS  ++S+   G+LPYLQRL K  SA I++
Sbjct: 1   MVGWHRHLQSLLRQVGKRLEHNYIASAKFSSSSCVESAFLQGKLPYLQRLWKSPSANISR 60

Query: 61  PDFRCLQQMGISSSRMLLADKPEEA-VSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           P ++ LQQ GISSSR LLA   EE  V SPLT AL   S   G   +Q+ + K S VQAV
Sbjct: 61  PFYQYLQQSGISSSRKLLAGSSEETPVHSPLTPALTPLSS--GTTKEQRAVTKPSTVQAV 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LKGIKQSPKK+NLVAALVRGMRVEDAL+QLQLT+KRASKTVYQVIHSA+ANATHNHG+D 
Sbjct: 121 LKGIKQSPKKLNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAFVGKG F+KR SYHAKGR G++V+PECRLTVV+RETTPEEEAKIA+L+V NF
Sbjct: 181 DRLLVAEAFVGKGFFKKRTSYHAKGRAGIKVRPECRLTVVVRETTPEEEAKIARLRVHNF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKA 266
           RKL+KRE QLVPHKLIETTPIWNRKGKA
Sbjct: 241 RKLSKRERQLVPHKLIETTPIWNRKGKA 266

[Close]

BLAST of CSPI01G14420 vs. TrEMBL
Match: A0A061F1Y1_THECC (Ribosomal protein L22p/L17e family protein OS=Theobroma cacao GN=TCM_023088 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-90
Identity = 181/270 (67.04%), Postives = 221/270 (81.85%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN--SSYRLQSSLSNGELPYLQRLLKPSSAGIAQ 60
           MVGWQR L+ +L  +  ++E +Y  ++N  SS RL SS   GELP +QRL +  SA I+ 
Sbjct: 1   MVGWQRHLQCVLRQVGRRLEHNYTLSANHSSSSRLSSSFLTGELPSIQRLWRSPSASIST 60

Query: 61  PDFRCLQQMGISSSRMLLADKPEEA-VSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           P ++  QQ+GIS+SR LLA   EE  +SSPLT  LA++SGK  +K   KV+  RS+VQAV
Sbjct: 61  PFYQYFQQLGISTSRKLLAGSSEETPISSPLTPVLAINSGKTEEK---KVVPNRSKVQAV 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LK IKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRA+KTVYQVIHSA+ANATHNHG+D 
Sbjct: 121 LKNIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAF+GKG ++KR+SYHAKG+CG++ +PECRLTVV+RE TPEEEA+IA+L+VS F
Sbjct: 181 DRLLVAEAFIGKGFYKKRISYHAKGKCGIKERPECRLTVVVREMTPEEEAEIARLRVSKF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKAKA 268
           RKLTKRE +LVPHKLIETTPIWNRKGK  +
Sbjct: 241 RKLTKRERRLVPHKLIETTPIWNRKGKGSS 267

[Close]

BLAST of CSPI01G14420 vs. TrEMBL
Match: M5VRJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009843mg PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 9.3e-90
Identity = 185/269 (68.77%), Postives = 217/269 (80.67%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSN---GELPYLQRLLKPSSAGIA 60
           MVGWQR L+S +  +  +VE SYN ++N S    SS S+   G LPY Q L KPSS  I+
Sbjct: 1   MVGWQRHLQSAIRQIGKRVECSYNPSANFSSSSSSSSSSRLEGVLPYFQTLCKPSSPTIS 60

Query: 61  QPDFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           +P  +  Q +GISSSR LLA+  E    SPLT  L  ++GKD ++  QK + K  +VQA+
Sbjct: 61  RPFHQYFQHLGISSSRTLLAE--ETPSPSPLTPLLTSNTGKD-EEHKQKSLTKPDKVQAI 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LKGIKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D 
Sbjct: 121 LKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAFVGKG F+KRLSYHAKG+CGV+V+PECRLTVV+RE TP+EEA+IAKLKV NF
Sbjct: 181 DRLLVAEAFVGKGYFKKRLSYHAKGKCGVKVRPECRLTVVVREITPDEEAEIAKLKVKNF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKAK 267
            KLTKRE +LVPHKLIETTPIWNRKGKA+
Sbjct: 241 VKLTKRERRLVPHKLIETTPIWNRKGKAR 266

[Close]

BLAST of CSPI01G14420 vs. TAIR10
Match: AT4G28360.1 (AT4G28360.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 302.4 bits (773), Expect = 2.9e-82
Identity = 171/271 (63.10%), Postives = 216/271 (79.70%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN---SSYRLQSSLSNGELPYLQRLLKPSSAGIA 60
           MVGW+R L++++  +  +V+ S+ + +N   S+  L+S  S G   YLQ LL+PS +  +
Sbjct: 1   MVGWKRNLQTVIRQVGRRVKNSHISTANYSSSTRNLESPFSQG---YLQSLLRPSYS--S 60

Query: 61  QPDFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           +P +  LQQ+GIS+SR L A   EE VSSPL+S   L SGK+    +QK+I KR +VQAV
Sbjct: 61  RPLYHHLQQLGISTSRQLQAS--EEPVSSPLSSPALLGSGKE---EEQKIIPKRQKVQAV 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LK IKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRA++TVY+VIH+A+ANATHNHG+D 
Sbjct: 121 LKSIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAFVGKGLF K+++YHAKGR G+   P CRLTV++RETTPEEEA+IA+LKV NF
Sbjct: 181 DRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKAKAN 269
           +K +KRE QLVPHKLIET+PIWNR+G  KAN
Sbjct: 241 KKKSKRERQLVPHKLIETSPIWNRRG-TKAN 260

[Close]

BLAST of CSPI01G14420 vs. TAIR10
Match: AT1G52370.1 (AT1G52370.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-79
Identity = 166/265 (62.64%), Postives = 209/265 (78.87%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN--SSYRLQSSLSNGELPYLQRLLKPSSAGIAQ 60
           M GWQ+ L+ ++  +  +V+ S+ + +N  S+  L+S  S G   YLQ LL+ + +  ++
Sbjct: 1   MAGWQKNLQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQG---YLQSLLRSTYS--SR 60

Query: 61  PDFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVL 120
           P +  LQQ+GIS+SR L A   EE VSSPL+S   L SGK+    +QK+I KR +VQAVL
Sbjct: 61  PLYYHLQQLGISTSRQLQAG--EEPVSSPLSSPALLGSGKE---EEQKIIPKRQKVQAVL 120

Query: 121 KGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSD 180
           K IKQSPKKVNLVAALVRGMRVEDALMQLQ+TVKRAS+TVY+VIH+A+ANATHNHG+D D
Sbjct: 121 KSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPD 180

Query: 181 RLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFR 240
           RLLVAEAFVGKGLF K+++YHAKGR G+   P CRLTV++RETT EEEA+IA+LKV NF+
Sbjct: 181 RLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFK 240

Query: 241 KLTKREHQLVPHKLIETTPIWNRKG 264
           KL KR+ QLVPHKLIET+PIWNR+G
Sbjct: 241 KLNKRQRQLVPHKLIETSPIWNRRG 255

[Close]

BLAST of CSPI01G14420 vs. TAIR10
Match: ATCG00810.1 (ATCG00810.1 ribosomal protein L22)

HSP 1 Score: 61.6 bits (148), Expect = 8.5e-10
Identity = 36/109 (33.03%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 112 SQVQAVLKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++V A+ + I  S  K   V   +RG   E+ALM L+L   R    ++++++SA ANA+H
Sbjct: 11  TEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASH 70

Query: 172 NHGMDSDRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRE 221
           N G     L++++A V +G   K+L   A+GR     +  C +T+VL +
Sbjct: 71  NKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLED 119

[Close]

BLAST of CSPI01G14420 vs. NCBI nr
Match: gi|700209808|gb|KGN64904.1| (hypothetical protein Csa_1G153000 [Cucumis sativus])

HSP 1 Score: 520.0 bits (1338), Expect = 2.5e-144
Identity = 270/271 (99.63%), Postives = 270/271 (99.63%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAGIAQPD 60
           MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSA IAQPD
Sbjct: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSSYRLQSSLSNGELPYLQRLLKPSSAVIAQPD 60

Query: 61  FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG 120
           FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG
Sbjct: 61  FRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDRL 180

Query: 181 LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL 240
           LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL
Sbjct: 181 LVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRKL 240

Query: 241 TKREHQLVPHKLIETTPIWNRKGKAKANTEC 272
           TKREHQLVPHKLIETTPIWNRKGKAKANTEC
Sbjct: 241 TKREHQLVPHKLIETTPIWNRKGKAKANTEC 271

[Close]

BLAST of CSPI01G14420 vs. NCBI nr
Match: gi|1009164334|ref|XP_015900442.1| (PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 371.7 bits (953), Expect = 1.1e-99
Identity = 196/272 (72.06%), Postives = 233/272 (85.66%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNS-SYRLQSSLSNGELPYLQRLLKPSSAGIAQP 60
           MVGWQR ++S+  H+  +VE +YN ++N  S  L+S L+  ELPYLQRLLKP SA I++P
Sbjct: 1   MVGWQRHIQSLFRHVGKRVEYNYNQSANLYSSHLESFLTPAELPYLQRLLKPPSATISRP 60

Query: 61  DFRCLQQMGISSSRMLLADKPEEA-VSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVL 120
            ++  QQ+G+SSSR LLAD  EE  V SPLT  LAL+SGKD D+  QK + K S+VQAVL
Sbjct: 61  FYQYFQQLGVSSSRKLLADASEETPVRSPLTPVLALNSGKDEDQ-KQKALSKPSKVQAVL 120

Query: 121 KGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSD 180
           KGIKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRASKTVYQVIHSA+ANATHNHG+D D
Sbjct: 121 KGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPD 180

Query: 181 RLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFR 240
           RLLVAEAFVGKG F+KR+SYHAKG+CG++V+PECRLTVV+RETTPEEEA+IA+L+V NFR
Sbjct: 181 RLLVAEAFVGKGFFKKRVSYHAKGKCGIKVRPECRLTVVVRETTPEEEAEIARLRVHNFR 240

Query: 241 KLTKREHQLVPHKLIETTPIWNRKGKAKANTE 271
           KLTKRE +LVPHKLIETTP+WNRKGK KA+ E
Sbjct: 241 KLTKRERRLVPHKLIETTPVWNRKGKGKASHE 271

[Close]

BLAST of CSPI01G14420 vs. NCBI nr
Match: gi|225439305|ref|XP_002267832.1| (PREDICTED: 39S ribosomal protein L22, mitochondrial [Vitis vinifera])

HSP 1 Score: 349.0 bits (894), Expect = 7.6e-93
Identity = 189/263 (71.86%), Postives = 219/263 (83.27%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN-SSYRLQSSLSNGELPYLQRLLKPSSAGIAQP 60
           MVGWQR LR++   +  +VE +YN ++N S  RL+SS   GELPYLQRL K  SA I +P
Sbjct: 1   MVGWQRHLRNVFTQIGKRVEHNYNVSANFSCSRLESSPLVGELPYLQRLWKLPSATIPRP 60

Query: 61  DFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLK 120
            +   QQ+GISSSR LLAD     V+SPLT ALAL+ GK     DQKV+ K S+VQAVLK
Sbjct: 61  YYYYFQQLGISSSRQLLADSDVTPVASPLTPALALNGGKT---EDQKVVSKPSKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDR 180
           GIKQSPKKVNLVA LVRGMRVEDAL+QLQLTVKRASKTVYQVIHSA+ANATHNHG+D DR
Sbjct: 121 GIKQSPKKVNLVAELVRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDR 180

Query: 181 LLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRK 240
           LLVAEAFVGKG F+KR+SYHAKG+CG++V+PECRLTVV+RE TPEEEAK+AKL+VSNFRK
Sbjct: 181 LLVAEAFVGKGFFKKRVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRK 240

Query: 241 LTKREHQLVPHKLIETTPIWNRK 263
           L+KRE +LVPH+LIETT IWNRK
Sbjct: 241 LSKREKRLVPHQLIETTSIWNRK 260

[Close]

BLAST of CSPI01G14420 vs. NCBI nr
Match: gi|643727792|gb|KDP36085.1| (hypothetical protein JCGZ_08729 [Jatropha curcas])

HSP 1 Score: 340.1 bits (871), Expect = 3.5e-90
Identity = 186/268 (69.40%), Postives = 219/268 (81.72%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAAS--NSSYRLQSSLSNGELPYLQRLLKPSSAGIAQ 60
           MVGW R L+S+L  +  ++E +Y A++  +SS  ++S+   G+LPYLQRL K  SA I++
Sbjct: 1   MVGWHRHLQSLLRQVGKRLEHNYIASAKFSSSSCVESAFLQGKLPYLQRLWKSPSANISR 60

Query: 61  PDFRCLQQMGISSSRMLLADKPEEA-VSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           P ++ LQQ GISSSR LLA   EE  V SPLT AL   S   G   +Q+ + K S VQAV
Sbjct: 61  PFYQYLQQSGISSSRKLLAGSSEETPVHSPLTPALTPLSS--GTTKEQRAVTKPSTVQAV 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LKGIKQSPKK+NLVAALVRGMRVEDAL+QLQLT+KRASKTVYQVIHSA+ANATHNHG+D 
Sbjct: 121 LKGIKQSPKKLNLVAALVRGMRVEDALLQLQLTIKRASKTVYQVIHSARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAFVGKG F+KR SYHAKGR G++V+PECRLTVV+RETTPEEEAKIA+L+V NF
Sbjct: 181 DRLLVAEAFVGKGFFKKRTSYHAKGRAGIKVRPECRLTVVVRETTPEEEAKIARLRVHNF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKA 266
           RKL+KRE QLVPHKLIETTPIWNRKGKA
Sbjct: 241 RKLSKRERQLVPHKLIETTPIWNRKGKA 266

[Close]

BLAST of CSPI01G14420 vs. NCBI nr
Match: gi|590633119|ref|XP_007028027.1| (Ribosomal protein L22p/L17e family protein [Theobroma cacao])

HSP 1 Score: 340.1 bits (871), Expect = 3.5e-90
Identity = 181/270 (67.04%), Postives = 221/270 (81.85%), Query Frame = 1


Query: 1   MVGWQRCLRSMLGHLQNKVELSYNAASN--SSYRLQSSLSNGELPYLQRLLKPSSAGIAQ 60
           MVGWQR L+ +L  +  ++E +Y  ++N  SS RL SS   GELP +QRL +  SA I+ 
Sbjct: 1   MVGWQRHLQCVLRQVGRRLEHNYTLSANHSSSSRLSSSFLTGELPSIQRLWRSPSASIST 60

Query: 61  PDFRCLQQMGISSSRMLLADKPEEA-VSSPLTSALALSSGKDGDKTDQKVICKRSQVQAV 120
           P ++  QQ+GIS+SR LLA   EE  +SSPLT  LA++SGK  +K   KV+  RS+VQAV
Sbjct: 61  PFYQYFQQLGISTSRKLLAGSSEETPISSPLTPVLAINSGKTEEK---KVVPNRSKVQAV 120

Query: 121 LKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDS 180
           LK IKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRA+KTVYQVIHSA+ANATHNHG+D 
Sbjct: 121 LKNIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDP 180

Query: 181 DRLLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNF 240
           DRLLVAEAF+GKG ++KR+SYHAKG+CG++ +PECRLTVV+RE TPEEEA+IA+L+VS F
Sbjct: 181 DRLLVAEAFIGKGFYKKRISYHAKGKCGIKERPECRLTVVVREMTPEEEAEIARLRVSKF 240

Query: 241 RKLTKREHQLVPHKLIETTPIWNRKGKAKA 268
           RKLTKRE +LVPHKLIETTPIWNRKGK  +
Sbjct: 241 RKLTKRERRLVPHKLIETTPIWNRKGKGSS 267

The following BLAST results are available for this feature:

BLAST of CSPI01G14420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL22_MARMM	2.9e-20	50.46	50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) GN=rplV PE=3 SV=1	[more]
RL22_RHIME	3.8e-20	46.61	50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1	[more]
RL22_SINMW	3.8e-20	46.61	50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 ...	[more]
RL22_METSB	2.5e-19	46.61	50S ribosomal protein L22 OS=Methylocella silvestris (strain BL2 / DSM 15510 / N...	[more]
RL22_RHILO	2.5e-19	46.55	50S ribosomal protein L22 OS=Rhizobium loti (strain MAFF303099) GN=rplV PE=3 SV=...	[more]

BLAST of CSPI01G14420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVB7_CUCSA	1.7e-144	99.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G153000 PE=3 SV=1	[more]
D7U8M4_VITVI	5.3e-93	71.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00620 PE=3 SV=...	[more]
A0A067KUY1_JATCU	2.5e-90	69.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08729 PE=3 SV=1	[more]
A0A061F1Y1_THECC	2.5e-90	67.04	Ribosomal protein L22p/L17e family protein OS=Theobroma cacao GN=TCM_023088 PE=3...	[more]
M5VRJ8_PRUPE	9.3e-90	68.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009843mg PE=3 SV=1	[more]

BLAST of CSPI01G14420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28360.1	2.9e-82	63.10	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.1	1.3e-79	62.64	Ribosomal protein L22p/L17e family protein	[more]
ATCG00810.1	8.5e-10	33.03	ATCG00810.1 ribosomal protein L22	[more]

BLAST of CSPI01G14420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209808\|gb\|KGN64904.1\|	2.5e-144	99.63	hypothetical protein Csa_1G153000 [Cucumis sativus]	[more]
gi\|1009164334\|ref\|XP_015900442.1\|	1.1e-99	72.06	PREDICTED: 39S ribosomal protein L22, mitochondrial-like [Ziziphus jujuba]	[more]
gi\|225439305\|ref\|XP_002267832.1\|	7.6e-93	71.86	PREDICTED: 39S ribosomal protein L22, mitochondrial [Vitis vinifera]	[more]
gi\|643727792\|gb\|KDP36085.1\|	3.5e-90	69.40	hypothetical protein JCGZ_08729 [Jatropha curcas]	[more]
gi\|590633119\|ref\|XP_007028027.1\|	3.5e-90	67.04	Ribosomal protein L22p/L17e family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001063	Ribosomal_L22
IPR005727	Ribosomal_L22_bac/chlpt-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14420.1	CSPI01G14420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	GENE3D	G3DSA:3.90.470.10		coord: 113..222 score: 3.6
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 120..219 score: 7.0
IPR001063	Ribosomal protein L22/L17	unknown	SSF54843	Ribosomal protein L22	coord: 110..221 score: 2.75
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	HAMAP	MF_01331_B	Ribosomal_L22_B	coord: 112..221 score: 20
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	PANTHER	PTHR13501	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	coord: 27..262 score: 1.0
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	TIGRFAMs	TIGR01044	TIGR01044	coord: 116..217 score: 2.4
None	No IPR available	PANTHER	PTHR13501:SF2	39S RIBOSOMAL PROTEIN L22, MITOCHONDRIAL	coord: 27..262 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G14420	Cla003541	Watermelon (97103) v1	cpiwmB046
CSPI01G14420	Csa1G153000	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G14420	MELO3C004760	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G14420	ClCG01G012560	Watermelon (Charleston Gray)	cpiwcgB027
CSPI01G14420	Lsi03G001010	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G14420	MELO3C004760.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G14420	CsaV3_1G014590	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G14420	Cla97C01G011760	Watermelon (97103) v2	cpiwmbB009
CSPI01G14420	Bhi08G000070	Wax gourd	cpiwgoB049
CSPI01G14420	Cucsa.199960	Cucumber (Gy14) v1	cgycpiB318
CSPI01G14420	CsGy1G014350	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G14420	Watermelon (97103) v2	cpiwmbB026
CSPI01G14420	Cucurbita maxima (Rimu)	cmacpiB163
CSPI01G14420	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G14420	Cucurbita moschata (Rifu)	cmocpiB148
CSPI01G14420	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G14420	Cucurbita moschata (Rifu)	cmocpiB810
CSPI01G14420	Melon (DHL92) v3.5.1	cpimeB067
CSPI01G14420	Watermelon (Charleston Gray)	cpiwcgB031
CSPI01G14420	Watermelon (97103) v1	cpiwmB070
CSPI01G14420	Cucurbita pepo (Zucchini)	cpecpiB513
CSPI01G14420	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G14420	Bottle gourd (USVL1VR-Ls)	cpilsiB006
CSPI01G14420	Bottle gourd (USVL1VR-Ls)	cpilsiB020
CSPI01G14420	Melon (DHL92) v3.6.1	cpimedB077