Cla001764 (gene) Watermelon (97103) v1

Overview
NameCla001764
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionChlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein
LocationChr3 : 20966664 .. 20968388 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGGTTGTTTTTCTTTCCTTTTATCTCTTCTCTTGTGTGTGGATTATTATTATTATCAGTATTAAATGTATATTAATTACCTACCTTAATATGGTATTATAATCCAAGGTCTTGTGTTTCAACTTTAATTCATCTTCATAATCGTTTGTTGAGTATTTGCAAGTTTTCAAGTTCTGCCAGTGAAGGAGAGTGTTAATTACTAAGTGTATATGTAAAAGAAGGTTAAATTTACCCTAGGTTATGTTTGGTAACAATATTATTTTTATTTTTCTATGTTTGAAATTTATGTTTGTTATTTCCTAAATTTTATATTATGGTTCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACATCTGAGTTGTAAGTCAAATCCTCGTGACAAAGGTTACTTTTTGAAAATTTTTTATTTTATTTTTATTTTTAAAATTTTTGCTTAGTTTTTAAAAATATTTGTAGAAAGTTGATAACAAAAAGAAACTTCTATCTACGGGTAAAAGTAGTGTTATAAATTTTATAAAAAAATAAAAAATAAAATAGTTACCAAATGAGATCTTAGACTAATTAAATTTATTATTCTAATTTTCAATAGTTTGAGTATAGCTGATTGAATTAGAAGGAAGCCATGACCTTCTTCTAAAGTAAAATATTATTTGTTGGAGTTAGTGTTTAGTTGTGAGATTTAATATTATGTTATTAATATTGCAGCAAGGAGCAGATAGACAACTGTGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGGTATTAAGAAAAACTCATCGATATGTTGTTTCTTATTTTTCATATTTTAAAAAACAAAAATCTTATCAAACATAGATTTAAAATAAACAAGCTTCTAAAAAGGGTAAAACCTTCATACTATTTGAAACTAGAGTTGTTGTGTAGTAATTTGAATTGCTTTGTTTTGGTTTGATTTGATTGATAGTCTCCCGGGTGATTACGGATTTGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG

mRNA sequence

ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTGTGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCGGGTGATTACGGATTTGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG

Coding sequence (CDS)

ATGGCTACTCAGGCACTTGTCTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCTTCCAGAAAATCAGCTTCTTTTGTTGTTAGAGCTCAAGCCACTCCTCCTGTTAAGCAAGGAGCAGATAGACAACTGTGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCGGGTGATTACGGATTTGACCCATTGGGGCTATCAGACCCCGAAGGAACAGGAGGGTTTATCGAGCCAAGATGGTTGGCATACGGTGAGGTGATCAACGGGAGGTTCGCGATGTTGGGAGCAGCCGGAGCCATTGCCCCAGAGATCTTTGGATCCCTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACAGGGGTCATCCCACCAGCAGGAACCTACAACTATTGGGCAGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG

Protein sequence

MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Homology
[Close]
BLAST of Cla001764 vs. Swiss-Prot
Match: LHCA3_ARATH (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 8.6e-137
Identity = 237/273 (86.81%), Postives = 248/273 (90.84%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MA QALVSSSLTSSV  ARQ  G+KP   +S+K +SFVV+A ATPPVKQGA+R LWFAS 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGE+INGRFAMLGAAGAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW  PGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 6.2e-135
Identity = 236/274 (86.13%), Postives = 253/274 (92.34%), Query Frame = 1 

Query: 1   MATQALV-SSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFAS 60
           MATQAL+ SSS+++S  AARQ +G++ S   +RK ASFVVRA +TPPVKQGA+RQLWFAS
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSRISQSVTRK-ASFVVRAASTPPVKQGANRQLWFAS 60

Query: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGS 180
            G  GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDW+KPGS
Sbjct: 121 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240
           MGKQYFLGLEK LGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           F+Q LVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 6.0e-130
Identity = 235/278 (84.53%), Postives = 244/278 (87.77%), Query Frame = 1 

Query: 1   MATQALVSSS-LTSSVGAARQRLGAKP---SFGSSRKSASFVVRAQATPPVKQGA-DRQL 60
           MATQALVSSS LT +  A RQ   A+    S G SRK    +VRA ATPPVKQG  DR L
Sbjct: 1   MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG---LVRAAATPPVKQGGVDRPL 60

Query: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAI 120
           WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGA GAI
Sbjct: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAI 120

Query: 121 APEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWS 180
           APE  G +GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDW+
Sbjct: 121 APEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWA 180

Query: 181 KPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 240
           KPGSMGKQYFLGLEK  GGSG+PAYPGGP FNPLGFGKDEKSLK+LKLKEVKNGRLAMLA
Sbjct: 181 KPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 240

Query: 241 ILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           ILGYF+QGLVTGVGPYQNLLDH++DPVNNNVLTSLKFH
Sbjct: 241 ILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

[Close]
BLAST of Cla001764 vs. Swiss-Prot
Match: LHCA5_ARATH (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.9e-44
Identity = 107/262 (40.84%), Postives = 147/262 (56.11%), Query Frame = 1 

Query: 21  RLGAKPSFGSSRKSASFVVRAQATPPVKQGA--------DRQLWFASKQSLSYLDGSLPG 80
           R G    F   R+ AS V+  + +     G         +R  W        YLDG+L G
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAG 65

Query: 81  DYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETA 140
           DYGFDPLGL  DPE        +W    E+++ RFAMLG AG +  ++  + G+      
Sbjct: 66  DYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGVAGILFTDLLRTTGI----RN 125

Query: 141 LP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQ--YFLGL 200
           LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+  PGS  K+  +F GL
Sbjct: 126 LPVWYEAGAVK----FDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 185

Query: 201 EKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGV 260
           E  L G  +P YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+LG+FVQ  VT  
Sbjct: 186 EAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 245

Query: 261 GPYQNLLDHLSDPVNNNVLTSL 271
           GP  NL++HLS+P +  ++ +L
Sbjct: 246 GPIDNLVEHLSNPWHKTIIQTL 251

[Close]
BLAST of Cla001764 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.5e-43
Identity = 111/263 (42.21%), Postives = 148/263 (56.27%), Query Frame = 1 

Query: 2   ATQALVSSSLTSSVGAARQRLGAKPSFGS-SRKSASFVVRAQATPPVKQGADRQLWFASK 61
           A+ A+ + S  S +G  + RL  K +  + SR  AS  VRA A  P     DR +WF   
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS--VRAVAADP-----DRPIWFPGS 66

Query: 62  QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 121
               +LDGSLPGD+GFDPLGLS DP+        +W    E+++ R+AMLGAAG   PE 
Sbjct: 67  TPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAEIVHCRWAMLGAAGIFIPEF 126

Query: 122 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGS 181
              +G++   +   W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D  KPGS
Sbjct: 127 LTKIGILNTPS---WYT------AGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGS 186

Query: 182 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS-LKDLKLKEVKNGRLAMLAILG 241
           +         K  G   D  YPGG  F+PLG+G    + LK+L+ KE+KNGRLAMLA++G
Sbjct: 187 VNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMG 245

Query: 242 YFVQGLVTGVGPYQNLLDHLSDP 262
            + Q + TG GP  NL  HL+DP
Sbjct: 247 AWFQHIYTGTGPIDNLFAHLADP 245

[Close]
BLAST of Cla001764 vs. TrEMBL
Match: A0A0A0LXV0_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G630330 PE=3 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 4.6e-153
Identity = 264/273 (96.70%), Postives = 272/273 (99.63%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSLTSSVGAARQRLGA+PSFGSSRKSASFVVRA+ATPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF
Sbjct: 61  QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. TrEMBL
Match: B9SEZ7_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_1211480 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 3.5e-145
Identity = 251/273 (91.94%), Postives = 264/273 (96.70%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSLTSSV  ARQ LGA+ SFGSSRKS+SFVVRA +TPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVETARQILGARSSFGSSRKSSSFVVRASSTPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G  GLIPPETALPWF+TGVIPPAGTY+YWADPYTLFV EMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. TrEMBL
Match: F6I5I9_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_15s0024g00040 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 7.6e-140
Identity = 243/273 (89.01%), Postives = 254/273 (93.04%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MA QALVSSSLTSSV  ARQ LG++P    SRKS+SFVVRA +TPPVKQGADR LWFASK
Sbjct: 1   MAAQALVSSSLTSSVETARQILGSRPLQSPSRKSSSFVVRAASTPPVKQGADRPLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGR+AMLGA GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G LGLIPPETALPWFKTGV PPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW+ PGSM
Sbjct: 121 GKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEK+LGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
            QG VTGVGP QNLLDHL+DPVNNN++TSLKFH
Sbjct: 241 AQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 273

[Close]
BLAST of Cla001764 vs. TrEMBL
Match: A0A067L9S9_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_15032 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 9.9e-140
Identity = 245/273 (89.74%), Postives = 258/273 (94.51%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MA QALVSSSLTSSV  ARQ LG +P+  SSRKS SF+VRA +TPPVKQGA+RQLWFASK
Sbjct: 1   MAAQALVSSSLTSSVETARQILGGRPNH-SSRKS-SFIVRASSTPPVKQGANRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G  GLIP ETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GKAGLIPEETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLG EK+LGGSGDPAYPGGPLFNPLGFGKDEKS+KDLKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGFEKYLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHL+DPVNNN+LTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH 271

[Close]
BLAST of Cla001764 vs. TrEMBL
Match: W9SMB1_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_017723 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 1.7e-139
Identity = 244/274 (89.05%), Postives = 260/274 (94.89%), Query Frame = 1 

Query: 1   MATQALV-SSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFAS 60
           MATQALV SSSLTSSV AARQ  G++P+  S+R+SASFVVRA +TPP+KQGADR LWFAS
Sbjct: 1   MATQALVSSSSLTSSVEAARQIFGSRPT-QSTRRSASFVVRAASTPPIKQGADRPLWFAS 60

Query: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGR+AMLG  GAIAPEI
Sbjct: 61  KQSLAYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGVVGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGS 180
            GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW+ PGS
Sbjct: 121 LGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240
           MGKQYFLG EK+LGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG+
Sbjct: 181 MGKQYFLGFEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGF 240

Query: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           FVQGLVTGVGPYQNLLDHL+DP++NN+LTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLADPIHNNILTSLKFH 273

[Close]
BLAST of Cla001764 vs. NCBI nr
Match: gi|449442612|ref|XP_004139075.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 6.6e-153
Identity = 264/273 (96.70%), Postives = 272/273 (99.63%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSLTSSVGAARQRLGA+PSFGSSRKSASFVVRA+ATPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF
Sbjct: 61  QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. NCBI nr
Match: gi|659098797|ref|XP_008450298.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo])

HSP 1 Score: 547.0 bits (1408), Expect = 1.9e-152
Identity = 263/273 (96.34%), Postives = 272/273 (99.63%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRA ATPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEIF
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           +QGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]
BLAST of Cla001764 vs. NCBI nr
Match: gi|255567170|ref|XP_002524566.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ricinus communis])

HSP 1 Score: 522.3 bits (1344), Expect = 5.0e-145
Identity = 251/273 (91.94%), Postives = 264/273 (96.70%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSLTSSV  ARQ LGA+ SFGSSRKS+SFVVRA +TPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLTSSVETARQILGARSSFGSSRKSSSFVVRASSTPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G  GLIPPETALPWF+TGVIPPAGTY+YWADPYTLFV EMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]
BLAST of Cla001764 vs. NCBI nr
Match: gi|1009127673|ref|XP_015880818.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 511.9 bits (1317), Expect = 6.8e-142
Identity = 250/277 (90.25%), Postives = 263/277 (94.95%), Query Frame = 1 

Query: 1   MATQALVSSS-LTSSVGAARQRLGAKP---SFGSSRKSASFVVRAQATPPVKQGADRQLW 60
           MATQALVSSS LTSS+ +ARQ LG++P    FGSSRKSASFVVRA +TPPVKQGADR LW
Sbjct: 1   MATQALVSSSSLTSSIESARQILGSRPFQSPFGSSRKSASFVVRAASTPPVKQGADRPLW 60

Query: 61  FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIA 120
           FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGA GAIA
Sbjct: 61  FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 120

Query: 121 PEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSK 180
           PEI G LGLIP ETALPWFKTGVIPPAGTY+YWADPYTLFV EMALMGFAEHRRFQDW+K
Sbjct: 121 PEILGKLGLIPEETALPWFKTGVIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAK 180

Query: 181 PGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 240
           PGSMGKQYFLGLEK+LGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKE+KNGRLAMLAI
Sbjct: 181 PGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEIKNGRLAMLAI 240

Query: 241 LGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           LGYF+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 LGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 277

[Close]
BLAST of Cla001764 vs. NCBI nr
Match: gi|729366253|ref|XP_010547181.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 505.4 bits (1300), Expect = 6.4e-140
Identity = 245/273 (89.74%), Postives = 256/273 (93.77%), Query Frame = 1 

Query: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAQATPPVKQGADRQLWFASK 60
           MATQALVSSSL+SSV  ARQ LGA+P+     K  SFVVRA +TPPVKQGADRQLWFASK
Sbjct: 1   MATQALVSSSLSSSVETARQILGARPTSFLVPKKGSFVVRAASTPPVKQGADRQLWFASK 60

Query: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120
           QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPRWLAYGE+INGRFAMLGAAGAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWSKPGSM 180
           G  GLIP ETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW+KPGSM
Sbjct: 121 GKAGLIPQETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240
           GKQYFLGLEK LGGSGDPAYPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILGYF
Sbjct: 181 GKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYF 240

Query: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274
           VQGLVTGVGPYQNLLDHL+DPVNNN+LTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH 273

The following BLAST results are available for this feature:
BLAST of Cla001764 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LHCA3_ARATH8.6e-13786.81Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ... [more]
CB13_SOLLC6.2e-13586.13Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8... [more]
CB23_PEA6.0e-13084.53Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 ... [more]
LHCA5_ARATH2.9e-4440.84Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th... [more]
LHCA2_ARATH5.5e-4342.21Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th... [more]
BLAST of Cla001764 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXV0_CUCSA4.6e-15396.70Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G63033... [more]
B9SEZ7_RICCO3.5e-14591.94Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_12114... [more]
F6I5I9_VITVI7.6e-14089.01Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_15s0024g... [more]
A0A067L9S9_JATCU9.9e-14089.74Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_15032 ... [more]
W9SMB1_9ROSA1.7e-13989.05Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_017723... [more]
BLAST of Cla001764 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442612|ref|XP_004139075.1|6.6e-15396.70PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus][more]
gi|659098797|ref|XP_008450298.1|1.9e-15296.34PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo][more]
gi|255567170|ref|XP_002524566.1|5.0e-14591.94PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ricinus communis][more]
gi|1009127673|ref|XP_015880818.1|6.8e-14290.25PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ziziphus jujuba][more]
gi|729366253|ref|XP_010547181.1|6.4e-14089.74PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Tarenaya hasslerian... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009735 response to cytokinin
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0015743 malate transport
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009416 response to light stimulus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0010287 plastoglobule
cellular_component GO:0016020 membrane
molecular_function GO:0031409 pigment binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU64524watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001764Cla001764.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU64524WMU64524transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..273
score: 1.8E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 64..242
score: 2.2
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 54..268
score: 6.2
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 52..269
score: 1.09
NoneNo IPR availablePANTHERPTHR21649:SF14PSI TYPE III CHLOROPHYLL A/B-BINDING PROTEINcoord: 1..273
score: 1.8E