Carg22685 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22685
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_230 : 35926 .. 37734 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTCTAACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCCGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGGTAATTCCTTACCCCATTTGGTTCTTTCTTACCTAAACTCCCTCAATAAGATATCAATTACTTGTTCTTATTCGTCCCAGTTGGCTTAGTTGTGATCTAATGTTTGTTATCGTTGCAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACATATTTGGATGGAAGGTATATATCTTTATTAAAAAGTTGTTCCGAAAGAATCTTTAATTTATGTGTGAGTTAATAAGCTTGACTTAGTAAAACAAGTTCTTGACTTTGGAATAACTTTACGTTAATTGTTAGTCTTTCTAGAAAATTTAGGAAATTTGTTAACGTCTTCTCTGGCATAAATACTCATGAGATGTATGCTCCTTTTCACACCAACCGAGAGAATAAATGCTTAAGATTTCTTTGTTTTAGAAGATCTCTCCCCTCGTATTTTATTGTTTTATTTGTTTCGACATATTTGGATCGGGGTCATATCCAACATTATTGTCTCTTATTCTTAGAAACATGATAAACGAGTGTCTTAAATTGTAAAAGCTTCACCGGGTATGCAACTAAGTCATGTGATTTAAATTACTTGGTTTGATTGATAGTCTTTCGGGCGATTAAGGATTTGATCCATTGGGACTATCAGACCCTGTTCTTTTTGTTCTTTTATTTGTTTCGACATATTTCAATCATGGGTCATATCCAACATTCATGTCTCCTATTCTCAGAAACATGACAAACGAGTATCTTAAATTGTAAAAGCTTCACGAGTATCTTAAATTGTAAAAGCTTCACGGGATCTAAAACTAAGTCAGGTGATTTGAATGACTTGATTTGATTGATAGTCTTCCGGGCGATTAAGGATTTGATCCATTGGGACTATCAGACCTTGATTTTTTTGTTCTTTTATTTGTTTCGACATATTTGGATCATGGGTCATATCCAACATTCATGTCTCCTGTTCTCAGAAACATGACAAATGAGTGTCTTAAATGGTAAAAGCTTCCTAGGACATGAGACTAAGTCGTGTGATTTGAATTACTTGTTTTGATTGATAGTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTTGCGATGTTAGGAGCCGCAGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGAACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGTTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTCTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGAAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGTGTTGGCCCTTACCAAAACCTTTTGGACCATTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTTAAGTTCCACTAG

mRNA sequence

ATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTCTAACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCCGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACATATTTGGATGGAAGTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTTGCGATGTTAGGAGCCGCAGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGAACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGTTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTCTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGAAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGTGTTGGCCCTTACCAAAACCTTTTGGACCATTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTTAAGTTCCACTAG

Coding sequence (CDS)

ATGGCCACTCAGGCTCTTGTTTCATCCTCGTCTCTAACCTCTTCAGTGGGCGCTGCCAGACAGCGATTAGGACCAAAGCCCTCCCTTGGTTCCTCCAGAAAGGCCGCTTCTTTCGTTGTTAGAGCTGAAGCCACTCCTCCTGTTAAGCAAGGAGCTAACAGACAATTATGGTTCGCTTCTAAACAAAGTCTTACATATTTGGATGGAAGTCTTCCGGGCGATTACGGGTTCGATCCATTGGGACTATCAGACCCCGAGGGCACAGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGCGAGGTGATCAACGGGAGGTTTGCGATGTTAGGAGCCGCAGGAGCCATTGCCCCAGAGATCTTTGGATCACTAGGGTTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGAACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGTTTGAGATGGCTCTAATGGGTTTTGCTGAACACAGAAGATTTCAAGATTGGTACAACCCAGGATCCATGGGAAAGCAATACTTCTTAGGGTTAGAGAAGTTCTTGGGTGGGTCAGGTGACCCTGCTTACCCAGGTGGCCCCTTGTTCAACCCTTTAGGGTTTGGAAAAGATGAGAAATCAATGAAGGAATTGAAGCTGAAGGAGATCAAGAATGGGAGGCTTGCAATGTTGGCTATCTTGGGTTACTTCATACAAGGCCTTGTCACTGGTGTTGGCCCTTACCAAAACCTTTTGGACCATTTGTCTGACCCTGTCAACAACAACGTTTTGACAAGCCTTAAGTTCCACTAG

Protein sequence

MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH

Homology

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BLAST of Carg22685 vs. NCBI nr
Match: XP_022933380.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucurbita moschata])

HSP 1 Score: 558.9 bits (1439), Expect = 9.5e-156
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Carg22685 vs. NCBI nr
Match: XP_023006167.1 (chlorophyll a-b binding protein 8, chloroplastic [Cucurbita maxima] >XP_023531157.1 chlorophyll a-b binding protein 8, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 555.4 bits (1430), Expect = 1.0e-154
Identity = 272/274 (99.27%), Postives = 273/274 (99.64%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWYNPGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 274

[Close]

BLAST of Carg22685 vs. NCBI nr
Match: XP_004139075.1 (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >KGN66578.1 Type III chlorophyll a/b-binding protein [Cucumis sativus])

HSP 1 Score: 535.4 bits (1378), Expect = 1.1e-148
Identity = 264/274 (96.35%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSVGAARQRLG +PS GSSRK+ASFVVRAEATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. NCBI nr
Match: XP_008450298.1 (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo])

HSP 1 Score: 531.6 bits (1368), Expect = 1.6e-147
Identity = 262/274 (95.62%), Postives = 267/274 (97.45%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSVGAARQRLG KPS GSSRK+ASFVVRA ATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLTYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Carg22685 vs. NCBI nr
Match: XP_022153224.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Momordica charantia])

HSP 1 Score: 523.9 bits (1348), Expect = 3.4e-145
Identity = 254/274 (92.70%), Postives = 265/274 (96.72%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSVGAAR R G +PS GSSRK+ASFVVRAEATPPVKQGANRQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLG  GAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
            GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDW NPGS
Sbjct: 121 LGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSG+PAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILG+
Sbjct: 181 MGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGF 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           F+QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. TAIR10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3)

HSP 1 Score: 484.2 bits (1245), Expect = 5.4e-137
Identity = 238/274 (86.86%), Postives = 249/274 (90.88%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MA QALV SSSLTSSV  ARQ  G KP   +S+K +SFVV+A ATPPVKQGANR LWFAS
Sbjct: 1   MAAQALV-SSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
            QSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  SQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QDWYNPGS
Sbjct: 121 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. TAIR10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-45
Identity = 98/222 (44.14%), Postives = 136/222 (61.26%), Query Frame = 0


Query: 54  RQLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGA 113
           R  W        YLDG+L GDYGFDPLGL  DPE        +W    E+++ RFAMLG 
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGV 105

Query: 114 AGAIAPEIFGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRR 173
           AG +  ++  + G+      LP W++ G +     +++ A   TL V +  LMGFAE +R
Sbjct: 106 AGILFTDLLRTTGI----RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKR 165

Query: 174 FQDWYNPGSMGKQ--YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 233
           + D+ +PGS  K+  +F GLE  L G  +P YPGGPL NPLG  KD ++  + KLKEIKN
Sbjct: 166 YMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKN 225

Query: 234 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSL 272
           GRLAM+A+LG+F+Q  VT  GP  NL++HLS+P +  ++ +L
Sbjct: 226 GRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Carg22685 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 116/264 (43.94%), Postives = 145/264 (54.92%), Query Frame = 0


Query: 12  LTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTYLDGSL 71
           LT S G   + L    S+GSS K +SF V A      K+G     W     S  YL GSL
Sbjct: 23  LTGSSGRLNRDLS-FTSIGSSAKTSSFKVEA------KKGE----WLPGLASPDYLTGSL 82

Query: 72  PGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLI-PP 131
            GD GFDPLGL+ DPE        +W    E++NGR+AMLG AG + PE+F  +G+I  P
Sbjct: 83  AGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVP 142

Query: 132 ETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMG-----KQ 191
           E    W+       AG   Y+A   TLFV E  L  + E RR+QD  NPGS+      KQ
Sbjct: 143 E----WY------DAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 202

Query: 192 YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQG 251
           Y L         G+  YPGG +FNPL F   +    E K KE+ NGRLAMLA LG+ +Q 
Sbjct: 203 YSL-------PKGEVGYPGG-IFNPLNFAPTQ----EAKEKELANGRLAMLAFLGFVVQH 247

Query: 252 LVTGVGPYQNLLDHLSDPVNNNVL 269
            VTG GP++NLL HLSDP +N ++
Sbjct: 263 NVTGKGPFENLLQHLSDPWHNTIV 247

[Close]

BLAST of Carg22685 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-41
Identity = 108/265 (40.75%), Postives = 149/265 (56.23%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGS-SRKAASFVVRAEATPPVKQGANRQLWFA 60
           +   + +++ S  S +G  + RL  K ++ + SR  AS  VRA A  P     +R +WF 
Sbjct: 5   LCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS--VRAVAADP-----DRPIWFP 64

Query: 61  SKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAP 120
                 +LDGSLPGD+GFDPLGL SDP+        +W    E+++ R+AMLGAAG   P
Sbjct: 65  GSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAEIVHCRWAMLGAAGIFIP 124

Query: 121 EIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNP 180
           E    +G++   +   W+       AG   Y+ D  TLFV E+ L+G+AE RR+ D   P
Sbjct: 125 EFLTKIGILNTPS---WY------TAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKP 184

Query: 181 GSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS-MKELKLKEIKNGRLAMLAI 240
           GS+         K  G   D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA+
Sbjct: 185 GSVNTDPVFPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAV 244

Query: 241 LGYFIQGLVTGVGPYQNLLDHLSDP 263
           +G + Q + TG GP  NL  HL+DP
Sbjct: 245 MGAWFQHIYTGTGPIDNLFAHLADP 245

[Close]

BLAST of Carg22685 vs. TAIR10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-36
Identity = 107/286 (37.41%), Postives = 145/286 (50.70%), Query Frame = 0


Query: 9   SSSLTSSVGAARQRLGPKPSLGSSRKAAS-------FVVRA--------EATPPVKQGAN 68
           +S+LT S    +     +P + S+             VVRA        E  PP     +
Sbjct: 10  TSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPP-----D 69

Query: 69  RQLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGA 128
           R LWF       +LDGSLPGD+GFDPLGL SDP+        +W A  E+I+ R+AML  
Sbjct: 70  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLAV 129

Query: 129 AGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRF 188
            G I PE    LG I       W+       AG+  Y+AD  TLFV +M LMG+AE RR+
Sbjct: 130 TGIIIPECLERLGFI---ENFSWY------DAGSREYFADSTTLFVAQMVLMGWAEGRRW 189

Query: 189 QDWYNPGSMGKQYFLGLEKF---LGGSGDPAYPGGPLFNPLGFGK-DEKSMKELKLKEIK 248
            D   PGS+  +      K+   +    D  YPGG  F+ + +G+   + +  L+ KEIK
Sbjct: 190 ADLIKPGSVDIE-----PKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIK 249

Query: 249 NGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           NGRLAMLA LG+  Q   T   P +NL+ HL+DP + NV ++   H
Sbjct: 250 NGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270

[Close]

BLAST of Carg22685 vs. Swiss-Prot
Match: sp|Q9SY97|LHCA3_ARATH (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 9.7e-136
Identity = 238/274 (86.86%), Postives = 249/274 (90.88%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MA QALV SSSLTSSV  ARQ  G KP   +S+K +SFVV+A ATPPVKQGANR LWFAS
Sbjct: 1   MAAQALV-SSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
            QSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  SQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFV EMALMGFAEHRR QDWYNPGS
Sbjct: 121 LGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK L GSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. Swiss-Prot
Match: sp|P27522|CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 2.2e-135
Identity = 239/274 (87.23%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQAL+SSSS+++S  AARQ +G + S   +RK ASFVVRA +TPPVKQGANRQLWFAS
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSRISQSVTRK-ASFVVRAASTPPVKQGANRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDG LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
            G  GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEK LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQ LVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. Swiss-Prot
Match: sp|Q32904|CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhca3 PE=1 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 4.4e-128
Identity = 231/278 (83.09%), Postives = 244/278 (87.77%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPK---PSLGSSRKAASFVVRAEATPPVKQ-GANRQL 60
           MATQALVSSSSLT +  A RQ    +    S+G SRK    +VRA ATPPVKQ G +R L
Sbjct: 1   MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG---LVRAAATPPVKQGGVDRPL 60

Query: 61  WFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAI 120
           WFASKQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGA GAI
Sbjct: 61  WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAI 120

Query: 121 APEIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWY 180
           APE  G +GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDW 
Sbjct: 121 APEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWA 180

Query: 181 NPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLA 240
            PGSMGKQYFLGLEK  GGSG+PAYPGGP FNPLGFGKDEKS+KELKLKE+KNGRLAMLA
Sbjct: 181 KPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 240

Query: 241 ILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           ILGYFIQGLVTGVGPYQNLLDH++DPVNNNVLTSLKFH
Sbjct: 241 ILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

[Close]

BLAST of Carg22685 vs. Swiss-Prot
Match: sp|Q9C639|LHCA5_ARATH (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.1e-44
Identity = 98/222 (44.14%), Postives = 136/222 (61.26%), Query Frame = 0


Query: 54  RQLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGA 113
           R  W        YLDG+L GDYGFDPLGL  DPE        +W    E+++ RFAMLG 
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLGV 105

Query: 114 AGAIAPEIFGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRR 173
           AG +  ++  + G+      LP W++ G +     +++ A   TL V +  LMGFAE +R
Sbjct: 106 AGILFTDLLRTTGI----RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKR 165

Query: 174 FQDWYNPGSMGKQ--YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 233
           + D+ +PGS  K+  +F GLE  L G  +P YPGGPL NPLG  KD ++  + KLKEIKN
Sbjct: 166 YMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKN 225

Query: 234 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSL 272
           GRLAM+A+LG+F+Q  VT  GP  NL++HLS+P +  ++ +L
Sbjct: 226 GRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Carg22685 vs. Swiss-Prot
Match: sp|P13869|CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.9e-41
Identity = 107/257 (41.63%), Postives = 139/257 (54.09%), Query Frame = 0


Query: 8   SSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFASKQSLTYL 67
           SS    S VGA +        L  S+  A    R+ A   V    +R LWF       +L
Sbjct: 19  SSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWL 78

Query: 68  DGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL 127
           DGSLPGD+GFDPLGL SDPE        +W A  E+++ R+AMLGAAG   PE    +G+
Sbjct: 79  DGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 138

Query: 128 IPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQYF 187
           +   +   W+       AG   Y+ D  TLFV E+ L+G+AE RR+ D   PG +     
Sbjct: 139 LNTPS---WY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPI 198

Query: 188 LGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS-MKELKLKEIKNGRLAMLAILGYFIQGL 247
               K  G   D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q +
Sbjct: 199 FPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 258

Query: 248 VTGVGPYQNLLDHLSDP 263
            TG GP  NL  HL+DP
Sbjct: 259 YTGTGPIDNLFAHLADP 258

[Close]

BLAST of Carg22685 vs. TrEMBL
Match: tr|A0A0A0LXV0|A0A0A0LXV0_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G630330 PE=3 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 7.4e-149
Identity = 264/274 (96.35%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSVGAARQRLG +PS GSSRK+ASFVVRAEATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVGAARQRLGARPSFGSSRKSASFVVRAEATPPVKQGADRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. TrEMBL
Match: tr|A0A1S3BPK7|A0A1S3BPK7_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491949 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.1e-147
Identity = 262/274 (95.62%), Postives = 267/274 (97.45%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSVGAARQRLG KPS GSSRK+ASFVVRA ATPPVKQGA+RQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLTYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           FIQGLVTGVGPYQNLLDHLSDPVNNN+LTSLKFH
Sbjct: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Carg22685 vs. TrEMBL
Match: tr|B9SEZ7|B9SEZ7_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RCOM_1211480 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 5.7e-141
Identity = 248/274 (90.51%), Postives = 261/274 (95.26%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALV SSSLTSSV  ARQ LG + S GSSRK++SFVVRA +TPPVKQGA+RQLWFAS
Sbjct: 1   MATQALV-SSSLTSSVETARQILGARSSFGSSRKSSSFVVRASSTPPVKQGADRQLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSLTYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
            G  GLIPPETALPWF+TGVIPPAGTY+YWADPYTLFVFEMALMGFAEHRRFQDW  PGS
Sbjct: 121 LGKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           F+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. TrEMBL
Match: tr|A0A2P5DGC6|A0A2P5DGC6_PARAD (Chlorophyll a-b binding protein, chloroplastic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_067310 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 5.7e-141
Identity = 249/274 (90.88%), Postives = 263/274 (95.99%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSV AARQ LG +P+  S+R+++SFVVRA +TPPVKQGA+R LWFAS
Sbjct: 1   MATQALVSSSSLTSSVEAARQILGRRPT-QSTRRSSSFVVRAASTPPVKQGADRPLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRFAMLGAAGAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FG LGLIP ETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGKLGLIPEETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           F+QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg22685 vs. TrEMBL
Match: tr|A0A2P5EI49|A0A2P5EI49_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Trema orientalis OX=63057 GN=TorRG33x02_188940 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 3.7e-140
Identity = 247/274 (90.15%), Postives = 262/274 (95.62%), Query Frame = 0


Query: 1   MATQALVSSSSLTSSVGAARQRLGPKPSLGSSRKAASFVVRAEATPPVKQGANRQLWFAS 60
           MATQALVSSSSLTSSV AARQ LG +P+  S+R+++SFVVRA +TPPVKQGA+R LWFAS
Sbjct: 1   MATQALVSSSSLTSSVEAARQILGRRPT-QSTRRSSSFVVRAASTPPVKQGADRPLWFAS 60

Query: 61  KQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEI 120
           KQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGA GAIAPEI
Sbjct: 61  KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 120

Query: 121 FGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWYNPGS 180
           FG LGLIP ETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDW  PGS
Sbjct: 121 FGKLGLIPEETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240
           MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKS+K+LKLKE+KNGRLAMLAILGY
Sbjct: 181 MGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 275
           F+QGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH
Sbjct: 241 FVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

The following BLAST results are available for this feature:

BLAST of Carg22685 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933380.1	9.5e-156	100.00	chlorophyll a-b binding protein 8, chloroplastic [Cucurbita moschata]	[more]
XP_023006167.1	1.0e-154	99.27	chlorophyll a-b binding protein 8, chloroplastic [Cucurbita maxima] >XP_02353115...	[more]
XP_004139075.1	1.1e-148	96.35	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus] >K...	[more]
XP_008450298.1	1.6e-147	95.62	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo]	[more]
XP_022153224.1	3.4e-145	92.70	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Momordica char...	[more]

BLAST of Carg22685 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61520.1	5.4e-137	86.86	photosystem I light harvesting complex gene 3	[more]
AT1G45474.1	2.8e-45	44.14	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.5e-41	43.94	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	1.9e-41	40.75	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	7.0e-36	37.41	photosystem I light harvesting complex gene 6	[more]

BLAST of Carg22685 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SY97\|LHCA3_ARATH	9.7e-136	86.86	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
sp\|P27522\|CB13_SOLLC	2.2e-135	87.23	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
sp\|Q32904\|CB23_PEA	4.4e-128	83.09	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhc...	[more]
sp\|Q9C639\|LHCA5_ARATH	5.1e-44	44.14	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
sp\|P13869\|CB12_PETHY	6.9e-41	41.63	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of Carg22685 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXV0\|A0A0A0LXV0_CUCSA	7.4e-149	96.35	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3BPK7\|A0A1S3BPK7_CUCME	1.1e-147	95.62	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|B9SEZ7\|B9SEZ7_RICCO	5.7e-141	90.51	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RC...	[more]
tr\|A0A2P5DGC6\|A0A2P5DGC6_PARAD	5.7e-141	90.88	Chlorophyll a-b binding protein, chloroplastic OS=Parasponia andersonii OX=3476 ...	[more]
tr\|A0A2P5EI49\|A0A2P5EI49_9ROSA	3.7e-140	90.15	Chlorophyll a-b binding protein, chloroplastic OS=Trema orientalis OX=63057 GN=T...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22685-RA	Carg22685-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 83..254 e-value: 1.2E-74 score: 252.3
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..243 e-value: 2.0E-46 score: 158.4
None	No IPR available	PANTHER	PTHR21649:SF14	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 3-1, CHLOROPLASTIC	coord: 1..274
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 53..270
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..274

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22685	Cla001764	Watermelon (97103) v1	carwmB0532
Carg22685	Csa1G630330	Cucumber (Chinese Long) v2	carcuB0565
Carg22685	MELO3C015076	Melon (DHL92) v3.5.1	carmeB0541
Carg22685	ClCG03G012070	Watermelon (Charleston Gray)	carwcgB0520
Carg22685	CSPI01G31340	Wild cucumber (PI 183967)	carcpiB0571
Carg22685	Cucsa.355830	Cucumber (Gy14) v1	carcgyB0613
Carg22685	CmaCh11G009010	Cucurbita maxima (Rimu)	carcmaB0749
Carg22685	CmoCh10G009080	Cucurbita moschata (Rifu)	carcmoB0726
Carg22685	CmoCh11G009160	Cucurbita moschata (Rifu)	carcmoB0727
Carg22685	Lsi06G006340	Bottle gourd (USVL1VR-Ls)	carlsiB486
Carg22685	Cp4.1LG04g12530	Cucurbita pepo (Zucchini)	carcpeB0758
Carg22685	Cp4.1LG18g02160	Cucurbita pepo (Zucchini)	carcpeB0757
Carg22685	CsGy1G030510	Cucumber (Gy14) v2	carcgybB0542
Carg22685	MELO3C015076.2	Melon (DHL92) v3.6.1	carmedB0546
Carg22685	CsaV3_1G043710	Cucumber (Chinese Long) v3	carcucB0573
Carg22685	Cla97C03G062230	Watermelon (97103) v2	carwmbB0562
Carg22685	Bhi02G001201	Wax gourd	carwgoB0645

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22685	Carg17836	Silver-seed gourd	carcarB502

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22685	Cucurbita maxima (Rimu)	carcmaB0748
Carg22685	Watermelon (97103) v2	carwmbB0561