WMU64524 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU64524
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr3 : 20968016 .. 20968453 (+)
Sequence length	445

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGACCCTTACACACTCTTTGTATTAGAAATGGCTCTAATGGGCTTTGCTGAACACAGAAGATTTCAAGATTGGTCCAAGCCAGGGTCCATGGGAAAACAATACTTTTTGGGCCTAGAGAAGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTTGGGAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATATTGGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAAATTCCACTAGAAGAAGGGATATTATGTGAATTGTAATTTGTGCATTGTATATTAATATGGGTCACAGTCCCTTTTGGGTT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU64524 vs. TAIR10
Match: AT1G61520.1 (AT1G61520.1 photosystem I light harvesting complex gene 3)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 53/61 (86.89%), Postives = 52/61 (85.25%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           D YTLFVLEMALMGFAEHRR QDW  PGSMGKQYFLGLEK L GSG+PAYPGGP FNPLG
Sbjct: 151 DNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. TAIR10
Match: AT1G29920.1 (AT1G29920.1 chlorophyll A/B-binding protein 2)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

Query: 294  348
           
Sbjct: 278  255

[Close]

BLAST of WMU64524 vs. TAIR10
Match: AT1G29930.1 (AT1G29930.1 chlorophyll A/B binding protein 1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

Query: 294  348
           
Sbjct: 278  255

[Close]

BLAST of WMU64524 vs. TAIR10
Match: AT2G34420.1 (AT2G34420.1 photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

Query: 294  348
           
Sbjct: 276  253

[Close]

BLAST of WMU64524 vs. TAIR10
Match: AT2G34430.1 (AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254

Query: 294  348
           
Sbjct: 277  254

[Close]

BLAST of WMU64524 vs. Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 58/61 (95.08%), Postives = 57/61 (93.44%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           D YTLFVLEMALMGFAEHRRFQDW+KPGSMGKQYFLGLEK LGGSGDPAYPGGPLFNPLG
Sbjct: 151 DNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-27
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           D YTLFVLEMALMGFAEHRRFQDW+KPGSMGKQYFLGLEK  GGSG+PAYPGGP FNPLG
Sbjct: 153 DNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLG 212

Query: 62  F 121
           F
Sbjct: 213 F 213

Query: 122  181
           
Sbjct: 273  213

Query: 182  185
           
Sbjct: 333  213

[Close]

BLAST of WMU64524 vs. Swiss-Prot
Match: LHCA3_ARATH (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-25
Identity = 53/61 (86.89%), Postives = 52/61 (85.25%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           D YTLFVLEMALMGFAEHRR QDW  PGSMGKQYFLGLEK L GSG+PAYPGGP FNPLG
Sbjct: 151 DNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-09
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ +VTG GP +NL DHLSDPVNNN
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256

Query: 294  348
           
Sbjct: 279  256

[Close]

BLAST of WMU64524 vs. Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 3


Query: 234 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNN 293
           NGRLAM ++ G+FVQ LVTG GP +NL DHL+DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254

Query: 294  348
           
Sbjct: 277  254

[Close]

BLAST of WMU64524 vs. NCBI nr
Match: gi|659098797|ref|XP_008450298.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 7.2e-29
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           DPYTLFVLEMALMGFAEHRRFQDW+KPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG
Sbjct: 151 DPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. NCBI nr
Match: gi|255567170|ref|XP_002524566.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ricinus communis])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           DPYTLFV EMALMGFAEHRRFQDW+KPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG
Sbjct: 151 DPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. NCBI nr
Match: gi|449442612|ref|XP_004139075.1| (PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           DPYTLFV EMALMGFAEHRRFQDW+KPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG
Sbjct: 151 DPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 210

Query: 62  F 121
           F
Sbjct: 211 F 211

Query: 122  181
           
Sbjct: 271  211

Query: 182  185
           
Sbjct: 331  211

[Close]

BLAST of WMU64524 vs. NCBI nr
Match: gi|116519121|gb|ABJ99590.1| (type III chlorophyll a/b-binding protein [Lycoris aurea])

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           DPYTLFVLEMALMGFAEHRRFQDW+KPGSMGKQYFLG EKFLGGSGDPAYPGGP+FNPLG
Sbjct: 153 DPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLG 212

Query: 62  F 121
           F
Sbjct: 213 F 213

Query: 122  181
           
Sbjct: 273  213

Query: 182  185
           
Sbjct: 333  213

[Close]

BLAST of WMU64524 vs. NCBI nr
Match: gi|116519125|gb|ABJ99591.1| (type III chlorophyll a/b-binding protein [Lycoris aurea])

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   DPYTLFVLEMALMGFAEHRRFQDWSKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLG 61
           DPYTLFVLEMALMGFAEHRRFQDW+KPGSMGKQYFLG EKFLGGSGDPAYPGGP+FNPLG
Sbjct: 153 DPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLG 212

Query: 62  F 121
           F
Sbjct: 213 F 213

Query: 122  181
           
Sbjct: 273  213

Query: 182  185
           
Sbjct: 333  213

The following BLAST results are available for this feature:

BLAST of WMU64524 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61520.1	2.7e-26	86.89	photosystem I light harvesting complex gene 3	[more]
AT1G29920.1	4.6e-10	68.42	chlorophyll A/B-binding protein 2	[more]
AT1G29930.1	4.6e-10	68.42	chlorophyll A/B binding protein 1	[more]
AT2G34420.1	4.6e-10	68.42	photosystem II light harvesting complex gene B1B2	[more]
AT2G34430.1	4.6e-10	68.42	light-harvesting chlorophyll-protein complex II subunit B1	[more]

BLAST of WMU64524 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB13_SOLLC	2.1e-28	95.08	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8...	[more]
CB23_PEA	6.7e-27	90.16	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 ...	[more]
LHCA3_ARATH	4.8e-25	86.89	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
CB28_PEA	3.7e-09	71.05	Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 S...	[more]
CB25_NICPL	4.8e-09	71.05	Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN...	[more]

BLAST of WMU64524 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098797\|ref\|XP_008450298.1\|	7.2e-29	98.36	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis melo]	[more]
gi\|255567170\|ref\|XP_002524566.1\|	2.1e-28	96.72	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Ricinus communis]	[more]
gi\|449442612\|ref\|XP_004139075.1\|	2.1e-28	96.72	PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Cucumis sativus]	[more]
gi\|116519121\|gb\|ABJ99590.1\|	3.6e-28	95.08	type III chlorophyll a/b-binding protein [Lycoris aurea]	[more]
gi\|116519125\|gb\|ABJ99591.1\|	3.6e-28	95.08	type III chlorophyll a/b-binding protein [Lycoris aurea]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla001764	Cla001764	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0111118	S2_0111118	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..121 score: 1.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..83 score: 6.1
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 1..109 score: 1.3
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 2..110 score: 8.76
None	No IPR available	PANTHER	PTHR21649:SF14	PSI TYPE III CHLOROPHYLL A/B-BINDING PROTEIN	coord: 1..121 score: 1.4