Cla001633 (gene) Watermelon (97103) v1

Overview
NameCla001633
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRAR1 protein (AHRD V1 *-*- B6EBD3_SOYBN); contains Interpro domain(s) IPR007051 CHORD
LocationChr11 : 5392310 .. 5392928 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGGTTAACACACTCACACTCTTATTCTCCTATCAACTCCAACAAACTTAAAATTAAGGATCGATGTTCAGTTTCAAATTTATTAAACTATCCCTAGTGGGGAATATGTTCATAATGGAAATCAATGAAGATGAATTAGTTTAGTCTCTCTTCAAAAAAAAAAAAAAAAGAAAAAGTTTAGTCTGACAACAAGTGTGCAGAAGTTCTTCCACAGCTTTTGGGAATTTAGTGCTCATGACTGGTTTAACATACTTTATTGAATGATGCTTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA

mRNA sequence

ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA

Coding sequence (CDS)

ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA

Protein sequence

MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVVPFTSFHLILRKCSGLKNFQMIWLYLVDDWGVFPPSAFQRERPLSWASGGVHVIVGSLRGTRRREIEECFVVWLPSEVWSC
Homology
[Close]
BLAST of Cla001633 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1 

Query: 6  AGVRCQRIGCNASFTEDDNPEGSCQYHDS 35
          A  RCQRIGC+A+FT+D+NP+GSCQYH S
Sbjct: 22 APARCQRIGCDATFTDDNNPDGSCQYHPS 50

[Close]
BLAST of Cla001633 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1 

Query: 8  VRCQRIGCNASFTEDDNPEGSCQYHDS 35
          ++CQRIGCNA FT+DDNP+GSCQ+H S
Sbjct: 10 LQCQRIGCNAMFTDDDNPQGSCQFHAS 36

[Close]
BLAST of Cla001633 vs. TrEMBL
Match: B9R9M1_RICCO (Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 35
          ME ++  +RCQRIGCNA+FT+DDNPEGSCQYHD+
Sbjct: 1  MEQEVVRLRCQRIGCNATFTDDDNPEGSCQYHDA 34

[Close]
BLAST of Cla001633 vs. TrEMBL
Match: A0A061G0A5_THECC (Binding,zinc ion binding isoform 1 OS=Theobroma cacao GN=TCM_015010 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVV 37
          M  Q   +RCQRIGCNA+FTEDDNPEGSC YHDS +
Sbjct: 1  MAEQADKLRCQRIGCNATFTEDDNPEGSCTYHDSPI 36

[Close]
BLAST of Cla001633 vs. TrEMBL
Match: K4DAT6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 8  VRCQRIGCNASFTEDDNPEGSCQYHDSVVPFTSFH 43
          +RCQRIGCNA+FTEDDNPEGSC YH+S+ P   FH
Sbjct: 4  LRCQRIGCNATFTEDDNPEGSCTYHESIHPL--FH 36

[Close]
BLAST of Cla001633 vs. TrEMBL
Match: A0A0L9TZN0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g219300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVVPF 39
          ME     VRCQRIGC+A+F+EDDNP+GSC+YHDS++ F
Sbjct: 1  MEKTTLKVRCQRIGCDATFSEDDNPDGSCRYHDSLIFF 38

[Close]
BLAST of Cla001633 vs. TrEMBL
Match: G8XUU9_9ROSA (Rar OS=Malus hupehensis PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 1  MEHQIAGV-RCQRIGCNASFTEDDNPEGSCQYHDS 35
          ME Q A + RCQRIGCNA F+EDDNPEGSCQYHDS
Sbjct: 1  MEGQRAALFRCQRIGCNAMFSEDDNPEGSCQYHDS 35

[Close]
BLAST of Cla001633 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVV 37
          MEHQI  V CQRIGCNA FTEDDNPEGSCQYHDS +
Sbjct: 1  MEHQIVRVPCQRIGCNALFTEDDNPEGSCQYHDSPI 36

[Close]
BLAST of Cla001633 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 30.0 bits (66), Expect = 3.3e+03
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1 

Query: 10  CQRIGCNASFTEDDNPEGSCQYH 33
           C+  GC  +FTE +N + +C YH
Sbjct: 154 CKNKGCGKTFTEMENHDTACSYH 176


HSP 2 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 35
          MEHQI  V CQRIGCNA FTEDDNPEGSCQYHDS
Sbjct: 1  MEHQIVRVPCQRIGCNALFTEDDNPEGSCQYHDS 34

[Close]
BLAST of Cla001633 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus])

HSP 1 Score: 30.0 bits (66), Expect = 3.3e+03
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1 

Query: 10  CQRIGCNASFTEDDNPEGSCQYH 33
           C+  GC  +FTE +N + +C YH
Sbjct: 155 CKNKGCGKTFTEMENHDTACSYH 177


HSP 2 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 35
          ME ++  +RCQRIGCNA+FT+DDNPEGSCQYHD+
Sbjct: 1  MEQEVVRLRCQRIGCNATFTDDDNPEGSCQYHDA 34

[Close]
BLAST of Cla001633 vs. NCBI nr
Match: gi|1009122162|ref|XP_015877853.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1 [Ziziphus jujuba])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1 

Query: 4  QIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVVPFTS 41
          Q A VRCQRIGCNA F+EDDNPEGSCQYHD    F S
Sbjct: 5  QSARVRCQRIGCNAMFSEDDNPEGSCQYHDIDCVFNS 41

[Close]
BLAST of Cla001633 vs. NCBI nr
Match: gi|590672013|ref|XP_007038490.1| (Binding,zinc ion binding isoform 1 [Theobroma cacao])

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 1  MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVV 37
          M  Q   +RCQRIGCNA+FTEDDNPEGSC YHDS +
Sbjct: 1  MAEQADKLRCQRIGCNATFTEDDNPEGSCTYHDSPI 36

The following BLAST results are available for this feature:
BLAST of Cla001633 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAR1_ORYSJ1.3e-0672.41Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp... [more]
RAR1_ARATH2.3e-0674.07Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thalia... [more]
BLAST of Cla001633 vs. TrEMBL
Match NameE-valueIdentityDescription
B9R9M1_RICCO6.5e-0873.53Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1[more]
A0A061G0A5_THECC5.5e-0772.22Binding,zinc ion binding isoform 1 OS=Theobroma cacao GN=TCM_015010 PE=4 SV=1[more]
K4DAT6_SOLLC7.2e-0774.29Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0L9TZN0_PHAAN9.4e-0765.79Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g219300 PE=4 SV=1[more]
G8XUU9_9ROSA1.2e-0680.00Rar OS=Malus hupehensis PE=2 SV=1[more]
BLAST of Cla001633 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668194|ref|XP_011649053.1|3.8e-0983.33PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2... [more]
gi|778668194|ref|XP_011649053.1|3.3e+0343.48PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2... [more]
gi|449442307|ref|XP_004138923.1|3.3e+0343.48PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1... [more]
gi|1009122162|ref|XP_015877853.1|6.1e-0775.68PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing pr... [more]
gi|590672013|ref|XP_007038490.1|7.9e-0772.22Binding,zinc ion binding isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007051CHORD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0009626 plant-type hypersensitive response
biological_process GO:0050821 protein stabilization
biological_process GO:0002679 respiratory burst involved in defense response
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0042742 defense response to bacterium
biological_process GO:0044699 single-organism process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051879 Hsp90 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU09234watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU13386watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU29273watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001633Cla001633.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU09234WMU09234transcribed_cluster
WMU13386WMU13386transcribed_cluster
WMU29273WMU29273transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007051CHORD domainPFAMPF04968CHORDcoord: 9..38
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001633Cla97C11G214780Watermelon (97103) v2wmwmbB363
Cla001633ClCG11G008970Watermelon (Charleston Gray)wcgwmB104
Cla001633CSPI02G08450Wild cucumber (PI 183967)cpiwmB168
Cla001633CsaV3_2G010830Cucumber (Chinese Long) v3cucwmB177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001633Bottle gourd (USVL1VR-Ls)lsiwmB119