WMU09234 (transcribed_cluster) Watermelon (97103) v1

NameWMU09234
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCysteine and histidine-rich domain-containing RAR1-like protein
LocationChr11 : 5390598 .. 5392557 (+)
Sequence length497
The following sequences are available for this feature:

transcribed_cluster sequence

ATTCTCTTTTTCAACAACCCACACTCTCTCTCTGCGTTTTGCATAAGCCGAACAGCCTCCCACCGCACAACCTTCTCATCCCGTCACCTGTTCAGCTTCTTCTCCGGCGGAAACTGCGGCGCAGTTACGTCCAAAATCGAGAGCAGTGTCCTCCACGACCAGTGACGTGTTTCTGACGGGCGACTCTCAGTTCTCGGTGTTCCAGCAGCTCCTTTTAGCGTTTTCATCCTTTTCGTTTAATAGAGCAGCTATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGGTTAACACACTCACACTCTTATTCTCCTATCAACTCCAACAAACTTAAAATTAAGGATCGATGTTCAGTTTCAAATTTATTAAACTATCCCTAGTGGGGAATATGTTCATAATGGAAATCAATGAAGATGAATTAGTTTAG
BLAST of WMU09234 vs. TAIR10
Match: AT5G51700.1 (AT5G51700.1 protein binding;zinc ion binding)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2

Query: 272 VRCQRIGCNASFTEDDNPEGSCQYHDS 331
           ++CQRIGCNA FT+DDNP+GSCQ+H S
Sbjct: 10  LQCQRIGCNAMFTDDDNPQGSCQFHAS 36

Query: 332 353
           
Sbjct: 70  36

BLAST of WMU09234 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 2

Query: 266 AGVRCQRIGCNASFTEDDNPEGSCQYHDS 325
           A  RCQRIGC+A+FT+D+NP+GSCQYH S
Sbjct: 22  APARCQRIGCDATFTDDNNPDGSCQYHPS 50

Query: 326 353
           
Sbjct: 82  50

BLAST of WMU09234 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 2

Query: 272 VRCQRIGCNASFTEDDNPEGSCQYHDS 331
           ++CQRIGCNA FT+DDNP+GSCQ+H S
Sbjct: 10  LQCQRIGCNAMFTDDDNPQGSCQFHAS 36

Query: 332 353
           
Sbjct: 70  36

BLAST of WMU09234 vs. TrEMBL
Match: B9R9M1_RICCO (Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 2

Query: 251 MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 310
           ME ++  +RCQRIGCNA+FT+DDNPEGSCQYHD+
Sbjct: 1   MEQEVVRLRCQRIGCNATFTDDDNPEGSCQYHDA 34

Query: 311 353
           
Sbjct: 61  34

BLAST of WMU09234 vs. TrEMBL
Match: A0A061G0A5_THECC (Binding,zinc ion binding isoform 1 OS=Theobroma cacao GN=TCM_015010 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 2

Query: 251 MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 310
           M  Q   +RCQRIGCNA+FTEDDNPEGSC YHDS
Sbjct: 1   MAEQADKLRCQRIGCNATFTEDDNPEGSCTYHDS 34

Query: 311 353
           
Sbjct: 61  34

BLAST of WMU09234 vs. TrEMBL
Match: G8XUU9_9ROSA (Rar OS=Malus hupehensis PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2

Query: 251 MEHQIAGV-RCQRIGCNASFTEDDNPEGSCQYHDS 310
           ME Q A + RCQRIGCNA F+EDDNPEGSCQYHDS
Sbjct: 1   MEGQRAALFRCQRIGCNAMFSEDDNPEGSCQYHDS 35

Query: 311 353
           
Sbjct: 61  35

BLAST of WMU09234 vs. TrEMBL
Match: G8XUU9_9ROSA (Rar OS=Malus hupehensis PE=2 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 8.7e+02
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 2

Query: 278 CQRIGCNASFTEDDNPEGSCQYH 337
           C   GC+ +F E DN E +C YH
Sbjct: 160 CMNKGCDQTFKEKDNHENACSYH 182

Query: 338 347
           
Sbjct: 220 182


HSP 2 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 2

Query: 272 VRCQRIGCNASFTEDDNPEGSCQYHDS 331
           +RCQRIGCNA+FTEDDNPEGSC YHDS
Sbjct: 4   LRCQRIGCNATFTEDDNPEGSCTYHDS 30

Query: 332 353
           
Sbjct: 64  30

BLAST of WMU09234 vs. TrEMBL
Match: Q32ZJ5_SOLTU (RAR1-like protein (Fragment) OS=Solanum tuberosum PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 2

Query: 272 VRCQRIGCNASFTEDDNPEGSCQYHDS 331
           +RCQRIGCNA+FTEDDNPEGSC YHDS
Sbjct: 4   LRCQRIGCNATFTEDDNPEGSCTYHDS 30

Query: 332 353
           
Sbjct: 64  30

BLAST of WMU09234 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 2

Query: 251 MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 310
           MEHQI  V CQRIGCNA FTEDDNPEGSCQYHDS
Sbjct: 1   MEHQIVRVPCQRIGCNALFTEDDNPEGSCQYHDS 34

Query: 311 353
           
Sbjct: 61  34

BLAST of WMU09234 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 2

Query: 251 MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 310
           MEHQI  V CQRIGCNA FTEDDNPEGSCQYHDS
Sbjct: 1   MEHQIVRVPCQRIGCNALFTEDDNPEGSCQYHDS 34

Query: 311 353
           
Sbjct: 61  34

BLAST of WMU09234 vs. NCBI nr
Match: gi|255539663|ref|XP_002510896.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 [Ricinus communis])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 2

Query: 251 MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDS 310
           ME ++  +RCQRIGCNA+FT+DDNPEGSCQYHD+
Sbjct: 1   MEQEVVRLRCQRIGCNATFTDDDNPEGSCQYHDA 34

Query: 311 353
           
Sbjct: 61  34

BLAST of WMU09234 vs. NCBI nr
Match: gi|1009122162|ref|XP_015877853.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1 [Ziziphus jujuba])

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-07
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2

Query: 260 QIAGVRCQRIGCNASFTEDDNPEGSCQYHD 319
           Q A VRCQRIGCNA F+EDDNPEGSCQYHD
Sbjct: 5   QSARVRCQRIGCNAMFSEDDNPEGSCQYHD 34

Query: 320 350
           
Sbjct: 65  34

BLAST of WMU09234 vs. NCBI nr
Match: gi|971538327|ref|XP_015158654.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Solanum tuberosum])

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-07
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 2

Query: 272 VRCQRIGCNASFTEDDNPEGSCQYHDSV 331
           +RCQRIGCNA+FTEDDNPEGSC YHDSV
Sbjct: 4   LRCQRIGCNATFTEDDNPEGSCTYHDSV 31

Query: 332 356
           
Sbjct: 64  31

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G51700.11.8e-0774.07 protein binding;zinc ion binding[more]
Match NameE-valueIdentityDescription
RAR1_ORYSJ1.9e-0672.41Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp... [more]
RAR1_ARATH3.3e-0674.07Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thalia... [more]
Match NameE-valueIdentityDescription
B9R9M1_RICCO9.3e-0873.53Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1[more]
A0A061G0A5_THECC1.0e-0676.47Binding,zinc ion binding isoform 1 OS=Theobroma cacao GN=TCM_015010 PE=4 SV=1[more]
G8XUU9_9ROSA1.7e-0680.00Rar OS=Malus hupehensis PE=2 SV=1[more]
G8XUU9_9ROSA8.7e+0247.83Rar OS=Malus hupehensis PE=2 SV=1[more]
Q32ZJ5_SOLTU3.0e-0688.89RAR1-like protein (Fragment) OS=Solanum tuberosum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778668194|ref|XP_011649053.1|4.1e-0988.24PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2... [more]
gi|449442307|ref|XP_004138923.1|4.1e-0988.24PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1... [more]
gi|255539663|ref|XP_002510896.1|7.8e-0873.53PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 [Ricinus c... [more]
gi|1009122162|ref|XP_015877853.1|8.6e-0786.67PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing pr... [more]
gi|971538327|ref|XP_015158654.1|8.6e-0789.29PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla001633Cla001633gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0113315S1_0113315EST
S2_0003417S2_0003417EST
S3_0177674S3_0177674EST
S3_0180640S3_0180640EST