Cla001633.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGGTTAACACACTCACACTCTTATTCTCCTATCAACTCCAACAAACTTAAAATTAAGGATCGATGTTCAGTTTCAAATTTATTAAACTATCCCTAGTGGGGAATATGTTCATAATGGAAATCAATGAAGATGAATTAGTTTAGTCTCTCTTCAAAAAAAAAAAAAAAAGAAAAAGTTTAGTCTGACAACAAGTGTGCAGAAGTTCTTCCACAGCTTTTGGGAATTTAGTGCTCATGACTGGTTTAACATACTTTATTGAATGATGCTTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA ATGGAGCATCAGATTGCTGGGGTTCGCTGCCAGAGAATTGGCTGCAATGCCTCGTTCACTGAGGACGACAATCCTGAAGGTTCTTGTCAATACCATGACTCGGTAGTCCCATTCACATCGTTTCATTTGATATTAAGAAAATGTTCTGGACTAAAAAATTTCCAAATGATATGGTTATATTTGGTTGATGATTGGGGAGTTTTTCCTCCATCTGCCTTTCAAAGAGAAAGGCCGCTTTCTTGGGCTAGTGGGGGTGTGCACGTCATTGTGGGATCATTGAGGGGGACTCGGAGGAGAGAAATAGAAGAGTGTTTTGTGGTGTGGCTCCCTAGTGAGGTTTGGTCTTGTTGA MEHQIAGVRCQRIGCNASFTEDDNPEGSCQYHDSVVPFTSFHLILRKCSGLKNFQMIWLYLVDDWGVFPPSAFQRERPLSWASGGVHVIVGSLRGTRRREIEECFVVWLPSEVWSC
BLAST of Cla001633 vs. Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06 Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 1
BLAST of Cla001633 vs. Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06 Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1
BLAST of Cla001633 vs. TrEMBL
Match: B9R9M1_RICCO (Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 6.5e-08 Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1
BLAST of Cla001633 vs. TrEMBL
Match: A0A061G0A5_THECC (Binding,zinc ion binding isoform 1 OS=Theobroma cacao GN=TCM_015010 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1
BLAST of Cla001633 vs. TrEMBL
Match: K4DAT6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 7.2e-07 Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
BLAST of Cla001633 vs. TrEMBL
Match: A0A0L9TZN0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g219300 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07 Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1
BLAST of Cla001633 vs. TrEMBL
Match: G8XUU9_9ROSA (Rar OS=Malus hupehensis PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1
BLAST of Cla001633 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus]) HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09 Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1
BLAST of Cla001633 vs. NCBI nr
Match: gi|778668194|ref|XP_011649053.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus]) HSP 1 Score: 30.0 bits (66), Expect = 3.3e+03 Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
HSP 2 Score: 69.3 bits (168), Expect = 5.0e-09 Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1
BLAST of Cla001633 vs. NCBI nr
Match: gi|449442307|ref|XP_004138923.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus]) HSP 1 Score: 30.0 bits (66), Expect = 3.3e+03 Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
HSP 2 Score: 65.1 bits (157), Expect = 9.3e-08 Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1
BLAST of Cla001633 vs. NCBI nr
Match: gi|1009122162|ref|XP_015877853.1| (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1 [Ziziphus jujuba]) HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07 Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1
BLAST of Cla001633 vs. NCBI nr
Match: gi|590672013|ref|XP_007038490.1| (Binding,zinc ion binding isoform 1 [Theobroma cacao]) HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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