ClCG11G018150 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G018150
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionKeratin-associated protein 5-2
LocationCG_Chr11 : 31340411 .. 31340968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSIPKGNIPKFSSVGPTNGDCCNYGNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV
Homology
[Close]
BLAST of ClCG11G018150 vs. TrEMBL
Match: A0A0A0L3F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 1 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICG-------------GYSCC---------------- 120
           P  ++ K SS+ P NGDCC+YG  CG             G S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQWQ   GC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQWQ---GCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]
BLAST of ClCG11G018150 vs. TrEMBL
Match: G4Q4C3_ACIIR (Uncharacterized protein OS=Acidaminococcus intestini (strain RyC-MR95) GN=Acin_1899 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-07
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 1 

Query: 82  GNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGC-----QSCGCQVRMN 139
           GN C   +CC    GC SC TC  C  Q+CQ CQGCQ CQ CQ C     Q+C C    N
Sbjct: 62  GNCCQA-NCCQTCQGCQSCQTCQGC--QKCQTCQGCQTCQGCQKCQYYMTQNCNCDCNCN 120

[Close]
BLAST of ClCG11G018150 vs. TrEMBL
Match: U3JG19_FICAL (Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 27/50 (54.00%), Postives = 28/50 (56.00%), Query Frame = 1 

Query: 85  CGGYSCCGGSSGCPSCYTCSPCQ-WQECQGCQGCQECQECQGCQSC-GCQ 133
           C  +  C G  GC  C  C   Q  Q CQGCQ CQ CQ CQGCQ C GCQ
Sbjct: 5   CQVFQVCQGCQGCQVCQVCQVYQVCQVCQGCQVCQGCQVCQGCQGCQGCQ 54

[Close]
BLAST of ClCG11G018150 vs. NCBI nr
Match: gi|700199979|gb|KGN55137.1| (hypothetical protein Csa_4G637770 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 2.5e-63
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 1 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICG-------------GYSCC---------------- 120
           P  ++ K SS+ P NGDCC+YG  CG             G S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQWQ   GC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQWQ---GCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]
BLAST of ClCG11G018150 vs. NCBI nr
Match: gi|503894910|ref|WP_014128904.1| (hypothetical protein [Acidaminococcus intestini])

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 1 

Query: 82  GNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGC-----QSCGCQVRMN 139
           GN C   +CC    GC SC TC  C  Q+CQ CQGCQ CQ CQ C     Q+C C    N
Sbjct: 62  GNCCQA-NCCQTCQGCQSCQTCQGC--QKCQTCQGCQTCQGCQKCQYYMTQNCNCDCNCN 120

The following BLAST results are available for this feature:
BLAST of ClCG11G018150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F6_CUCSA1.7e-6359.07Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1[more]
G4Q4C3_ACIIR5.1e-0748.39Uncharacterized protein OS=Acidaminococcus intestini (strain RyC-MR95) GN=Acin_1... [more]
U3JG19_FICAL4.4e-0654.00Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1[more]
BLAST of ClCG11G018150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199979|gb|KGN55137.1|2.5e-6359.07hypothetical protein Csa_4G637770 [Cucumis sativus][more]
gi|503894910|ref|WP_014128904.1|7.4e-0748.39hypothetical protein [Acidaminococcus intestini][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G018150.1ClCG11G018150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G018150Csa4G637770Cucumber (Chinese Long) v2cuwcgB279
ClCG11G018150Cla023393Watermelon (97103) v1wcgwmB103
ClCG11G018150Cla97C11G224230Watermelon (97103) v2wcgwmbB064
ClCG11G018150CSPI04G23580Wild cucumber (PI 183967)cpiwcgB289
ClCG11G018150CmaCh09G008740Cucurbita maxima (Rimu)cmawcgB015
ClCG11G018150CmoCh09G008630Cucurbita moschata (Rifu)cmowcgB008
ClCG11G018150Lsi04G013260Bottle gourd (USVL1VR-Ls)lsiwcgB265
ClCG11G018150Cp4.1LG06g06910Cucurbita pepo (Zucchini)cpewcgB694
ClCG11G018150CsaV3_4G033800Cucumber (Chinese Long) v3cucwcgB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G018150Silver-seed gourdcarwcgB0923
ClCG11G018150Cucumber (Chinese Long) v3cucwcgB012
ClCG11G018150Cucumber (Chinese Long) v3cucwcgB454
ClCG11G018150Watermelon (97103) v2wcgwmbB061
ClCG11G018150Watermelon (97103) v2wcgwmbB071
ClCG11G018150Wax gourdwcgwgoB168
ClCG11G018150Wax gourdwcgwgoB181
ClCG11G018150Watermelon (Charleston Gray)wcgwcgB062
ClCG11G018150Watermelon (Charleston Gray)wcgwcgB066
ClCG11G018150Cucumber (Gy14) v1cgywcgB021
ClCG11G018150Cucumber (Gy14) v1cgywcgB192
ClCG11G018150Cucumber (Gy14) v1cgywcgB201
ClCG11G018150Cucumber (Gy14) v1cgywcgB580
ClCG11G018150Cucurbita maxima (Rimu)cmawcgB178
ClCG11G018150Cucurbita maxima (Rimu)cmawcgB340
ClCG11G018150Cucurbita maxima (Rimu)cmawcgB394
ClCG11G018150Cucurbita moschata (Rifu)cmowcgB169
ClCG11G018150Cucurbita moschata (Rifu)cmowcgB338
ClCG11G018150Cucurbita moschata (Rifu)cmowcgB392
ClCG11G018150Wild cucumber (PI 183967)cpiwcgB011
ClCG11G018150Wild cucumber (PI 183967)cpiwcgB452
ClCG11G018150Cucumber (Chinese Long) v2cuwcgB009
ClCG11G018150Cucumber (Chinese Long) v2cuwcgB430
ClCG11G018150Melon (DHL92) v3.5.1mewcgB129
ClCG11G018150Melon (DHL92) v3.5.1mewcgB464
ClCG11G018150Melon (DHL92) v3.5.1mewcgB512
ClCG11G018150Watermelon (97103) v1wcgwmB092
ClCG11G018150Watermelon (97103) v1wcgwmB097
ClCG11G018150Cucurbita pepo (Zucchini)cpewcgB449
ClCG11G018150Cucurbita pepo (Zucchini)cpewcgB488
ClCG11G018150Bottle gourd (USVL1VR-Ls)lsiwcgB123
ClCG11G018150Bottle gourd (USVL1VR-Ls)lsiwcgB167
ClCG11G018150Cucumber (Gy14) v2cgybwcgB010
ClCG11G018150Cucumber (Gy14) v2cgybwcgB259
ClCG11G018150Melon (DHL92) v3.6.1medwcgB124
ClCG11G018150Melon (DHL92) v3.6.1medwcgB457
ClCG11G018150Melon (DHL92) v3.6.1medwcgB507
ClCG11G018150Silver-seed gourdcarwcgB0142
ClCG11G018150Silver-seed gourdcarwcgB0161
ClCG11G018150Silver-seed gourdcarwcgB0305