ClCG11G018150.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG11G018150.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionKeratin-associated protein 5-2
LocationCG_Chr11 : 31340411 .. 31340968 (+)
Sequence length558
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSIPKGNIPKFSSVGPTNGDCCNYGNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV
Homology
[Close]
BLAST of ClCG11G018150.1 vs. TrEMBL
Match: A0A0A0L3F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 1 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICG-------------GYSCC---------------- 120
           P  ++ K SS+ P NGDCC+YG  CG             G S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQWQ   GC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQWQ---GCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]
BLAST of ClCG11G018150.1 vs. TrEMBL
Match: G4Q4C3_ACIIR (Uncharacterized protein OS=Acidaminococcus intestini (strain RyC-MR95) GN=Acin_1899 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-07
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 1 

Query: 82  GNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGC-----QSCGCQVRMN 139
           GN C   +CC    GC SC TC  C  Q+CQ CQGCQ CQ CQ C     Q+C C    N
Sbjct: 62  GNCCQA-NCCQTCQGCQSCQTCQGC--QKCQTCQGCQTCQGCQKCQYYMTQNCNCDCNCN 120

[Close]
BLAST of ClCG11G018150.1 vs. TrEMBL
Match: U3JG19_FICAL (Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 27/50 (54.00%), Postives = 28/50 (56.00%), Query Frame = 1 

Query: 85  CGGYSCCGGSSGCPSCYTCSPCQ-WQECQGCQGCQECQECQGCQSC-GCQ 133
           C  +  C G  GC  C  C   Q  Q CQGCQ CQ CQ CQGCQ C GCQ
Sbjct: 5   CQVFQVCQGCQGCQVCQVCQVYQVCQVCQGCQVCQGCQVCQGCQGCQGCQ 54

[Close]
BLAST of ClCG11G018150.1 vs. NCBI nr
Match: gi|700199979|gb|KGN55137.1| (hypothetical protein Csa_4G637770 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 2.5e-63
Identity = 127/215 (59.07%), Postives = 149/215 (69.30%), Query Frame = 1 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICG-------------GYSCC---------------- 120
           P  ++ K SS+ P NGDCC+YG  CG             G S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEP 180
            GGSS C SC TCS CQWQ   GC GCQECQ CQGCQSCGCQ  M++SKV+Q+S+Q  EP
Sbjct: 121 GGGSSSCQSCNTCSSCQWQ---GCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP 180

Query: 181 EPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
             P+VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 -APVVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]
BLAST of ClCG11G018150.1 vs. NCBI nr
Match: gi|503894910|ref|WP_014128904.1| (hypothetical protein [Acidaminococcus intestini])

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 1 

Query: 82  GNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGC-----QSCGCQVRMN 139
           GN C   +CC    GC SC TC  C  Q+CQ CQGCQ CQ CQ C     Q+C C    N
Sbjct: 62  GNCCQA-NCCQTCQGCQSCQTCQGC--QKCQTCQGCQTCQGCQKCQYYMTQNCNCDCNCN 120

The following BLAST results are available for this feature:
BLAST of ClCG11G018150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F6_CUCSA1.7e-6359.07Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1[more]
G4Q4C3_ACIIR5.1e-0748.39Uncharacterized protein OS=Acidaminococcus intestini (strain RyC-MR95) GN=Acin_1... [more]
U3JG19_FICAL4.4e-0654.00Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1[more]
BLAST of ClCG11G018150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199979|gb|KGN55137.1|2.5e-6359.07hypothetical protein Csa_4G637770 [Cucumis sativus][more]
gi|503894910|ref|WP_014128904.1|7.4e-0748.39hypothetical protein [Acidaminococcus intestini][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG11G018150ClCG11G018150gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG11G018150.1ClCG11G018150.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG11G018150.1.cds1ClCG11G018150.1.cds1CDS