Lsi04G013260 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G013260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 21050837 .. 21051391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTGCAAAAATTAGTTTACTGGTTGGTCTCTTGGCGTTTGTCTGCTTAAGCCTCTGCTCCGCCCATCGAATTCTCAAGAACAACGATGCTGAAAACCAATTAATAAGTGACAATGTGCCTTCTGGACAAGATAATCACCTACAAAATTCCAGCAATGCTGAGCTGAAAAGTATACCGAAAGGCAGCATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCAATCTTGCCACACTTGTTCGCCATGTCAATGGCAGGGATGCCAAGGATGTCAAGAGTGCCAAGGATGCCAGGAATGCCAGAGTTGTGGCTGCGAAGTCCACATCAACGACTCTAAAGTTGAACGGGAATCTATTCAAGCAAATGAACCTGAACCACCTATTGTTACAATTGTTCCACCAGTCCAGCCAACAAATCATAACATCAAATCTAATGGGGAAGCAAATCAGGTCATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGACTGTTGCAAAAATTAGTTTACTGGTTGGTCTCTTGGCGTTTGTCTGCTTAAGCCTCTGCTCCGCCCATCGAATTCTCAAGAACAACGATGCTGAAAACCAATTAATAAGTGACAATGTGCCTTCTGGACAAGATAATCACCTACAAAATTCCAGCAATGCTGAGCTGAAAAGTATACCGAAAGGCAGCATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCAATCTTGCCACACTTGTTCGCCATGTCAATGGCAGGGATGCCAAGGATGTCAAGAGTGCCAAGGATGCCAGGAATGCCAGAGTTGTGGCTGCGAAGTCCACATCAACGACTCTAAAGTTGAACGGGAATCTATTCAAGCAAATGAACCTGAACCACCTATTGTTACAATTGTTCCACCAGTCCAGCCAACAAATCATAACATCAAATCTAATGGGGAAGCAAATCAGGTCATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGACTGTTGCAAAAATTAGTTTACTGGTTGGTCTCTTGGCGTTTGTCTGCTTAAGCCTCTGCTCCGCCCATCGAATTCTCAAGAACAACGATGCTGAAAACCAATTAATAAGTGACAATGTGCCTTCTGGACAAGATAATCACCTACAAAATTCCAGCAATGCTGAGCTGAAAAGTATACCGAAAGGCAGCATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCAATCTTGCCACACTTGTTCGCCATGTCAATGGCAGGGATGCCAAGGATGTCAAGAGTGCCAAGGATGCCAGGAATGCCAGAGTTGTGGCTGCGAAGTCCACATCAACGACTCTAAAGTTGAACGGGAATCTATTCAAGCAAATGAACCTGAACCACCTATTGTTACAATTGTTCCACCAGTCCAGCCAACAAATCATAACATCAAATCTAATGGGGAAGCAAATCAGGTCATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSIPKGSIPKFSSVGPTNGDCCNYGNICGCGGYSCCGGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPPIVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV

Homology

[Close]

BLAST of Lsi04G013260 vs. TrEMBL
Match: A0A0A0L3F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 128/212 (60.38%), Postives = 154/212 (72.64%), Query Frame = 1


Query: 1   MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSI 60
           M V + SLLVGLLAF+CLSL SA+RILKNNDAENQLI D+VPSG++NH QNS++ ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGGYSCC---------------- 120
           P  S+ K SS+ P NGDCC+YG  C           GCGG S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPP 180
            GGSS CQSC+TCS CQWQGC GCQECQGCQ CQSCGC+  ++DSKVE++S+Q  EP  P
Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP-AP 180

Query: 181 IVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV 185
           +VTIVPP +PT+++IKS+G +NQ +KSNGGLV
Sbjct: 181 VVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of Lsi04G013260 vs. NCBI nr
Match: gi|700199979|gb|KGN55137.1| (hypothetical protein Csa_4G637770 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 6.3e-59
Identity = 128/212 (60.38%), Postives = 154/212 (72.64%), Query Frame = 1


Query: 1   MTVAKISLLVGLLAFVCLSLCSAHRILKNNDAENQLISDNVPSGQDNHLQNSSNAELKSI 60
           M V + SLLVGLLAF+CLSL SA+RILKNNDAENQLI D+VPSG++NH QNS++ ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGSIPKFSSVGPTNGDCCNYGNIC-----------GCGGYSCC---------------- 120
           P  S+ K SS+ P NGDCC+YG  C           GCGG S C                
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGGCGGCSGCSGGGGGGCSGCSGGGG 120

Query: 121 -GGSSGCQSCHTCSPCQWQGCQGCQECQGCQECQSCGCEVHINDSKVERESIQANEPEPP 180
            GGSS CQSC+TCS CQWQGC GCQECQGCQ CQSCGC+  ++DSKVE++S+Q  EP  P
Sbjct: 121 GGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQSCGCQASMDDSKVEQDSVQTGEP-AP 180

Query: 181 IVTIVPPVQPTNHNIKSNGEANQVMKSNGGLV 185
           +VTIVPP +PT+++IKS+G +NQ +KSNGGLV
Sbjct: 181 VVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

The following BLAST results are available for this feature:

BLAST of Lsi04G013260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G013260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F6_CUCSA	4.4e-59	60.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637770 PE=4 SV=1	[more]

BLAST of Lsi04G013260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G013260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199979\|gb\|KGN55137.1\|	6.3e-59	60.38	hypothetical protein Csa_4G637770 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G013260.1	Lsi04G013260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G013260	Csa4G637770	Cucumber (Chinese Long) v2	culsiB293
Lsi04G013260	CSPI04G23580	Wild cucumber (PI 183967)	cpilsiB293
Lsi04G013260	CmaCh09G008740	Cucurbita maxima (Rimu)	cmalsiB026
Lsi04G013260	CmoCh09G008630	Cucurbita moschata (Rifu)	cmolsiB014
Lsi04G013260	Cla023393	Watermelon (97103) v1	lsiwmB340
Lsi04G013260	ClCG11G018150	Watermelon (Charleston Gray)	lsiwcgB265
Lsi04G013260	Cla97C11G224230	Watermelon (97103) v2	lsiwmbB272
Lsi04G013260	Cp4.1LG06g06910	Cucurbita pepo (Zucchini)	cpelsiB640
Lsi04G013260	CsaV3_4G033800	Cucumber (Chinese Long) v3	cuclsiB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G013260	Cucumber (Chinese Long) v3	cuclsiB056
Lsi04G013260	Watermelon (97103) v2	lsiwmbB278
Lsi04G013260	Wax gourd	lsiwgoB398
Lsi04G013260	Bottle gourd (USVL1VR-Ls)	lsilsiB098
Lsi04G013260	Cucumber (Gy14) v1	cgylsiB187
Lsi04G013260	Cucumber (Gy14) v1	cgylsiB553
Lsi04G013260	Cucurbita maxima (Rimu)	cmalsiB217
Lsi04G013260	Cucurbita maxima (Rimu)	cmalsiB382
Lsi04G013260	Cucurbita maxima (Rimu)	cmalsiB426
Lsi04G013260	Cucurbita moschata (Rifu)	cmolsiB205
Lsi04G013260	Cucurbita moschata (Rifu)	cmolsiB367
Lsi04G013260	Cucurbita moschata (Rifu)	cmolsiB414
Lsi04G013260	Cucurbita pepo (Zucchini)	cpelsiB034
Lsi04G013260	Cucurbita pepo (Zucchini)	cpelsiB464
Lsi04G013260	Wild cucumber (PI 183967)	cpilsiB051
Lsi04G013260	Cucumber (Chinese Long) v2	culsiB050
Lsi04G013260	Melon (DHL92) v3.5.1	lsimeB290
Lsi04G013260	Melon (DHL92) v3.5.1	lsimeB317
Lsi04G013260	Watermelon (Charleston Gray)	lsiwcgB277
Lsi04G013260	Watermelon (97103) v1	lsiwmB299
Lsi04G013260	Cucumber (Gy14) v2	cgyblsiB046
Lsi04G013260	Cucumber (Gy14) v2	cgyblsiB271
Lsi04G013260	Melon (DHL92) v3.6.1	lsimedB304
Lsi04G013260	Melon (DHL92) v3.6.1	lsimedB333
Lsi04G013260	Silver-seed gourd	carlsiB154
Lsi04G013260	Silver-seed gourd	carlsiB284