Cla97C11G224230 (gene) Watermelon (97103) v2

Overview
NameCla97C11G224230
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr11 : 29954378 .. 29954935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

mRNA sequence

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Coding sequence (CDS)

ATGGCTGTTACAAAAATTAGTTTTCTGGTTGGTCTCTTGGCATTTCTCTGCTTAAGCCTCGGCTCCGCCCATCGAGTTCTCAAGAACAACCATTCTGAAAACCAATTAATAAGTGACAGTGTGTCTTCTGGACAAGATAATCACCTACAAAATTCCAGCCATGCTGAGTTGAAAAGTATACCAAAAGGCAACATACCAAAATTCAGTTCTGTTGGTCCAACAAATGGTGATTGTTGCAACTATGGCAACATCTGTGGAGGATATTCATGTTGTGGTGGAAGCTCTGGTTGCCCATCTTGCTACACTTGTTCGCCATGTCAATGGCAGGAATGCCAGGGATGCCAGGGATGTCAAGAGTGTCAGGAGTGTCAAGGATGCCAGAGTTGTGGCTGTCAAGTCCGCATGAACAACTCTAAGGTCAAACAGGAATCTATTCAAGCAAGTGAACCTGAACCGCCTATTGTTACAATTGTTCCACCAGTCCAGCCAGCAGATCATAACATAAAATCTAGTGGGGAAGCAAATCAGGACATGAAATCCAATGGCGGTCTGGTTTAG

Protein sequence

MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSIPKGNIPKFSSVGPTNGDCCNYGNICGGYSCCGGSSGCPSCYTCSPCQWQECQGCQGCQECQECQGCQSCGCQVRMNNSKVKQESIQASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV
Homology
[Close]
BLAST of Cla97C11G224230 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_4G637770 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 135/212 (63.68%), Postives = 158/212 (74.53%), Query Frame = 0 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICGGY---SC-CG-----------------------G 120
           P  ++ K SS+ P NGDCC+YG  CG Y   +C CG                        
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQVRMNNSKVKQESIQASEPEPP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQ  M++SKV+Q+S+Q  EP  P
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQASMDDSKVEQDSVQTGEP-AP 180

Query: 181 IVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
           +VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 VVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]
BLAST of Cla97C11G224230 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.2 bits (282), Expect = 9.3e-22
Identity = 114/233 (48.93%), Postives = 134/233 (57.51%), Query Frame = 0 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVTK SFLVGLLAFLCLSL SA+RVLKNN +E +L+S++VSS QDN LQ+ ++AELKSI
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKSI 60

Query: 61  PKGNIPKFSSVGP----------------------------------------------- 120
           P+GN+PK SSVG                                                
Sbjct: 61  PEGNVPKLSSVGSGYXXXXXXXXXXXXXXXTYXXXXXXXXXXXXXXXXXXXXXXGCQPCY 120

Query: 121 TNGDCCNYGNICGGYSCCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQV 180
           T   C   G  C G+  C G   XXXXXXXXXXXXXXXXXXXXXXXX             
Sbjct: 121 TYSPCPWQG--CPGFQGCQGCQGXXXXXXXXXXXXXXXXXXXXXXXXPCTFEVG------ 180

Query: 181 RMNNSKVKQESI-QASEPEPPIVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
            +N+SK++ ESI    EPEPP++       P +H+IKSSG ANQDMKSNGGLV
Sbjct: 181 TVNDSKIQDESIPMGEEPEPPVL-------PENHHIKSSGGANQDMKSNGGLV 218

[Close]
BLAST of Cla97C11G224230 vs. TrEMBL
Match: tr|A0A0A0L3F6|A0A0A0L3F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 135/212 (63.68%), Postives = 158/212 (74.53%), Query Frame = 0 

Query: 1   MAVTKISFLVGLLAFLCLSLGSAHRVLKNNHSENQLISDSVSSGQDNHLQNSSHAELKSI 60
           MAVT+ S LVGLLAFLCLSLGSA+R+LKNN +ENQLI D V SG++NH QNS+H ELKSI
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKSI 60

Query: 61  PKGNIPKFSSVGPTNGDCCNYGNICGGY---SC-CG-----------------------G 120
           P  ++ K SS+ P NGDCC+YG  CG Y   +C CG                        
Sbjct: 61  PTDSMAKISSINPINGDCCSYGTNCGIYPPPTCGCGXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQVRMNNSKVKQESIQASEPEPP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQ  M++SKV+Q+S+Q  EP  P
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCQASMDDSKVEQDSVQTGEP-AP 180

Query: 181 IVTIVPPVQPADHNIKSSGEANQDMKSNGGLV 186
           +VTIVPP +P D++IKSSG +NQD+KSNGGLV
Sbjct: 181 VVTIVPPAKPTDNDIKSSGGSNQDIKSNGGLV 211

The following BLAST results are available for this feature:
BLAST of Cla97C11G224230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55137.11.9e-3563.68hypothetical protein Csa_4G637770 [Cucumis sativus][more]
XP_023535133.19.3e-2248.93mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C11G224230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3F6|A0A0A0L3F6_CUCSA1.3e-3563.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1[more]
BLAST of Cla97C11G224230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C11G224230 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G224230.1Cla97C11G224230.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..185

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C11G224230Cla023393Watermelon (97103) v1wmwmbB358
Cla97C11G224230Csa4G637770Cucumber (Chinese Long) v2cuwmbB279
Cla97C11G224230ClCG11G018150Watermelon (Charleston Gray)wcgwmbB064
Cla97C11G224230CSPI04G23580Wild cucumber (PI 183967)cpiwmbB286
Cla97C11G224230CmaCh09G008740Cucurbita maxima (Rimu)cmawmbB020
Cla97C11G224230Lsi04G013260Bottle gourd (USVL1VR-Ls)lsiwmbB272
Cla97C11G224230CsaV3_4G033800Cucumber (Chinese Long) v3cucwmbB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C11G224230Watermelon (97103) v2wmbwmbB006
Cla97C11G224230Watermelon (97103) v2wmbwmbB068
Cla97C11G224230Silver-seed gourdcarwmbB0155
Cla97C11G224230Silver-seed gourdcarwmbB0175
Cla97C11G224230Silver-seed gourdcarwmbB0998
Cla97C11G224230Silver-seed gourdcarwmbB0321
Cla97C11G224230Cucumber (Gy14) v2cgybwmbB024
Cla97C11G224230Cucumber (Gy14) v2cgybwmbB265
Cla97C11G224230Cucumber (Gy14) v2cgybwmbB405
Cla97C11G224230Cucumber (Gy14) v1cgywmbB020
Cla97C11G224230Cucumber (Gy14) v1cgywmbB189
Cla97C11G224230Cucumber (Gy14) v1cgywmbB199
Cla97C11G224230Cucumber (Gy14) v1cgywmbB583
Cla97C11G224230Cucurbita maxima (Rimu)cmawmbB219
Cla97C11G224230Cucurbita maxima (Rimu)cmawmbB410
Cla97C11G224230Cucurbita maxima (Rimu)cmawmbB454
Cla97C11G224230Cucurbita maxima (Rimu)cmawmbB880
Cla97C11G224230Cucurbita moschata (Rifu)cmowmbB008
Cla97C11G224230Cucurbita moschata (Rifu)cmowmbB203
Cla97C11G224230Cucurbita moschata (Rifu)cmowmbB393
Cla97C11G224230Cucurbita moschata (Rifu)cmowmbB436
Cla97C11G224230Wild cucumber (PI 183967)cpiwmbB023
Cla97C11G224230Wild cucumber (PI 183967)cpiwmbB197
Cla97C11G224230Wild cucumber (PI 183967)cpiwmbB449
Cla97C11G224230Cucumber (Chinese Long) v3cucwmbB022
Cla97C11G224230Cucumber (Chinese Long) v3cucwmbB443
Cla97C11G224230Cucumber (Chinese Long) v2cuwmbB023
Cla97C11G224230Cucumber (Chinese Long) v2cuwmbB193
Cla97C11G224230Cucumber (Chinese Long) v2cuwmbB425
Cla97C11G224230Bottle gourd (USVL1VR-Ls)lsiwmbB121
Cla97C11G224230Bottle gourd (USVL1VR-Ls)lsiwmbB169
Cla97C11G224230Melon (DHL92) v3.6.1medwmbB137
Cla97C11G224230Melon (DHL92) v3.6.1medwmbB467
Cla97C11G224230Melon (DHL92) v3.6.1medwmbB515
Cla97C11G224230Melon (DHL92) v3.5.1mewmbB149
Cla97C11G224230Melon (DHL92) v3.5.1mewmbB474
Cla97C11G224230Melon (DHL92) v3.5.1mewmbB523
Cla97C11G224230Watermelon (Charleston Gray)wcgwmbB098
Cla97C11G224230Watermelon (Charleston Gray)wcgwmbB179
Cla97C11G224230Watermelon (97103) v1wmwmbB117
Cla97C11G224230Watermelon (97103) v1wmwmbB256
Cla97C11G224230Wax gourdwgowmbB413
Cla97C11G224230Wax gourdwgowmbB560