ClCG08G016640 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTAAGTTTCAAAAATCTCCCTTCAAAACTAATCCCCAATTTATCCATTATAGTTAATTTCATCCTTAATATCTCTTTAACTAGGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCT GTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCT ATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGA MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRRTLEAHIDYIYTSDQMKP
BLAST of ClCG08G016640 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06 Identity = 34/82 (41.46%), Postives = 43/82 (52.44%), Query Frame = 1
BLAST of ClCG08G016640 vs. Swiss-Prot
Match: PSK4_ARATH (Putative phytosulfokines 4 OS=Arabidopsis thaliana GN=PSK4 PE=3 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A0A0LR23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12 Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A068TMX2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014604001 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06 Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
BLAST of ClCG08G016640 vs. TrEMBL
Match: M5XJI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06 Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 1
BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A072VEZ2_MEDTR (Phytosulfokine protein OS=Medicago truncatula GN=MTR_1g017700 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.8e-06 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
BLAST of ClCG08G016640 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor) HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
BLAST of ClCG08G016640 vs. TAIR10
Match: AT2G22860.1 (AT2G22860.1 phytosulfokine 2 precursor) HSP 1 Score: 46.6 bits (109), Expect = 8.9e-06 Identity = 33/92 (35.87%), Postives = 42/92 (45.65%), Query Frame = 1
BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|700207312|gb|KGN62431.1| (hypothetical protein Csa_2G354080 [Cucumis sativus]) HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12 Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|698458758|ref|XP_009781130.1| (PREDICTED: phytosulfokines-like [Nicotiana sylvestris]) HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08 Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|719971185|ref|XP_010273404.1| (PREDICTED: phytosulfokines [Nelumbo nucifera]) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07 Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|697157542|ref|XP_009587526.1| (PREDICTED: phytosulfokines 3 [Nicotiana tomentosiformis]) HSP 1 Score: 61.2 bits (147), Expect = 9.9e-07 Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|698513121|ref|XP_009801526.1| (PREDICTED: phytosulfokines 3-like [Nicotiana sylvestris]) HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06 Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |