ClCG08G016640 (gene) Watermelon (Charleston Gray)

NameClCG08G016640
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPhytosulfokines, putative
LocationCG_Chr08 : 28950576 .. 28951119 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTAAGTTTCAAAAATCTCCCTTCAAAACTAATCCCCAATTTATCCATTATAGTTAATTTCATCCTTAATATCTCTTTAACTAGGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCT

mRNA sequence

GTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCCTCCTTCCTCCACTCAAATTCAAATCCCAAAATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGAATTACTCCTCTGCAAAAATGGGGAAAATTATATTTTCTCTGATCATTAATTACAGTTTCATAATTAAATAAAATAAATCAGGTCGCTGGACTTATTCTTCT

Coding sequence (CDS)

ATGTCGAAGCTCCCAGCTCTGTTCGCCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTTCCCTCCTCCGAAGCTCGTCCCATCGCTACCTTCTCCGCCATTTCCCTCAAACCCACAAATCCAGTTGCTTCTCAAGAGGCTATTACTCATAACGACGGATCATGTGAAGGACGGGACAAAGAAGATTGCCTGATTAGAAGAACATTAGAGGCTCATATTGATTACATCTATACCAGTGATCAAATGAAGCCATGA

Protein sequence

MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRRTLEAHIDYIYTSDQMKP
BLAST of ClCG08G016640 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 34/82 (41.46%), Postives = 43/82 (52.44%), Query Frame = 1

Query: 2  SKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITH--NDGSCEGR 61
          SK   L  IA L ++SL    +  ARP        L+P +   S   I    +D +CEG 
Sbjct: 3  SKAITLLLIALLFSLSL----AQAARP--------LQPADSTKSVHVIPEKVHDEACEGV 62

Query: 62 DKEDCLIRRTLEAHIDYIYTSD 82
           +E+CL+RRTL AH+DYIYT D
Sbjct: 63 GEEECLMRRTLTAHVDYIYTQD 72

BLAST of ClCG08G016640 vs. Swiss-Prot
Match: PSK4_ARATH (Putative phytosulfokines 4 OS=Arabidopsis thaliana GN=PSK4 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPI-ATFSAISLKPTNPVASQ--EAITHNDG--S 60
          M+ L  L  IA L+  +++   +  ARP  A F++ +  P + ++ +  E+  H     S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CEGRDKEDCLIRRTLEAHIDYIYT 80
          C+  D EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A0A0LR23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 1

Query: 10 IAALVT-MSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRR 69
          IAAL T MSLII+PSSE RPI +F  I    TN         +NDGSCEG  KEDCLIRR
Sbjct: 12 IAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCEGSGKEDCLIRR 71

Query: 70 TLEAHIDYIYTSD 82
          TL+AH DY+YT D
Sbjct: 72 TLQAHTDYVYTCD 76

BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A068TMX2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014604001 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNP---VASQEAITHNDGSCE 60
          MSK+  L  ++ L+ ++L     + ARP+ATF  ++   T+    V  +      + SCE
Sbjct: 1  MSKVSTLCIVSLLLFLTLSY---AVARPVATFQDVTPMETHHGHRVNDRVEKVDKEESCE 60

Query: 61 GRDKEDCLIRRTLEAHIDYIYTSDQMKP 86
          G  +++CL+RRTLEAH+DYIYT  Q +P
Sbjct: 61 GLGEDECLMRRTLEAHLDYIYTQGQKQP 85

BLAST of ClCG08G016640 vs. TrEMBL
Match: M5XJI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 1

Query: 1  MSKL-PALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDG---SC 60
          M+KL   LF IA L++  L    S  ARP   F+  +LK        EAI   DG   SC
Sbjct: 1  MAKLITTLFTIALLLSFQL----SLAARPDPAFTNAALKTQQQDKEAEAIAVEDGGEISC 60

Query: 61 EGRDKEDCLIRRTLEAHIDYIYT 80
           G + E+CL+RRTL AH+DYIYT
Sbjct: 61 AGLEMEECLMRRTLAAHVDYIYT 79

BLAST of ClCG08G016640 vs. TrEMBL
Match: A0A072VEZ2_MEDTR (Phytosulfokine protein OS=Medicago truncatula GN=MTR_1g017700 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-06
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQ-EAITHNDGSCEGR 60
          MSKL  LF +A L+++SL    +S +RP   F  +S    + V+S+  ++   D +CEG 
Sbjct: 1  MSKLVTLFTLALLLSLSL----TSASRPNFVFKGVSSLHEDIVSSKASSVDLEDENCEGV 60

Query: 61 DKE-DCLIRRTLEAHIDYIYTSDQMK 85
          + E +CL RRTL AH+DYIYT  + K
Sbjct: 61 EGEQECLTRRTLAAHLDYIYTQHKPK 82

BLAST of ClCG08G016640 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPI-ATFSAISLKPTNPVASQ--EAITHNDG--S 60
          M+ L  L  IA L+  +++   +  ARP  A F++ +  P + ++ +  E+  H     S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CEGRDKEDCLIRRTLEAHIDYIYT 80
          C+  D EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

BLAST of ClCG08G016640 vs. TAIR10
Match: AT2G22860.1 (AT2G22860.1 phytosulfokine 2 precursor)

HSP 1 Score: 46.6 bits (109), Expect = 8.9e-06
Identity = 33/92 (35.87%), Postives = 42/92 (45.65%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHN-------D 60
          M+ + AL  IA L+  +L+      ARP    S       +P   ++ I          D
Sbjct: 1  MANVSALLTIALLLCSTLMCT----ARPEPAISISITTAADPCNMEKKIEGKLDDMHMVD 60

Query: 61 GSCEGRDKEDCLIRRTLEAHIDYIYTSDQMKP 86
           +C G D EDCL+RRTL AH DYIYT  +  P
Sbjct: 61 ENC-GADDEDCLMRRTLVAHTDYIYTQKKKHP 87

BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|700207312|gb|KGN62431.1| (hypothetical protein Csa_2G354080 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 1

Query: 10 IAALVT-MSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRDKEDCLIRR 69
          IAAL T MSLII+PSSE RPI +F  I    TN         +NDGSCEG  KEDCLIRR
Sbjct: 12 IAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCEGSGKEDCLIRR 71

Query: 70 TLEAHIDYIYTSD 82
          TL+AH DY+YT D
Sbjct: 72 TLQAHTDYVYTCD 76

BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|698458758|ref|XP_009781130.1| (PREDICTED: phytosulfokines-like [Nicotiana sylvestris])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSK  ALF +A L+  SL     S ARP +T      K     A  + + +++G CEG +
Sbjct: 1  MSKFSALFLVAILLCFSL----KSAARPDSTLMKAQFKD----ARDDKVENDEGICEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +EDCL RRT+EAHIDYIYT  +  P
Sbjct: 61 EEDCLKRRTMEAHIDYIYTQSKGHP 77

BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|719971185|ref|XP_010273404.1| (PREDICTED: phytosulfokines [Nelumbo nucifera])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSK  ALF +A L+ +SL    +  ARP  T    S+  T P    +A  H D +C+G  
Sbjct: 1  MSKATALFVVALLLFVSL----TQAARPEPTLPNDSVVNTQP--GDDADVHVDVTCDGIG 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +++CL+RRTL AH DYIYT D  +P
Sbjct: 61 EDECLMRRTLTAHTDYIYTQDNGRP 79

BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|697157542|ref|XP_009587526.1| (PREDICTED: phytosulfokines 3 [Nicotiana tomentosiformis])

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-07
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSKL  LF +A LV  +L       ARP    S+  +KP   VAS+  I   +  CEG +
Sbjct: 1  MSKLCTLFIVAFLVCFTLTFA----ARPD---SSAVVKPQFHVASEGKIEIKEAKCEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +E+CL RRT+ AH+DYIYT     P
Sbjct: 61 EEECLKRRTMAAHLDYIYTQSNKNP 78

BLAST of ClCG08G016640 vs. NCBI nr
Match: gi|698513121|ref|XP_009801526.1| (PREDICTED: phytosulfokines 3-like [Nicotiana sylvestris])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1

Query: 1  MSKLPALFAIAALVTMSLIILPSSEARPIATFSAISLKPTNPVASQEAITHNDGSCEGRD 60
          MSKL  LF +A LV  +L       ARP    S+  +KP   +AS+  I   +  CEG +
Sbjct: 1  MSKLCTLFIVAFLVCFTLTFA----ARPD---SSAVVKPQFHIASEGKIQIKEAKCEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQMKP 86
          +E+CL RRT+ AH+DYIYT     P
Sbjct: 61 EEECLKRRTMAAHLDYIYTQSNKNP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSK_ASPOF1.7e-0641.46Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1[more]
PSK4_ARATH6.4e-0638.10Putative phytosulfokines 4 OS=Arabidopsis thaliana GN=PSK4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LR23_CUCSA1.1e-1261.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1[more]
A0A068TMX2_COFCA1.2e-0638.64Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014604001 PE=4 SV=1[more]
M5XJI1_PRUPE3.4e-0645.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1[more]
A0A072VEZ2_MEDTR5.8e-0641.86Phytosulfokine protein OS=Medicago truncatula GN=MTR_1g017700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G37720.13.6e-0738.10 phytosulfokine 6 precursor[more]
AT2G22860.18.9e-0635.87 phytosulfokine 2 precursor[more]
Match NameE-valueIdentityDescription
gi|700207312|gb|KGN62431.1|1.6e-1261.64hypothetical protein Csa_2G354080 [Cucumis sativus][more]
gi|698458758|ref|XP_009781130.1|1.4e-0844.71PREDICTED: phytosulfokines-like [Nicotiana sylvestris][more]
gi|719971185|ref|XP_010273404.1|1.5e-0743.53PREDICTED: phytosulfokines [Nelumbo nucifera][more]
gi|697157542|ref|XP_009587526.1|9.9e-0743.53PREDICTED: phytosulfokines 3 [Nicotiana tomentosiformis][more]
gi|698513121|ref|XP_009801526.1|1.3e-0642.35PREDICTED: phytosulfokines 3-like [Nicotiana sylvestris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009438Phytosulfokine
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Biological Process
TermDefinition
GO:0008283cell proliferation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
biological_process GO:0010469 regulation of receptor activity
cellular_component GO:0005576 extracellular region
molecular_function GO:0008083 growth factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G016640.1ClCG08G016640.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 46..82
score: 1.3
NoneNo IPR availablePANTHERPTHR33285FAMILY NOT NAMEDcoord: 1..85
score: 2.8
NoneNo IPR availablePANTHERPTHR33285:SF1GROWTH FACTOR PROTEIN-RELATEDcoord: 1..85
score: 2.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G016640Watermelon (Charleston Gray)wcgwcgB112
ClCG08G016640Watermelon (Charleston Gray)wcgwcgB166
ClCG08G016640Cucumber (Gy14) v1cgywcgB138
ClCG08G016640Cucumber (Gy14) v1cgywcgB399
ClCG08G016640Cucumber (Gy14) v1cgywcgB603
ClCG08G016640Cucumber (Gy14) v1cgywcgB674
ClCG08G016640Cucurbita maxima (Rimu)cmawcgB029
ClCG08G016640Cucurbita maxima (Rimu)cmawcgB434
ClCG08G016640Cucurbita maxima (Rimu)cmawcgB603
ClCG08G016640Cucurbita maxima (Rimu)cmawcgB776
ClCG08G016640Cucurbita moschata (Rifu)cmowcgB023
ClCG08G016640Cucurbita moschata (Rifu)cmowcgB161
ClCG08G016640Cucurbita moschata (Rifu)cmowcgB435
ClCG08G016640Cucurbita moschata (Rifu)cmowcgB602
ClCG08G016640Cucurbita moschata (Rifu)cmowcgB777
ClCG08G016640Wild cucumber (PI 183967)cpiwcgB172
ClCG08G016640Wild cucumber (PI 183967)cpiwcgB350
ClCG08G016640Wild cucumber (PI 183967)cpiwcgB529
ClCG08G016640Wild cucumber (PI 183967)cpiwcgB599
ClCG08G016640Cucumber (Chinese Long) v2cuwcgB332
ClCG08G016640Cucumber (Chinese Long) v2cuwcgB503
ClCG08G016640Cucumber (Chinese Long) v2cuwcgB568
ClCG08G016640Melon (DHL92) v3.5.1mewcgB295
ClCG08G016640Melon (DHL92) v3.5.1mewcgB223
ClCG08G016640Melon (DHL92) v3.5.1mewcgB502
ClCG08G016640Melon (DHL92) v3.5.1mewcgB544
ClCG08G016640Watermelon (97103) v1wcgwmB412
ClCG08G016640Watermelon (97103) v1wcgwmB418
ClCG08G016640Cucurbita pepo (Zucchini)cpewcgB086
ClCG08G016640Cucurbita pepo (Zucchini)cpewcgB446
ClCG08G016640Cucurbita pepo (Zucchini)cpewcgB528
ClCG08G016640Cucurbita pepo (Zucchini)cpewcgB708
ClCG08G016640Bottle gourd (USVL1VR-Ls)lsiwcgB153
ClCG08G016640Bottle gourd (USVL1VR-Ls)lsiwcgB305
ClCG08G016640Cucumber (Gy14) v2cgybwcgB309
ClCG08G016640Cucumber (Gy14) v2cgybwcgB461
ClCG08G016640Cucumber (Gy14) v2cgybwcgB529
ClCG08G016640Melon (DHL92) v3.6.1medwcgB496
ClCG08G016640Melon (DHL92) v3.6.1medwcgB542
ClCG08G016640Silver-seed gourdcarwcgB0003
ClCG08G016640Silver-seed gourdcarwcgB0315
ClCG08G016640Silver-seed gourdcarwcgB0403
ClCG08G016640Silver-seed gourdcarwcgB0446
ClCG08G016640Silver-seed gourdcarwcgB0752
ClCG08G016640Cucumber (Chinese Long) v3cucwcgB350
ClCG08G016640Cucumber (Chinese Long) v3cucwcgB521
ClCG08G016640Cucumber (Chinese Long) v3cucwcgB601
ClCG08G016640Watermelon (97103) v2wcgwmbB314
ClCG08G016640Watermelon (97103) v2wcgwmbB327
ClCG08G016640Wax gourdwcgwgoB640
ClCG08G016640Wax gourdwcgwgoB656