Lsi08G015410 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G015410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhytosulfokines, putative
Locationchr08 : 23438615 .. 23439560 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGAAAAAAAACCATAAACAGCGTATAGGGTGTGGCCAACGTTGAAAACAGTATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCTTCTTCACCCACTCTTCATTGCAAATCAAAATTCCAAACAAATTCAAATCACAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTAAGTTCCCAAAATCTCCCTTCAAAACTAATTTTCCCAATTTAATCCATTTTCAATTATTCTTTAATTAATTTCATGCGTAATAATATCTCTTTAATTAGGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGAACTACTGCTCTGCAAAAATAGGGAAATTTATATTTTCTCTGATCATTAATTACAGTTTCATTATTAAATAAAGTAAATCAGTTCGCTGGAGTTTTCATTCTTCTTCTTCTGTTTGTTTTTCGGTTCGGCGATTTACGAACGAACAGACTGCCGGGCCGGTTCGTGGTCCTGACAGGCCACAGTTTCTATAACGAGACTGAGTTAGGAATTGAAGCGGTTTAACATCAAATCAAATTGGTTATTTTGGGATATATTTTCTCTTTTTGGCGATAACTATTCTTTACCTGAACTTATTTTCAACCACTCACATGCCATGTACATGCTGTTTGAAGAAAATTACCATTTTTTTCTTTTTTGTTGAGTACAAAGAAAATTAATTATTAC

mRNA sequence

AAAGGAAAAAAAACCATAAACAGCGTATAGGGTGTGGCCAACGTTGAAAACAGTATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCTTCTTCACCCACTCTTCATTGCAAATCAAAATTCCAAACAAATTCAAATCACAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGAACTACTGCTCTGCAAAAATAGGGAAATTTATATTTTCTCTGATCATTAATTACAGTTTCATTATTAAATAAAGTAAATCAGTTCGCTGGAGTTTTCATTCTTCTTCTTCTGTTTGTTTTTCGGTTCGGCGATTTACGAACGAACAGACTGCCGGGCCGGTTCGTGGTCCTGACAGGCCACAGTTTCTATAACGAGACTGAGTTAGGAATTGAAGCGGTTTAACATCAAATCAAATTGGTTATTTTGGGATATATTTTCTCTTTTTGGCGATAACTATTCTTTACCTGAACTTATTTTCAACCACTCACATGCCATGTACATGCTGTTTGAAGAAAATTACCATTTTTTTCTTTTTTGTTGAGTACAAAGAAAATTAATTATTAC

Coding sequence (CDS)

ATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGA

Protein sequence

MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQEKEDCLIRRTLEAHIDYIYTSDQTKP
BLAST of Lsi08G015410 vs. TrEMBL
Match: A0A0A0LR23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1

Query: 1  MSK-LAALFT-IAALVT-MSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCD 60
          MSK LA+L T IAAL T MSLII+PSSE RP+ +F  I     N         +NDGSC+
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCE 60

Query: 61 GQEKEDCLIRRTLEAHIDYIYTSDQ-TKP 86
          G  KEDCLIRRTL+AH DY+YT D  TKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

BLAST of Lsi08G015410 vs. TrEMBL
Match: M5XJI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1

Query: 1  MSKL-AALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDG---SC 60
          M+KL   LFTIA L++  L    S  ARP   FT  +LK        E IA  DG   SC
Sbjct: 1  MAKLITTLFTIALLLSFQL----SLAARPDPAFTNAALKTQQQDKEAEAIAVEDGGEISC 60

Query: 61 DGQEKEDCLIRRTLEAHIDYIYT 80
           G E E+CL+RRTL AH+DYIYT
Sbjct: 61 AGLEMEECLMRRTLAAHVDYIYT 79

BLAST of Lsi08G015410 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1

Query: 1  MSKLAALFTIAALVTMSLIILPSSEARP----VATFTTISLKPNNPVVSQETIAHNDG-S 60
          M+ L+ L TIA L+  +++   +  ARP     A+FTT      +  + +  +    G S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CDGQEKEDCLIRRTLEAHIDYIYT 80
          CD ++ EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

BLAST of Lsi08G015410 vs. NCBI nr
Match: gi|700207312|gb|KGN62431.1| (hypothetical protein Csa_2G354080 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1

Query: 1  MSK-LAALFT-IAALVT-MSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCD 60
          MSK LA+L T IAAL T MSLII+PSSE RP+ +F  I     N         +NDGSC+
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCE 60

Query: 61 GQEKEDCLIRRTLEAHIDYIYTSDQ-TKP 86
          G  KEDCLIRRTL+AH DY+YT D  TKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

BLAST of Lsi08G015410 vs. NCBI nr
Match: gi|698458758|ref|XP_009781130.1| (PREDICTED: phytosulfokines-like [Nicotiana sylvestris])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 1  MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQE 60
          MSK +ALF +A L+  SL     S ARP +T      K        + + +++G C+G E
Sbjct: 1  MSKFSALFLVAILLCFSL----KSAARPDSTLMKAQFKD----ARDDKVENDEGICEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQTKP 86
          +EDCL RRT+EAHIDYIYT  +  P
Sbjct: 61 EEDCLKRRTMEAHIDYIYTQSKGHP 77

BLAST of Lsi08G015410 vs. NCBI nr
Match: gi|596258640|ref|XP_007224875.1| (hypothetical protein PRUPE_ppa022582mg [Prunus persica])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1

Query: 1  MSKL-AALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDG---SC 60
          M+KL   LFTIA L++  L    S  ARP   FT  +LK        E IA  DG   SC
Sbjct: 1  MAKLITTLFTIALLLSFQL----SLAARPDPAFTNAALKTQQQDKEAEAIAVEDGGEISC 60

Query: 61 DGQEKEDCLIRRTLEAHIDYIYT 80
           G E E+CL+RRTL AH+DYIYT
Sbjct: 61 AGLEMEECLMRRTLAAHVDYIYT 79

BLAST of Lsi08G015410 vs. NCBI nr
Match: gi|1009154663|ref|XP_015895296.1| (PREDICTED: phytosulfokines 3-like [Ziziphus jujuba])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 18 LIILPSSEARPVA-TFTTISLKPNNP-VVSQETIAHNDGSCDGQEKEDCLIRRTLEAHID 77
          L++L  +E RP+  T    S  PN P  +S E     DG C G E E+CLIRR++ AH D
Sbjct: 12 LLLLSCAETRPIPNTILQESAYPNIPNALSPEEAIMEDGGCKGLENEECLIRRSMAAHTD 71

Query: 78 YIYTSDQTKP 86
          YIYT D T P
Sbjct: 72 YIYTQDITGP 81

BLAST of Lsi08G015410 vs. NCBI nr
Match: gi|719971185|ref|XP_010273404.1| (PREDICTED: phytosulfokines [Nelumbo nucifera])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1

Query: 1  MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQE 60
          MSK  ALF +A L+ +SL    +  ARP  T    S+    P    +   H D +CDG  
Sbjct: 1  MSKATALFVVALLLFVSL----TQAARPEPTLPNDSVVNTQP--GDDADVHVDVTCDGIG 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQTKP 86
          +++CL+RRTL AH DYIYT D  +P
Sbjct: 61 EDECLMRRTLTAHTDYIYTQDNGRP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LR23_CUCSA2.1e-1158.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1[more]
M5XJI1_PRUPE1.2e-0649.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G37720.11.8e-0639.29 phytosulfokine 6 precursor[more]
Match NameE-valueIdentityDescription
gi|700207312|gb|KGN62431.1|3.0e-1158.43hypothetical protein Csa_2G354080 [Cucumis sativus][more]
gi|698458758|ref|XP_009781130.1|1.2e-0743.53PREDICTED: phytosulfokines-like [Nicotiana sylvestris][more]
gi|596258640|ref|XP_007224875.1|1.7e-0649.40hypothetical protein PRUPE_ppa022582mg [Prunus persica][more]
gi|1009154663|ref|XP_015895296.1|2.2e-0647.14PREDICTED: phytosulfokines 3-like [Ziziphus jujuba][more]
gi|719971185|ref|XP_010273404.1|2.9e-0642.35PREDICTED: phytosulfokines [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008283cell proliferation
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: INTERPRO
TermDefinition
IPR009438Phytosulfokine
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
biological_process GO:0010469 regulation of receptor activity
cellular_component GO:0005576 extracellular region
molecular_function GO:0008083 growth factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015410.1Lsi08G015410.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 45..83
score: 1.6
NoneNo IPR availablePANTHERPTHR33285FAMILY NOT NAMEDcoord: 1..85
score: 2.3
NoneNo IPR availablePANTHERPTHR33285:SF1GROWTH FACTOR PROTEIN-RELATEDcoord: 1..85
score: 2.3

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G015410Watermelon (97103) v1lsiwmB488
Lsi08G015410Cucumber (Gy14) v2cgyblsiB289
Lsi08G015410Cucumber (Gy14) v2cgyblsiB441
Lsi08G015410Cucumber (Gy14) v2cgyblsiB505
Lsi08G015410Melon (DHL92) v3.6.1lsimedB507
Lsi08G015410Melon (DHL92) v3.6.1lsimedB509
Lsi08G015410Silver-seed gourdcarlsiB003
Lsi08G015410Silver-seed gourdcarlsiB295
Lsi08G015410Silver-seed gourdcarlsiB372
Lsi08G015410Silver-seed gourdcarlsiB415
Lsi08G015410Silver-seed gourdcarlsiB710
Lsi08G015410Cucumber (Chinese Long) v3cuclsiB336
Lsi08G015410Cucumber (Chinese Long) v3cuclsiB504
Lsi08G015410Cucumber (Chinese Long) v3cuclsiB573
Lsi08G015410Watermelon (97103) v2lsiwmbB422
Lsi08G015410Watermelon (97103) v2lsiwmbB435
Lsi08G015410Wax gourdlsiwgoB613
Lsi08G015410Wax gourdlsiwgoB627
Lsi08G015410Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi08G015410Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi08G015410Cucumber (Gy14) v1cgylsiB129
Lsi08G015410Cucumber (Gy14) v1cgylsiB370
Lsi08G015410Cucumber (Gy14) v1cgylsiB571
Lsi08G015410Cucumber (Gy14) v1cgylsiB637
Lsi08G015410Cucurbita maxima (Rimu)cmalsiB032
Lsi08G015410Cucurbita maxima (Rimu)cmalsiB456
Lsi08G015410Cucurbita maxima (Rimu)cmalsiB621
Lsi08G015410Cucurbita maxima (Rimu)cmalsiB809
Lsi08G015410Cucurbita moschata (Rifu)cmolsiB020
Lsi08G015410Cucurbita moschata (Rifu)cmolsiB175
Lsi08G015410Cucurbita moschata (Rifu)cmolsiB442
Lsi08G015410Cucurbita moschata (Rifu)cmolsiB609
Lsi08G015410Cucurbita moschata (Rifu)cmolsiB795
Lsi08G015410Cucurbita pepo (Zucchini)cpelsiB067
Lsi08G015410Cucurbita pepo (Zucchini)cpelsiB409
Lsi08G015410Cucurbita pepo (Zucchini)cpelsiB477
Lsi08G015410Cucurbita pepo (Zucchini)cpelsiB644
Lsi08G015410Wild cucumber (PI 183967)cpilsiB141
Lsi08G015410Wild cucumber (PI 183967)cpilsiB316
Lsi08G015410Wild cucumber (PI 183967)cpilsiB482
Lsi08G015410Wild cucumber (PI 183967)cpilsiB550
Lsi08G015410Cucumber (Chinese Long) v2culsiB317
Lsi08G015410Cucumber (Chinese Long) v2culsiB474
Lsi08G015410Cucumber (Chinese Long) v2culsiB535
Lsi08G015410Melon (DHL92) v3.5.1lsimeB466
Lsi08G015410Melon (DHL92) v3.5.1lsimeB469
Lsi08G015410Melon (DHL92) v3.5.1lsimeB488
Lsi08G015410Melon (DHL92) v3.5.1lsimeB490
Lsi08G015410Watermelon (Charleston Gray)lsiwcgB425