CmaCh12G006060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G006060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhytosulfokines 3 family protein
LocationCma_Chr12 : 3187104 .. 3187554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAGTTCATAGCTCTCTTCTCCATTGTAGCGCTCGTGACAATGTCTCTTTTCTCCGCCTCCGAAGCTCGTCCCATCGCTACATCCACCTCCACTTCCCTCGACTTCAACCATATTGCGCATCAGGTACCCTAAAATCTCATATCTCTTTGATCATGGTTTACAAGTAAGGAATACATCTCCATTGGTATAAAGATTTTAAAACAAAGCCATTCCGGAGATCCTTGATTCCTAACAATTCCATCATGAAATTAATGTTTACTCGTACTTTAATCAGGCCATTTCTGAAAAGGATCACGGCGATGTTTGCGAGGGAGGAGAGACAAAGGAGTGTCTGGCTAGAAGAACGTTAGAGGCTCATACCGATTACATCTATACCGATAATACCAAGTCATGAGCTGCTGTATTCCGACCATTATATTAATAATTATTTTTATGTGTCTCTTAT

mRNA sequence

ATGTCGAAGTTCATAGCTCTCTTCTCCATTGTAGCGCTCGTGACAATGTCTCTTTTCTCCGCCTCCGAAGCTCGTCCCATCGCTACATCCACCTCCACTTCCCTCGACTTCAACCATATTGCGCATCAGGCCATTTCTGAAAAGGATCACGGCGATGTTTGCGAGGGAGGAGAGACAAAGGAGTGTCTGGCTAGAAGAACGTTAGAGGCTCATACCGATTACATCTATACCGATAATACCAAGTCATGAGCTGCTGTATTCCGACCATTATATTAATAATTATTTTTATGTGTCTCTTAT

Coding sequence (CDS)

ATGTCGAAGTTCATAGCTCTCTTCTCCATTGTAGCGCTCGTGACAATGTCTCTTTTCTCCGCCTCCGAAGCTCGTCCCATCGCTACATCCACCTCCACTTCCCTCGACTTCAACCATATTGCGCATCAGGCCATTTCTGAAAAGGATCACGGCGATGTTTGCGAGGGAGGAGAGACAAAGGAGTGTCTGGCTAGAAGAACGTTAGAGGCTCATACCGATTACATCTATACCGATAATACCAAGTCATGA

Protein sequence

MSKFIALFSIVALVTMSLFSASEARPIATSTSTSLDFNHIAHQAISEKDHGDVCEGGETKECLARRTLEAHTDYIYTDNTKS
Homology
[Close]
BLAST of CmaCh12G006060 vs. Swiss-Prot
Match: PSK_ASPOF (Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 1 

Query: 2  SKFIALFSIVALVTMSLFSASEARPIATSTSTSLDFNHIAHQAISEKDHGDVCEGGETKE 61
          SK I L  I  L ++SL  A  ARP+  + ST       +   I EK H + CEG   +E
Sbjct: 3  SKAITLLLIALLFSLSL--AQAARPLQPADSTK------SVHVIPEKVHDEACEGVGEEE 62

Query: 62 CLARRTLEAHTDYIYTDN 80
          CL RRTL AH DYIYT +
Sbjct: 63 CLMRRTLTAHVDYIYTQD 72

[Close]
BLAST of CmaCh12G006060 vs. TAIR10
Match: AT3G49780.1 (AT3G49780.1 phytosulfokine 4 precursor)

HSP 1 Score: 47.0 bits (110), Expect = 6.6e-06
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 1 

Query: 1  MSKFIALFSIVALVTMSLFSASEARPIATSTSTSLDFNHIAHQAISEKDHGDVCEGGETK 60
          M KF  +F +  L+  +L  A+   P   +T+T+L   +   +   +K   + C G   +
Sbjct: 1  MGKFTTIFIMALLLCSTLTYAARLTP---TTTTALSRENSVKEIEGDKVEEESCNGIGEE 60

Query: 61 ECLARRTLEAHTDYIYTDNTK 82
          ECL RR+L  HTDYIYT N K
Sbjct: 61 ECLIRRSLVLHTDYIYTQNHK 78

The following BLAST results are available for this feature:
BLAST of CmaCh12G006060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSK_ASPOF2.1e-0644.87Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1[more]
BLAST of CmaCh12G006060 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh12G006060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49780.16.6e-0635.80 phytosulfokine 4 precursor[more]
BLAST of CmaCh12G006060 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009438Phytosulfokine
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Biological Process
TermDefinition
GO:0008283cell proliferation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
cellular_component GO:0005576 extracellular region
molecular_function GO:0008083 growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006060.1CmaCh12G006060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 39..81
score: 6.1
NoneNo IPR availablePANTHERPTHR33285FAMILY NOT NAMEDcoord: 5..77
score: 2.1
NoneNo IPR availablePANTHERPTHR33285:SF5SUBFAMILY NOT NAMEDcoord: 5..77
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G006060Cla022642Watermelon (97103) v1cmawmB148
CmaCh12G006060ClCG08G016640Watermelon (Charleston Gray)cmawcgB169
CmaCh12G006060CmoCh05G001330Cucurbita moschata (Rifu)cmacmoB199
CmaCh12G006060Lsi08G015410Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G006060Cp4.1LG07g04680Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G006060Cp4.1LG11g01060Cucurbita pepo (Zucchini)cmacpeB179
CmaCh12G006060Cla97C08G160340Watermelon (97103) v2cmawmbB194
CmaCh12G006060Bhi04G000412Wax gourdcmawgoB0194
CmaCh12G006060Carg11895Silver-seed gourdcarcmaB0249
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G006060CmaCh05G001280Cucurbita maxima (Rimu)cmacmaB199
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G006060Wax gourdcmawgoB0217
CmaCh12G006060Wax gourdcmawgoB0228
CmaCh12G006060Cucurbita maxima (Rimu)cmacmaB033
CmaCh12G006060Cucurbita maxima (Rimu)cmacmaB182
CmaCh12G006060Cucurbita maxima (Rimu)cmacmaB186
CmaCh12G006060Cucurbita maxima (Rimu)cmacmaB206
CmaCh12G006060Cucumber (Gy14) v1cgycmaB0224
CmaCh12G006060Cucumber (Gy14) v1cgycmaB0962
CmaCh12G006060Cucumber (Gy14) v1cgycmaB1088
CmaCh12G006060Cucurbita moschata (Rifu)cmacmoB164
CmaCh12G006060Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G006060Cucurbita moschata (Rifu)cmacmoB184
CmaCh12G006060Cucurbita moschata (Rifu)cmacmoB188
CmaCh12G006060Cucurbita moschata (Rifu)cmacmoB204
CmaCh12G006060Wild cucumber (PI 183967)cmacpiB175
CmaCh12G006060Wild cucumber (PI 183967)cmacpiB187
CmaCh12G006060Wild cucumber (PI 183967)cmacpiB197
CmaCh12G006060Cucumber (Chinese Long) v2cmacuB174
CmaCh12G006060Cucumber (Chinese Long) v2cmacuB185
CmaCh12G006060Cucumber (Chinese Long) v2cmacuB194
CmaCh12G006060Cucumber (Chinese Long) v2cmacuB201
CmaCh12G006060Melon (DHL92) v3.5.1cmameB184
CmaCh12G006060Melon (DHL92) v3.5.1cmameB156
CmaCh12G006060Melon (DHL92) v3.5.1cmameB182
CmaCh12G006060Watermelon (Charleston Gray)cmawcgB153
CmaCh12G006060Watermelon (Charleston Gray)cmawcgB160
CmaCh12G006060Watermelon (97103) v1cmawmB159
CmaCh12G006060Watermelon (97103) v1cmawmB166
CmaCh12G006060Cucurbita pepo (Zucchini)cmacpeB168
CmaCh12G006060Cucurbita pepo (Zucchini)cmacpeB192
CmaCh12G006060Cucurbita pepo (Zucchini)cmacpeB199
CmaCh12G006060Cucurbita pepo (Zucchini)cmacpeB187
CmaCh12G006060Bottle gourd (USVL1VR-Ls)cmalsiB174
CmaCh12G006060Cucumber (Gy14) v2cgybcmaB179
CmaCh12G006060Cucumber (Gy14) v2cgybcmaB479
CmaCh12G006060Cucumber (Gy14) v2cgybcmaB715
CmaCh12G006060Cucumber (Gy14) v2cgybcmaB906
CmaCh12G006060Melon (DHL92) v3.6.1cmamedB170
CmaCh12G006060Melon (DHL92) v3.6.1cmamedB198
CmaCh12G006060Melon (DHL92) v3.6.1cmamedB200
CmaCh12G006060Silver-seed gourdcarcmaB0002
CmaCh12G006060Silver-seed gourdcarcmaB0449
CmaCh12G006060Silver-seed gourdcarcmaB0557
CmaCh12G006060Silver-seed gourdcarcmaB0631
CmaCh12G006060Silver-seed gourdcarcmaB1067
CmaCh12G006060Cucumber (Chinese Long) v3cmacucB0203
CmaCh12G006060Cucumber (Chinese Long) v3cmacucB0215
CmaCh12G006060Cucumber (Chinese Long) v3cmacucB0221
CmaCh12G006060Cucumber (Chinese Long) v3cmacucB0232
CmaCh12G006060Watermelon (97103) v2cmawmbB160
CmaCh12G006060Watermelon (97103) v2cmawmbB183