ClCG08G002930 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G002930
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 7076866 .. 7077186 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAAGATCAAAGTTGAGGACTTTTAATTTTCCTTTAGGTTTTGGATTATTTATTTATTTTTCATTTTTCAGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

Protein sequence

MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRLSRSARRTGGSKTNRGPPPKMSTGGGVSSYVTVDPITLLQRDDT
Homology
[Close]
BLAST of ClCG08G002930 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

[Close]
BLAST of ClCG08G002930 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

The following BLAST results are available for this feature:
BLAST of ClCG08G002930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA1.9e-1167.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
BLAST of ClCG08G002930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|2.8e-1167.74hypothetical protein Csa_6G020130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002930.1ClCG08G002930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G002930Csa6G020130Cucumber (Chinese Long) v2cuwcgB513
ClCG08G002930Bhi04G001732Wax gourdwcgwgoB617
ClCG08G002930CSPI06G02680Wild cucumber (PI 183967)cpiwcgB540
ClCG08G002930CsGy6G002780Cucumber (Gy14) v2cgybwcgB472
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G002930Bottle gourd (USVL1VR-Ls)lsiwcgB445
ClCG08G002930Melon (DHL92) v3.6.1medwcgB290
ClCG08G002930Cucumber (Chinese Long) v3cucwcgB533
ClCG08G002930Watermelon (97103) v2wcgwmbB336
ClCG08G002930Cucumber (Gy14) v1cgywcgB622
ClCG08G002930Cucurbita maxima (Rimu)cmawcgB035
ClCG08G002930Melon (DHL92) v3.5.1mewcgB306
ClCG08G002930Watermelon (97103) v1wcgwmB406
ClCG08G002930Watermelon (97103) v1wcgwmB410