ClCG08G002930.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG08G002930.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 7076866 .. 7077186 (+)
Sequence length240
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAAGATCAAAGTTGAGGACTTTTAATTTTCCTTTAGGTTTTGGATTATTTATTTATTTTTCATTTTTCAGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGTGTCCAGTTATGTAACTGTCGACCCCATCACTCTTTTGCAAAGAGATGACACGTAG

Protein sequence

MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRLSRSARRTGGSKTNRGPPPKMSTGGGVSSYVTVDPITLLQRDDT
Homology
[Close]
BLAST of ClCG08G002930.1 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

[Close]
BLAST of ClCG08G002930.1 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

The following BLAST results are available for this feature:
BLAST of ClCG08G002930.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA1.9e-1167.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
BLAST of ClCG08G002930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|2.8e-1167.74hypothetical protein Csa_6G020130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG08G002930ClCG08G002930gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG08G002930.1ClCG08G002930.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG08G002930.1.cds1ClCG08G002930.1.cds1CDS
ClCG08G002930.1.cds2ClCG08G002930.1.cds2CDS