Csa6G020130 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G020130
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2123566 .. 2123766 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Protein sequence

MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTGGGGQTN*

Homology

[Close]

BLAST of Csa6G020130 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 67
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]

BLAST of Csa6G020130 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-15
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60

Query: 61 GGGGQTN 67
          GGGGQTN
Sbjct: 61 GGGGQTN 60

[Close]

BLAST of Csa6G020130 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 67
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]

BLAST of Csa6G020130 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-15
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60

Query: 61 GGGGQTN 67
          GGGGQTN
Sbjct: 61 GGGGQTN 60

The following BLAST results are available for this feature:

BLAST of Csa6G020130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN3_CUCSA	1.0e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1	[more]
A0A0A0L7D2_CUCSA	1.4e-15	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1	[more]

BLAST of Csa6G020130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190695\|gb\|KGN45899.1\|	1.5e-29	100.00	hypothetical protein Csa_6G020130 [Cucumis sativus]	[more]
gi\|700202575\|gb\|KGN57708.1\|	2.0e-15	73.13	hypothetical protein Csa_3G258100 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G020130.1	Csa6G020130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G020130	MELO3C026150	Melon (DHL92) v3.5.1	cumeB418
Csa6G020130	ClCG08G002930	Watermelon (Charleston Gray)	cuwcgB513
Csa6G020130	Lsi08G002620	Bottle gourd (USVL1VR-Ls)	culsiB471
Csa6G020130	MELO3C026150.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G020130	Cla97C08G146770	Watermelon (97103) v2	cuwmbB504
Csa6G020130	Bhi04G001732	Wax gourd	cuwgoB589
Csa6G020130	CSPI06G02680	Wild cucumber (PI 183967)	cpicuB314
Csa6G020130	CsGy6G002780	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G020130	Watermelon (97103) v2	cuwmbB490
Csa6G020130	Cucumber (Gy14) v1	cgycuB511
Csa6G020130	Watermelon (Charleston Gray)	cuwcgB500
Csa6G020130	Watermelon (97103) v1	cuwmB462
Csa6G020130	Watermelon (97103) v1	cuwmB463
Csa6G020130	Watermelon (97103) v1	cuwmB475