ClCG06G002170 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G002170
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionKatanin p80 subunit-like protein
LocationCG_Chr06 : 2383071 .. 2383283 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTGGGGGCCAGTTTTCGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGACTTCTCTTTCAGCTTCCCGGAAATCGCAGGTGCTTAGAGTTTGGCAACTTTCACACGAGTGCTGCTTCTATCATCGTCCATTCGATTCTCTACTTCGGTCTCATTTGCGTCTTCTTACTCGCCATCAAGGTTCATCTCTACATCGGTTCCTAA

mRNA sequence

ATGGCGGATTGGGGGCCAGTTTTCGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGACTTCTCTTTCAGCTTCCCGGAAATCGCAGGTGCTTAGAGTTTGGCAACTTTCACACGAGTGCTGCTTCTATCATCGTCCATTCGATTCTCTACTTCGGTCTCATTTGCGTCTTCTTACTCGCCATCAAGGTTCATCTCTACATCGGTTCCTAA

Coding sequence (CDS)

ATGGCGGATTGGGGGCCAGTTTTCGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGACTTCTCTTTCAGCTTCCCGGAAATCGCAGGTGCTTAGAGTTTGGCAACTTTCACACGAGTGCTGCTTCTATCATCGTCCATTCGATTCTCTACTTCGGTCTCATTTGCGTCTTCTTACTCGCCATCAAGGTTCATCTCTACATCGGTTCCTAA

Protein sequence

MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLLAIKVHLYIGS
Homology
[Close]
BLAST of ClCG06G002170 vs. TrEMBL
Match: A0A0A0KAG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of ClCG06G002170 vs. TrEMBL
Match: A0A067K3J9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS ASI+VHS+LYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIKVHLYIG 70
          A++VHLY+G
Sbjct: 61 ALRVHLYLG 69

[Close]
BLAST of ClCG06G002170 vs. TrEMBL
Match: A0A061E622_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 57/69 (82.61%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQ+PG+ RC++FGNF TS ASI+VHS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHLRCVDFGNFKTSGASILVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLY+G
Sbjct: 61 AIKVHLYLG 69

[Close]
BLAST of ClCG06G002170 vs. TrEMBL
Match: A0A0D2T1M9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165700 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 54/69 (78.26%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVA++LFVLLTPGLLFQ+PG+ RC+EFGNF TS AS+++HS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLFQVPGHHRCVEFGNFKTSGASVLIHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          A+KVHLY+G
Sbjct: 61 AVKVHLYLG 69

[Close]
BLAST of ClCG06G002170 vs. TrEMBL
Match: A0A0D2TRC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176700 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1   MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
           M+DWGP+ VA++LFVLLTPGLLFQ+PG+ RC+EFGNF TSAASI+VHS+LYFGLICVFLL
Sbjct: 49  MSDWGPIIVALVLFVLLTPGLLFQVPGHHRCVEFGNFKTSAASILVHSLLYFGLICVFLL 108

Query: 61  AIKVHLYIG 70
           AIKVHLY+G
Sbjct: 109 AIKVHLYLG 117

[Close]
BLAST of ClCG06G002170 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-27
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA S+IVHS+LYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIKVHLYIG 70
          A+K+H+YIG
Sbjct: 61 ALKIHIYIG 69

[Close]
BLAST of ClCG06G002170 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 104.8 bits (260), Expect = 2.3e-23
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS ASI+VH+I++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKVHLYIGS 71
          AI++H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]
BLAST of ClCG06G002170 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-22
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS ASI+VH+I++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIKVHLYIG 70
          AI VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]
BLAST of ClCG06G002170 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  S+IVH+++YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIKVHL 67
          A+++H+
Sbjct: 61 ALQIHI 66


HSP 2 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1   MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
           MADW PV V V+LFV+L+PGLLF LPGN R ++FG   T+  +I VH++++F +  + +L
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  AIKVHLYIG 70
           A+ +H+Y G
Sbjct: 134 ALNLHIYTG 142

[Close]
BLAST of ClCG06G002170 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLLA 61
          ADWGPV VAV+LFV+L+PGLLFQLP  RR LE GN  TS  SI+VH+IL+F +I + ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IKVHLYI 69
          I++H++I
Sbjct: 64 IQIHIHI 70

[Close]
BLAST of ClCG06G002170 vs. NCBI nr
Match: gi|659119791|ref|XP_008459846.1| (PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of ClCG06G002170 vs. NCBI nr
Match: gi|778711887|ref|XP_011656810.1| (PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of ClCG06G002170 vs. NCBI nr
Match: gi|802724374|ref|XP_012085706.1| (PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS ASI+VHS+LYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIKVHLYIG 70
          A++VHLY+G
Sbjct: 61 ALRVHLYLG 69

[Close]
BLAST of ClCG06G002170 vs. NCBI nr
Match: gi|590692078|ref|XP_007043960.1| (Uncharacterized protein TCM_008724 [Theobroma cacao])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 57/69 (82.61%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQ+PG+ RC++FGNF TS ASI+VHS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHLRCVDFGNFKTSGASILVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLY+G
Sbjct: 61 AIKVHLYLG 69

[Close]
BLAST of ClCG06G002170 vs. NCBI nr
Match: gi|823210744|ref|XP_012438335.1| (PREDICTED: uncharacterized protein LOC105764345 [Gossypium raimondii])

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 54/69 (78.26%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60
          M+DWGPVFVA++LFVLLTPGLLFQ+PG+ RC+EFGNF TS AS+++HS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLFQVPGHHRCVEFGNFKTSGASVLIHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          A+KVHLY+G
Sbjct: 61 AVKVHLYLG 69

The following BLAST results are available for this feature:
BLAST of ClCG06G002170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAG8_CUCSA1.1e-3197.14Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1[more]
A0A067K3J9_JATCU1.4e-2681.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1[more]
A0A061E622_THECC1.4e-2682.61Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1[more]
A0A0D2T1M9_GOSRA1.9e-2678.26Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165700 PE=4 SV=1[more]
A0A0D2TRC2_GOSRA1.9e-2681.16Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176700 PE=4 SV=1[more]
BLAST of ClCG06G002170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08391.15.8e-2773.91 Protein of unknown function (DUF 3339)[more]
AT3G48660.12.3e-2367.14 Protein of unknown function (DUF 3339)[more]
AT5G63500.11.9e-2265.22 Protein of unknown function (DUF 3339)[more]
AT3G27030.12.8e-2163.64 unknown protein[more]
AT3G01940.11.5e-1961.19 Protein of unknown function (DUF 3339)[more]
BLAST of ClCG06G002170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119791|ref|XP_008459846.1|7.3e-3298.57PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo][more]
gi|778711887|ref|XP_011656810.1|1.6e-3197.14PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus][more]
gi|802724374|ref|XP_012085706.1|2.1e-2681.16PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas][more]
gi|590692078|ref|XP_007043960.1|2.1e-2682.61Uncharacterized protein TCM_008724 [Theobroma cacao][more]
gi|823210744|ref|XP_012438335.1|2.7e-2678.26PREDICTED: uncharacterized protein LOC105764345 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021775DUF3339
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002170.1ClCG06G002170.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..67
score: 1.2
NoneNo IPR availablePANTHERPTHR33128FAMILY NOT NAMEDcoord: 1..69
score: 8.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G002170Csa6G095300Cucumber (Chinese Long) v2cuwcgB476
ClCG06G002170MELO3C022313Melon (DHL92) v3.5.1mewcgB124
ClCG06G002170Cla000689Watermelon (97103) v1wcgwmB348
ClCG06G002170Cla97C06G111490Watermelon (97103) v2wcgwmbB273
ClCG06G002170Bhi12G002182Wax gourdwcgwgoB491
ClCG06G002170Bhi08G001235Wax gourdwcgwgoB532
ClCG06G002170CSPI06G07850Wild cucumber (PI 183967)cpiwcgB503
ClCG06G002170Cucsa.349680Cucumber (Gy14) v1cgywcgB595
ClCG06G002170CmaCh08G001760Cucurbita maxima (Rimu)cmawcgB807
ClCG06G002170CmaCh17G014400Cucurbita maxima (Rimu)cmawcgB322
ClCG06G002170CmoCh08G001790Cucurbita moschata (Rifu)cmowcgB802
ClCG06G002170CmoCh17G013810Cucurbita moschata (Rifu)cmowcgB318
ClCG06G002170Lsi09G017230Bottle gourd (USVL1VR-Ls)lsiwcgB029
ClCG06G002170Cp4.1LG03g12830Cucurbita pepo (Zucchini)cpewcgB564
ClCG06G002170Cp4.1LG08g06180Cucurbita pepo (Zucchini)cpewcgB789
ClCG06G002170MELO3C022313.2Melon (DHL92) v3.6.1medwcgB119
ClCG06G002170Carg11600Silver-seed gourdcarwcgB0013
ClCG06G002170Carg05006Silver-seed gourdcarwcgB0082
ClCG06G002170CsaV3_6G008240Cucumber (Chinese Long) v3cucwcgB497
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG06G002170ClCG06G018000Watermelon (Charleston Gray)wcgwcgB173
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G002170Cucurbita pepo (Zucchini)cpewcgB296
ClCG06G002170Cucurbita pepo (Zucchini)cpewcgB402
ClCG06G002170Cucumber (Gy14) v2cgybwcgB229
ClCG06G002170Cucumber (Gy14) v2cgybwcgB438
ClCG06G002170Silver-seed gourdcarwcgB0083
ClCG06G002170Cucurbita maxima (Rimu)cmawcgB803
ClCG06G002170Cucurbita moschata (Rifu)cmowcgB798
ClCG06G002170Wild cucumber (PI 183967)cpiwcgB254
ClCG06G002170Watermelon (97103) v1wcgwmB345