CmoCh08G001790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G001790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr08 : 1053587 .. 1054794 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGGTTCATCTCTACATTGGTTAATCGAGCTTCACCTCTACTTTTGTTCGTTTCTAATTCTTCCACCAAATGCATAGTCACTTCAACTTTGTTTTGATTAGTTTGTTCTAAATATTCGGTCGATGTCCTAGGTTTTCAAGTACGTGTAGCAAAATTGTTGAGTTATCGAACATATAGTAGGCTTCATCATTTCAAAGTTGTGCTATCTTGAGGCTTTGTATTGGCTATGGACGTTTTTCTTTAAGATCTGAACTTTATCCTTCGACCCATTTAACAAAACTCACTTGAATGAATATGGTTAATCTAAACGAACATAAAGTTGAACAATTTTAGTGCACTTGGGGTTGGGGGTTGGATGTTACACAAACAAATAGCTCTAAAAGTGTGAGATCCCACATCAACCGGAAAAGGAACAAGTACCAACAAAGCTAGACAAGGATTGTGAGATCTCACATCGATTTGAGAAGGGAACGAAACATTTTTTATAAGAATGTAGAAACCTCTTCCTAATAAACCCATTTTGAAAACCTTGAGGGGAAGCCCAAAAGAAAAAGCTCAAAGAAGACATGTTAGTGGTAGACTTAGACTGATACCTGAGAGTCTAAGCTAAGATTTCTCTGAAAGACGAAACCTATAACAGCCCAGATCCACCGCTAGCAGATATTGTCCTACTTGGACTTTCCCTTTCGGGCTTCCCCTCAAAGTTTTAAAACGCGTTTGCTAGGGAAAGGTTTTCACACCCTTATAACGGGTGTTTTGGTCTCCTCCCCAACCAACGTGGGACATCACATGGGACATCACAAAACCTCCGACACCATGAAAATGAACCTTCACAATTGTTACGACATTTTTTATTTCTTTTTGTTTTATAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

mRNA sequence

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Coding sequence (CDS)

ATGGCAGATTGGGGGCCAGTTTTTGTGGCTGTCATTCTGTTTGTTTTGCTAACACCTGGGCTGCTTTTCCAGCTTCCTGGAAATCGAAGGTGCTTGGAGTTCGGCAACTTTCACACCAGCGCTGCTGCTATCGTCGTTCATTCTCTTCTCTACTTCGGTCTCATTTGCGTCTTCTTGCTCGCCATCAAGCCTAACAGGCATTTCAAACAGTGGCAGTTACACATATGGACTCAAAGTCTTAAAAGCAGGAAGATACACAACACAATGTCACTCCACAACCTCAAAAAACAACAAACGGTGGTAAATAATTCAAACTTCATCTTGCCTATATGTTTCTAG

Homology

[Close]

BLAST of CmoCh08G001790 vs. TrEMBL
Match: A0A0A0KAG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.9e-27
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790 vs. TrEMBL
Match: A0A0D2S412_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G166400 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 51/67 (76.12%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVA++LFVLLTPGLLFQ+PG+ RC+EFGNF TS A+I +HSLLYFGLICVFLL
Sbjct: 1  MSDWGPVFVALVLFVLLTPGLLFQVPGHHRCVEFGNFKTSGASIFIHSLLYFGLICVFLL 60

Query: 61 AIKPNRH 68
          A+K + H
Sbjct: 61 AVKVHLH 67

[Close]

BLAST of CmoCh08G001790 vs. TrEMBL
Match: A0A067K3J9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS A+I+VHSLLYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALR 63

[Close]

BLAST of CmoCh08G001790 vs. TrEMBL
Match: A0A061E622_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 52/63 (82.54%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQ+PG+ RC++FGNF TS A+I+VHSLLYFGLICVFLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHLRCVDFGNFKTSGASILVHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790 vs. TrEMBL
Match: W9QL77_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017442 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-22
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQLPG   C+EFGNF TS A+I++HSLLYFGLIC+FLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQLPGRHGCVEFGNFQTSGASIMIHSLLYFGLICIFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA +++VHSLLYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIK 64
          A+K
Sbjct: 61 ALK 63

[Close]

BLAST of CmoCh08G001790 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKPNRHFKQWQLHIWT 78
          AI+         LHI+T
Sbjct: 61 AIR---------LHIYT 68

[Close]

BLAST of CmoCh08G001790 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  +++VH+L+YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALQ 63

[Close]

BLAST of CmoCh08G001790 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AI 63
          AI
Sbjct: 61 AI 62

[Close]

BLAST of CmoCh08G001790 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 84.7 bits (208), Expect = 3.9e-17
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1


Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLLA 61
          ADWGPV VAV LF+LL+PGLLFQLP   R +EFGN  TS  +I+VH+++YF ++ + ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IKPNRHF 69
          I+ + HF
Sbjct: 63 IQIHIHF 69

[Close]

BLAST of CmoCh08G001790 vs. NCBI nr
Match: gi|778711887|ref|XP_011656810.1| (PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790 vs. NCBI nr
Match: gi|659119791|ref|XP_008459846.1| (PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-26
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+I+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

[Close]

BLAST of CmoCh08G001790 vs. NCBI nr
Match: gi|823256702|ref|XP_012460998.1| (PREDICTED: uncharacterized protein LOC105780989 [Gossypium raimondii])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 51/67 (76.12%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVA++LFVLLTPGLLFQ+PG+ RC+EFGNF TS A+I +HSLLYFGLICVFLL
Sbjct: 1  MSDWGPVFVALVLFVLLTPGLLFQVPGHHRCVEFGNFKTSGASIFIHSLLYFGLICVFLL 60

Query: 61 AIKPNRH 68
          A+K + H
Sbjct: 61 AVKVHLH 67

[Close]

BLAST of CmoCh08G001790 vs. NCBI nr
Match: gi|802724374|ref|XP_012085706.1| (PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas])

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-22
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS A+I+VHSLLYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIK 64
          A++
Sbjct: 61 ALR 63

[Close]

BLAST of CmoCh08G001790 vs. NCBI nr
Match: gi|694431450|ref|XP_009343145.1| (PREDICTED: uncharacterized protein LOC103935116 [Pyrus x bretschneideri])

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-22
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60
          M DWGPVFVAV+LFVLL+PGLLFQLPG+  C+EFG+FHTS AAI++HSLLYFGLICVFLL
Sbjct: 1  MLDWGPVFVAVVLFVLLSPGLLFQLPGSHGCVEFGSFHTSGAAIMIHSLLYFGLICVFLL 60

Query: 61 AIK 64
          AIK
Sbjct: 61 AIK 63

The following BLAST results are available for this feature:

BLAST of CmoCh08G001790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G001790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAG8_CUCSA	7.9e-27	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1	[more]
A0A0D2S412_GOSRA	1.2e-22	76.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G166400 PE=4 SV=1	[more]
A0A067K3J9_JATCU	2.6e-22	80.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1	[more]
A0A061E622_THECC	3.4e-22	82.54	Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1	[more]
W9QL77_9ROSA	4.5e-22	80.95	Uncharacterized protein OS=Morus notabilis GN=L484_017442 PE=4 SV=1	[more]

BLAST of CmoCh08G001790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08391.1	1.1e-22	73.02	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.4e-19	59.74	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	5.4e-19	63.49	unknown protein	[more]
AT5G63500.1	3.5e-18	62.90	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	3.9e-17	55.22	Protein of unknown function (DUF 3339)	[more]

BLAST of CmoCh08G001790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711887\|ref\|XP_011656810.1\|	1.1e-26	95.24	PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus]	[more]
gi\|659119791\|ref\|XP_008459846.1\|	2.5e-26	93.65	PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo]	[more]
gi\|823256702\|ref\|XP_012460998.1\|	1.7e-22	76.12	PREDICTED: uncharacterized protein LOC105780989 [Gossypium raimondii]	[more]
gi\|802724374\|ref\|XP_012085706.1\|	3.8e-22	80.95	PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas]	[more]
gi\|694431450\|ref\|XP_009343145.1\|	3.8e-22	82.54	PREDICTED: uncharacterized protein LOC103935116 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G001790.1	CmoCh08G001790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..63 score: 1.3
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..63 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G001790	Cucsa.349680	Cucumber (Gy14) v1	cgycmoB0953
CmoCh08G001790	CmaCh17G014400	Cucurbita maxima (Rimu)	cmacmoB370
CmoCh08G001790	CmaCh08G001760	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G001790	Cla000689	Watermelon (97103) v1	cmowmB873
CmoCh08G001790	Csa6G095300	Cucumber (Chinese Long) v2	cmocuB883
CmoCh08G001790	MELO3C022313	Melon (DHL92) v3.5.1	cmomeB807
CmoCh08G001790	ClCG06G002170	Watermelon (Charleston Gray)	cmowcgB802
CmoCh08G001790	CSPI06G07850	Wild cucumber (PI 183967)	cmocpiB896
CmoCh08G001790	Lsi09G017230	Bottle gourd (USVL1VR-Ls)	cmolsiB806
CmoCh08G001790	MELO3C022313.2	Melon (DHL92) v3.6.1	cmomedB910
CmoCh08G001790	CsaV3_6G008240	Cucumber (Chinese Long) v3	cmocucB1051
CmoCh08G001790	Cla97C06G111490	Watermelon (97103) v2	cmowmbB894
CmoCh08G001790	Bhi12G002182	Wax gourd	cmowgoB1086
CmoCh08G001790	Carg11600	Silver-seed gourd	carcmoB0023
CmoCh08G001790	Carg05006	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G001790	CmoCh17G013810	Cucurbita moschata (Rifu)	cmocmoB315

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G001790	Melon (DHL92) v3.6.1	cmomedB906
CmoCh08G001790	Watermelon (97103) v2	cmowmbB899
CmoCh08G001790	Watermelon (Charleston Gray)	cmowcgB798
CmoCh08G001790	Watermelon (97103) v1	cmowmB865
CmoCh08G001790	Cucurbita pepo (Zucchini)	cmocpeB856
CmoCh08G001790	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G001790	Bottle gourd (USVL1VR-Ls)	cmolsiB800
CmoCh08G001790	Cucumber (Gy14) v2	cgybcmoB850