Cp4.1LG03g12830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein of unknown function (DUF 3339)
LocationCp4.1LG03 : 9964137 .. 9964343 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTGGGGTCCGGTGGTTGTAGCCGTGGTTCTGTTCATTCTGCTATCTCCAGGGCTGGTGGTTCAGGTCCATGGCGCTGAAAAGTTCATTGAGTTCGGAAATTTTGAAACCAGCGCCACCTCCATTTTCCTTCACTCCCTCATCTTCTTCGCCCTCTTCTGCCTCTTCACCCTCGTCCTCCACCTCCATATCTACATCTGA

mRNA sequence

ATGGCGGATTGGGGTCCGGTGGTTGTAGCCGTGGTTCTGTTCATTCTGCTATCTCCAGGGCTGGTGGTTCAGGTCCATGGCGCTGAAAAGTTCATTGAGTTCGGAAATTTTGAAACCAGCGCCACCTCCATTTTCCTTCACTCCCTCATCTTCTTCGCCCTCTTCTGCCTCTTCACCCTCGTCCTCCACCTCCATATCTACATCTGA

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTGGTTGTAGCCGTGGTTCTGTTCATTCTGCTATCTCCAGGGCTGGTGGTTCAGGTCCATGGCGCTGAAAAGTTCATTGAGTTCGGAAATTTTGAAACCAGCGCCACCTCCATTTTCCTTCACTCCCTCATCTTCTTCGCCCTCTTCTGCCTCTTCACCCTCGTCCTCCACCTCCATATCTACATCTGA

Protein sequence

MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYI
Homology
[Close]
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match: A0A061EEJ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-15
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV VAVVLFILL+PGL++QV G  +FIEFGNF+TS  SI +HS+I+FAL C+F L
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 VLHLHIYI 69
           + +H+Y+
Sbjct: 61 AVGVHMYV 68

[Close]
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match: A0A0D9VGA2_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.5e-15
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVVV VVLF+LLSPGL+V++ G  + ++FG+F T+  +IF+H+LIFFALF + TL
Sbjct: 1  MADWGPVVVGVVLFVLLSPGLLVELPGTHRHVDFGSFRTNGKAIFVHTLIFFALFAILTL 60

Query: 61 VLHLHIY 68
           LH+HIY
Sbjct: 61 ALHVHIY 67

[Close]
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match: A0A067LG52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.2e-15
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV VAVVLFILL+PGL++Q+ G  +FIEFGNF+TS  SI +HS+++FAL C+F L
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 VLHLHIYI 69
           + +H+Y+
Sbjct: 61 AVGVHMYL 68

[Close]
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match: Q8LBX6_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g08391 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 39/68 (57.35%), Postives = 58/68 (85.29%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV+V V+LF++L+PGL+ Q+ G +K++EFGNF+TSA S+ +HSL++F+L C+F L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 VLHLHIYI 69
           L +HIYI
Sbjct: 61 ALKIHIYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match: M0T7L2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.4e-15
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV +AV+LFILLSPGL+ QV G  +FIEFGNF+TS  SI +HS+I+F L  +F L
Sbjct: 1  MADWGPVFMAVILFILLSPGLLFQVPGRSRFIEFGNFQTSGISILVHSIIYFGLLAIFLL 60

Query: 61 VLHLHIYI 69
           +H+H+YI
Sbjct: 61 AVHVHMYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 87.0 bits (214), Expect = 4.7e-18
Identity = 39/68 (57.35%), Postives = 58/68 (85.29%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV+V V+LF++L+PGL+ Q+ G +K++EFGNF+TSA S+ +HSL++F+L C+F L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 VLHLHIYI 69
           L +HIYI
Sbjct: 61 ALKIHIYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-16
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVVVAV+LF+LL+PGL+ Q+    + +EFGN +TS  SI +H++IFF L  +FT+
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 VLHLHIY 68
           + LHIY
Sbjct: 61 AIRLHIY 67

[Close]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-15
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV++AV+LF++LSPGL+ Q+    + +EFGN +TS  SI +H++IFF L  +FT+
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 VLHLHIY 68
           +++HIY
Sbjct: 61 AINVHIY 67

[Close]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M DWGPV VAV LF+LL+PGL++QV G  + +EFG F+TS  S+ +H+LI+F L C+  L
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 VLHLHI 67
           L +HI
Sbjct: 61 ALQIHI 66

[Close]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match: AT3G01950.1 (AT3G01950.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-13
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 3  DWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTLVL 62
          DWGPV+++V+ FI+LSPG++ Q+ G  K +EFG F+TS  SI +H+L+FFA   +  + L
Sbjct: 4  DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63

Query: 63 HLHIY 68
          H+HIY
Sbjct: 64 HIHIY 68

[Close]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match: gi|449468814|ref|XP_004152116.1| (PREDICTED: uncharacterized protein LOC101215245 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-24
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPVVVA++LFILLSPGL+ QVHGAEKFI FGNFETSATSIFLHSLIFFALFCLFTL
Sbjct: 1  MADWGPVVVALILFILLSPGLLFQVHGAEKFIVFGNFETSATSIFLHSLIFFALFCLFTL 60

Query: 61 VLHLHIYI 69
          VLH HIYI
Sbjct: 61 VLHPHIYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match: gi|659108087|ref|XP_008454011.1| (PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 8.4e-17
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAVVLF+LLSPGL+ Q+ G   FI+FGNF+TS +SIF+HSLIFFAL  LFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTF 60

Query: 61 VLHLHIYI 69
          V+ LHIYI
Sbjct: 61 VIQLHIYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match: gi|449468812|ref|XP_004152115.1| (PREDICTED: uncharacterized protein LOC101215007 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          MADWGPV VAVVLF+LLSPGL+ Q+ G   F++FGNF+TS  SIF+HSLIFFAL  LFT 
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60

Query: 61 VLHLHIYI 69
          V+ LHIYI
Sbjct: 61 VIQLHIYI 68

[Close]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match: gi|590647455|ref|XP_007031906.1| (Uncharacterized protein TCM_017235 [Theobroma cacao])

HSP 1 Score: 88.6 bits (218), Expect = 4.6e-15
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV VAVVLFILL+PGL++QV G  +FIEFGNF+TS  SI +HS+I+FAL C+F L
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 VLHLHIYI 69
           + +H+Y+
Sbjct: 61 AVGVHMYV 68

[Close]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match: gi|802539276|ref|XP_012070220.1| (PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MADWGPVVVAVVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTL 60
          M+DWGPV VAVVLFILL+PGL++Q+ G  +FIEFGNF+TS  SI +HS+++FAL C+F L
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 VLHLHIYI 69
           + +H+Y+
Sbjct: 61 AVGVHMYL 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g12830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061EEJ7_THECC3.2e-1563.24Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1[more]
A0A0D9VGA2_9ORYZ5.5e-1562.69Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
A0A067LG52_JATCU7.2e-1560.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1[more]
Q8LBX6_ARATH9.4e-1557.35Uncharacterized protein OS=Arabidopsis thaliana GN=At5g08391 PE=2 SV=1[more]
M0T7L2_MUSAM9.4e-1563.24Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
BLAST of Cp4.1LG03g12830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08391.14.7e-1857.35 Protein of unknown function (DUF 3339)[more]
AT3G48660.15.8e-1656.72 Protein of unknown function (DUF 3339)[more]
AT5G63500.12.2e-1552.24 Protein of unknown function (DUF 3339)[more]
AT3G27030.11.4e-1454.55 unknown protein[more]
AT3G01950.12.1e-1350.77 Protein of unknown function (DUF 3339)[more]
BLAST of Cp4.1LG03g12830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449468814|ref|XP_004152116.1|5.4e-2491.18PREDICTED: uncharacterized protein LOC101215245 [Cucumis sativus][more]
gi|659108087|ref|XP_008454011.1|8.4e-1772.06PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo][more]
gi|449468812|ref|XP_004152115.1|1.4e-1670.59PREDICTED: uncharacterized protein LOC101215007 [Cucumis sativus][more]
gi|590647455|ref|XP_007031906.1|4.6e-1563.24Uncharacterized protein TCM_017235 [Theobroma cacao][more]
gi|802539276|ref|XP_012070220.1|1.0e-1460.29PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021775DUF3339
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12830.1Cp4.1LG03g12830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..67
score: 1.1
NoneNo IPR availablePANTHERPTHR33128FAMILY NOT NAMEDcoord: 1..68
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g12830Cucsa.095050Cucumber (Gy14) v1cgycpeB0197
Cp4.1LG03g12830CmaCh14G014590Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g12830CmaCh06G016700Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g12830CmoCh14G014960Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g12830CmoCh06G016630Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g12830Cla000689Watermelon (97103) v1cpewmB624
Cp4.1LG03g12830MELO3C017739Melon (DHL92) v3.5.1cpemeB588
Cp4.1LG03g12830MELO3C022313Melon (DHL92) v3.5.1cpemeB557
Cp4.1LG03g12830ClCG06G002170Watermelon (Charleston Gray)cpewcgB564
Cp4.1LG03g12830CSPI04G03080Wild cucumber (PI 183967)cpecpiB617
Cp4.1LG03g12830CSPI06G07850Wild cucumber (PI 183967)cpecpiB629
Cp4.1LG03g12830Lsi09G017230Bottle gourd (USVL1VR-Ls)cpelsiB485
Cp4.1LG03g12830MELO3C022313.2Melon (DHL92) v3.6.1cpemedB661
Cp4.1LG03g12830MELO3C017739.2Melon (DHL92) v3.6.1cpemedB698
Cp4.1LG03g12830CsaV3_6G008240Cucumber (Chinese Long) v3cpecucB0784
Cp4.1LG03g12830CsaV3_4G003060Cucumber (Chinese Long) v3cpecucB0767
Cp4.1LG03g12830Bhi12G002182Wax gourdcpewgoB0763
Cp4.1LG03g12830CsGy4G002950Cucumber (Gy14) v2cgybcpeB552
Cp4.1LG03g12830Carg15464Silver-seed gourdcarcpeB0973
Cp4.1LG03g12830Carg06611Silver-seed gourdcarcpeB0176
Cp4.1LG03g12830Carg11600Silver-seed gourdcarcpeB0025
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g12830Cp4.1LG08g06180Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g12830Wax gourdcpewgoB0778
Cp4.1LG03g12830Cucumber (Chinese Long) v2cpecuB615
Cp4.1LG03g12830Bottle gourd (USVL1VR-Ls)cpelsiB513
Cp4.1LG03g12830Watermelon (Charleston Gray)cpewcgB566
Cp4.1LG03g12830Watermelon (97103) v1cpewmB604