Carg15464 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15464
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF 3339)
Location	Cucurbita_argyrosperma_scaffold_069 : 296785 .. 297431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAACAATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGGTAAAGGCAATAGCTAAACGGGATCCCGAGCTTACAAGTACTTGCTTGTGGATGCTATAAAAAATGGGATCCCTATTTTTCGTTCTTACCCCATTTTAAGTAGGTACTTGTAAGGTCGGGTCGTTGCAAGTTAAATAGATATGAATTATTTATATAAATGATTGTGATTATTTATATAATTAGTTGAAGTAACGTATATGCTAATATGAAAGCGAATAGAGTCGTTGTCCAATGAAAGTGGTATAATTAAATACATCTCTAATCACCTTTAATTTGTCATGTTTTGAAGAACGCCCAATTATAAAAACAGCATAAACCGGAGGCAGATGGGCAGTAGCAAAAGCAAAGAGAAAGAAGAAGAATGGCGGATTGGGGCCCTGTTCTTGTGGCAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

mRNA sequence

AATCAAACAATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Coding sequence (CDS)

ATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Protein sequence

MEHVGDRMERTFDVDRVRESQAEVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV

Homology

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022932695.1 (uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 uncharacterized protein LOC111799840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 11 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 68

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022972134.1 (uncharacterized protein LOC111470766 [Cucurbita maxima])

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 22 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 79

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_004152116.1 (PREDICTED: uncharacterized protein LOC101215245 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 7.2e-19
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          +ILFILLSPGLLFQVHGA+KFI FGNFETSATSIFLHSLIFFALFCLFTLVLH HIY+
Sbjct: 11 LILFILLSPGLLFQVHGAEKFIVFGNFETSATSIFLHSLIFFALFCLFTLVLHPHIYI 68

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022932694.1 (uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 uncharacterized protein LOC111470767 [Cucurbita maxima] >XP_023539087.1 uncharacterized protein LOC111799839 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQV G   FIQFGNF+TS  SIF+HSLIFFAL CLFT VL LHIY+
Sbjct: 11 VVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTFVLQLHIYL 68

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022145182.1 (uncharacterized protein LOC111014687 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 4.5e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQV G  +F++FGNF TS  SIF+HSLIFFAL CLFT V+ LHIY+
Sbjct: 11 VVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTFVVQLHIYI 68

[Close]

BLAST of Carg15464 vs. TAIR10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-14
Identity = 33/58 (56.90%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILF++L+PGLLFQ+ G  K+++FGNF+TSA S+ +HSL++F+L C+F L L +HIY+
Sbjct: 11 VILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLALKIHIYI 68

[Close]

BLAST of Carg15464 vs. TAIR10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VILF+LL+PGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+ + LHIY
Sbjct: 11 VILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIAIRLHIY 67

[Close]

BLAST of Carg15464 vs. TAIR10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-11
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VILF++LSPGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+ +++HIY
Sbjct: 11 VILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIAINVHIY 67

[Close]

BLAST of Carg15464 vs. TAIR10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VI FI+LSPG+LFQ+ G  K ++FG F+TS  SI +H+L+FFA   +  + LH+HIY
Sbjct: 12 VIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIALHIHIY 68

[Close]

BLAST of Carg15464 vs. TAIR10
Match: AT5G14110.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V LFI+L+PG+LFQ+ G  K ++FG F+TS  +I +H+LIFFA   +  + LH+HIYV
Sbjct: 12 VFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIALHIHIYV 69

[Close]

BLAST of Carg15464 vs. TrEMBL
Match: tr|A0A1S3BX44|A0A1S3BX44_CUCME (uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQ+ G   FIQFGNF+TS +SIF+HSLIFFAL  LFT V+ LHIY+
Sbjct: 11 VVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTFVIQLHIYI 68

[Close]

BLAST of Carg15464 vs. TrEMBL
Match: tr|A0A2R6RUQ4|A0A2R6RUQ4_ACTCH (Rho GTPase-activating protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04147 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LFILLSPGLLFQV G  +FI+FGNF+TS  SI +H+L++FAL C+F L + +H+Y+
Sbjct: 11 VVLFILLSPGLLFQVPGRSRFIEFGNFQTSGVSILIHTLLYFALICIFLLAVGVHVYM 68

[Close]

BLAST of Carg15464 vs. TrEMBL
Match: tr|Q8LBX6|Q8LBX6_ARATH (Transmembrane protein, putative (DUF 3339) OS=Arabidopsis thaliana OX=3702 GN=At5g08391 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 33/58 (56.90%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILF++L+PGLLFQ+ G  K+++FGNF+TSA S+ +HSL++F+L C+F L L +HIY+
Sbjct: 11 VILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLALKIHIYI 68

[Close]

BLAST of Carg15464 vs. TrEMBL
Match: tr|A0A178UJG7|A0A178UJG7_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g08210 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 33/58 (56.90%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILF++L+PGLLFQ+ G  K+++FGNF+TSA S+ +HSL++F+L C+F L L +HIY+
Sbjct: 11 VILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLALKIHIYI 68

[Close]

BLAST of Carg15464 vs. TrEMBL
Match: tr|M0T7L2|M0T7L2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=104000686 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQV G  +FI+FGNF+TS  SI +HS+I+F L  +F L +H+H+Y+
Sbjct: 11 VILFILLSPGLLFQVPGRSRFIEFGNFQTSGISILVHSIIYFGLLAIFLLAVHVHMYI 68

The following BLAST results are available for this feature:

BLAST of Carg15464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932695.1	2.0e-21	100.00	uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 unchar...	[more]
XP_022972134.1	2.0e-21	100.00	uncharacterized protein LOC111470766 [Cucurbita maxima]	[more]
XP_004152116.1	7.2e-19	91.38	PREDICTED: uncharacterized protein LOC101215245 [Cucumis sativus]	[more]
XP_022932694.1	1.2e-13	75.86	uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 unchar...	[more]
XP_022145182.1	4.5e-13	70.69	uncharacterized protein LOC111014687 [Momordica charantia]	[more]

BLAST of Carg15464 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08391.1	3.8e-14	56.90	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	3.0e-11	52.63	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.9e-11	50.88	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	1.5e-10	52.63	Protein of unknown function (DUF 3339)	[more]
AT5G14110.1	2.5e-10	51.72	Protein of unknown function (DUF 3339)	[more]

BLAST of Carg15464 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15464 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BX44\|A0A1S3BX44_CUCME	8.7e-13	70.69	uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=...	[more]
tr\|A0A2R6RUQ4\|A0A2R6RUQ4_ACTCH	1.1e-10	60.34	Rho GTPase-activating protein like OS=Actinidia chinensis var. chinensis OX=1590...	[more]
tr\|Q8LBX6\|Q8LBX6_ARATH	1.4e-10	56.90	Transmembrane protein, putative (DUF 3339) OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
tr\|A0A178UJG7\|A0A178UJG7_ARATH	1.4e-10	56.90	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g08210 PE=4 ...	[more]
tr\|M0T7L2\|M0T7L2_MUSAM	1.4e-10	62.07	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=104000...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15464-RA	Carg15464-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 24..80 e-value: 1.1E-21 score: 76.7
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 23..81
None	No IPR available	PANTHER	PTHR33128:SF7	SUBFAMILY NOT NAMED	coord: 23..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15464	MELO3C017739	Melon (DHL92) v3.5.1	carmeB0694
Carg15464	CSPI04G03080	Wild cucumber (PI 183967)	carcpiB0730
Carg15464	Cucsa.095050	Cucumber (Gy14) v1	carcgyB0775
Carg15464	CmaCh14G014590	Cucurbita maxima (Rimu)	carcmaB0972
Carg15464	CmaCh06G016700	Cucurbita maxima (Rimu)	carcmaB0974
Carg15464	CmoCh06G016630	Cucurbita moschata (Rifu)	carcmoB0947
Carg15464	CmoCh14G014960	Cucurbita moschata (Rifu)	carcmoB0946
Carg15464	Cp4.1LG08g06180	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15464	Cp4.1LG03g12830	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15464	CsGy4G002950	Cucumber (Gy14) v2	carcgybB0693
Carg15464	MELO3C017739.2	Melon (DHL92) v3.6.1	carmedB0707
Carg15464	CsaV3_4G003060	Cucumber (Chinese Long) v3	carcucB0733
Carg15464	Cla97C06G111490	Watermelon (97103) v2	carwmbB0721
Carg15464	Cla97C07G142440	Watermelon (97103) v2	carwmbB0722
Carg15464	Bhi12G002182	Wax gourd	carwgoB0813

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15464	Carg11600	Silver-seed gourd	carcarB013
Carg15464	Carg06611	Silver-seed gourd	carcarB142

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15464	Cucumber (Chinese Long) v2	carcuB0716
Carg15464	Bottle gourd (USVL1VR-Ls)	carlsiB634
Carg15464	Watermelon (Charleston Gray)	carwcgB0670
Carg15464	Watermelon (97103) v1	carwmB0690
Carg15464	Wax gourd	carwgoB0815