ClCG06G001330 (gene) Watermelon (Charleston Gray)

NameClCG06G001330
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionEnzyme of the cupin family protein
LocationCG_Chr06 : 1393107 .. 1393635 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAACACTTCTTGTGAGGCAAAAGTTTGTTCTCATCTCTCTAGTATGGCAAATAATGAAGAAGAAGGCAATAACAATCCCTCAACAAACAACCACCTCAAAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTTTCACAGCTCAACATCCACTGTTGGCCAAAGTAAGTATACCGTAATCCATCCGTTTAAGCTTTCGGGTTTTCTTTTTATTCATTAATTTTTTTTATTTTTATTAGATGGGGTTGTTCAGCAGGGAAATACCAGCTGAAATTTGAGGCAGAAGAGACTTGTTATTTAGTGAAAGGGAAAGTAAAAGCTTATCCAAAAGGAATTGATTCTTCTTCTTCTTGTGAGGAATACACTGAATTTGGAGCTGGGGATTTGGTCATTATTCCTAAAGGCCTTAGCTGCACTTGGGAGGTCTCTGTTGCTGTTGATAAATTCTACAAGTTTGAATCTCAATCTTAAATATTTTTAACTATAATTACCATTTTCCCATTCCTTTGTAAATAAATATTTTTT

mRNA sequence

CCCAAACACTTCTTGTGAGGCAAAAGTTTGTTCTCATCTCTCTAGTATGGCAAATAATGAAGAAGAAGGCAATAACAATCCCTCAACAAACAACCACCTCAAAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTTTCACAGCTCAACATCCACTGTTGGCCAAAATGGGGTTGTTCAGCAGGGAAATACCAGCTGAAATTTGAGGCAGAAGAGACTTGTTATTTAGTGAAAGGGAAAGTAAAAGCTTATCCAAAAGGAATTGATTCTTCTTCTTCTTGTGAGGAATACACTGAATTTGGAGCTGGGGATTTGGTCATTATTCCTAAAGGCCTTAGCTGCACTTGGGAGGTCTCTGTTGCTGTTGATAAATTCTACAAGTTTGAATCTCAATCTTAAATATTTTTAACTATAATTACCATTTTCCCATTCCTTTGTAAATAAATATTTTTT

Coding sequence (CDS)

ATGGCAAATAATGAAGAAGAAGGCAATAACAATCCCTCAACAAACAACCACCTCAAAATCATTGTAGAAAGAAACCCTTCTCAAGCCAAGCTTTCACAGCTCAACATCCACTGTTGGCCAAAATGGGGTTGTTCAGCAGGGAAATACCAGCTGAAATTTGAGGCAGAAGAGACTTGTTATTTAGTGAAAGGGAAAGTAAAAGCTTATCCAAAAGGAATTGATTCTTCTTCTTCTTGTGAGGAATACACTGAATTTGGAGCTGGGGATTTGGTCATTATTCCTAAAGGCCTTAGCTGCACTTGGGAGGTCTCTGTTGCTGTTGATAAATTCTACAAGTTTGAATCTCAATCTTAA

Protein sequence

MANNEEEGNNNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGIDSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS
BLAST of ClCG06G001330 vs. TrEMBL
Match: W9QZN5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015900 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-40
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 1

Query: 10  NNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAY 69
           +N S NN+L+IIVERNPS+A+LS+L I CWPKWGCS GKYQLKF+AEETCYL+KGKVKAY
Sbjct: 8   SNSSENNNLRIIVERNPSEARLSELKIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAY 67

Query: 70  PKGIDSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
           PKG        E+ EFGAGDLVIIPKG+SCTW+VS+AVDK+YKFES S
Sbjct: 68  PKG------SSEFVEFGAGDLVIIPKGISCTWDVSLAVDKYYKFESSS 109

BLAST of ClCG06G001330 vs. TrEMBL
Match: A0A058ZV10_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01055 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-40
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1

Query: 1   MANNEEEGNNNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCY 60
           MA++    +++ S+ N L+I+VER+P ++KLS+LNI CWPKWGC  GKYQLKF+AEETCY
Sbjct: 1   MASSASTPSSSSSSANDLRILVERDPPESKLSELNIKCWPKWGCPPGKYQLKFDAEETCY 60

Query: 61  LVKGKVKAYPKGIDSS------SSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 118
           LVKGKVK YP+G  SS      SS +++ EFGAGDLVIIPKGLSCTW+VSVAVDK+YKFE
Sbjct: 61  LVKGKVKVYPRGSSSSPSSASASSEDQFVEFGAGDLVIIPKGLSCTWDVSVAVDKYYKFE 120

BLAST of ClCG06G001330 vs. TrEMBL
Match: I1JPA0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G168900 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 1

Query: 14  TNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGI 73
           +N++L+I +ERNPSQ++L++LNI CWPKWGCS GKYQLKF+AEETCYLVKGKVKAYPKG 
Sbjct: 5   SNSNLRITIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLVKGKVKAYPKG- 64

Query: 74  DSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
                  E+ EFGAGDLV IPKGLSCTW+VSVAVDK+YKFES S
Sbjct: 65  -----SSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESNS 102

BLAST of ClCG06G001330 vs. TrEMBL
Match: A0A0B2PNV2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016498 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-39
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 1

Query: 14  TNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGI 73
           +N++L+I +ERNPSQ++L++LNI CWPKWGCS GKYQLKF+AEETCYLVKGKVKAYPKG 
Sbjct: 5   SNSNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLVKGKVKAYPKG- 64

Query: 74  DSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
                  E+ EFGAGDLV IPKGLSCTW+VSVAVDK+YKFES S
Sbjct: 65  -----SSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESNS 102

BLAST of ClCG06G001330 vs. TrEMBL
Match: A0A061DW96_THECC (RmlC-like cupins superfamily protein OS=Theobroma cacao GN=TCM_003844 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 1

Query: 15  NNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGID 74
           +N+L+I+VERNPS+++LS+LNI CWPKWGCS GKYQLKF+AEETCYL+KGKV+AYPKG  
Sbjct: 3   DNNLRIVVERNPSESRLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVRAYPKG-- 62

Query: 75  SSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
                 E+ EFGAGDLVIIPKGLSCTW+VSVAVDK YKFES S
Sbjct: 63  ----SSEFVEFGAGDLVIIPKGLSCTWDVSVAVDKHYKFESCS 99

BLAST of ClCG06G001330 vs. TAIR10
Match: AT4G28703.1 (AT4G28703.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 134.8 bits (338), Expect = 3.4e-32
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 19  KIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGIDSSSS 78
           +IIVE+NPSQA+L +L    WPKWGCS GKY LK+EAEE CY+++GKVK YPK   SSSS
Sbjct: 7   RIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSSSS 66

Query: 79  CEEY---TEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFES 116
             E     EFGAGD+V  PKGLSCTW+VS++VDK Y F S
Sbjct: 67  DAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIFLS 106

BLAST of ClCG06G001330 vs. TAIR10
Match: AT3G04300.1 (AT3G04300.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 3.8e-31
Identity = 59/97 (60.82%), Postives = 67/97 (69.07%), Query Frame = 1

Query: 18  LKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGIDSSS 77
           + I++E NPS  +LS L +  WPKW C  GKY L FE  ETCYLVKGKVK YPKG     
Sbjct: 1   MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKG----- 60

Query: 78  SCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 115
              E+ EFGAGDLV IPKGLSCTW+VS+ +DK YKF+
Sbjct: 61  -SSEFVEFGAGDLVTIPKGLSCTWDVSLFIDKHYKFD 91

BLAST of ClCG06G001330 vs. TAIR10
Match: AT4G10300.1 (AT4G10300.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-27
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 1

Query: 18  LKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPKGIDSSS 77
           L I +E+NP ++KL+QL +  WPKWGC   K+   + A+ETCYL++GKVK YP G D   
Sbjct: 44  LGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSD--- 103

Query: 78  SCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 115
              E  E  AGD V+ PKG+SCTW+VSVAVDK Y+FE
Sbjct: 104 ---EGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134

BLAST of ClCG06G001330 vs. TAIR10
Match: AT4G10280.1 (AT4G10280.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1

Query: 12  PSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYPK 71
           P+  + +KI+  R  S  KL+QL +  WPKW  +  K+  +F+  ET Y ++GKVK    
Sbjct: 42  PTEIHGVKIL--RQASDTKLAQLGVASWPKWEGAPSKFPWEFKKTETIYFMEGKVKVNVD 101

Query: 72  GIDSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 115
           G D     EE  E G GD+V+ PK +   WE++ AV K Y  E
Sbjct: 102 GYDEE---EETFEIGKGDVVVFPKDMKVVWEITEAVKKQYSLE 139

BLAST of ClCG06G001330 vs. NCBI nr
Match: gi|659120045|ref|XP_008459983.1| (PREDICTED: uncharacterized protein LOC103498932 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 109/123 (88.62%), Postives = 110/123 (89.43%), Query Frame = 1

Query: 4   NEEEGNNN----PSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETC 63
           NEE GNNN    PSTNN LKIIVERNPSQAKLSQLNIH WPKWGCSAGKYQLKFEAEETC
Sbjct: 3   NEEGGNNNNHNNPSTNNSLKIIVERNPSQAKLSQLNIHRWPKWGCSAGKYQLKFEAEETC 62

Query: 64  YLVKGKVKAYPKGIDSSSS-----CEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 118
           YLVKGKVKAYPKGIDSSSS     CEEY EFGAGDLVIIPKGLSCTW+VSVAVDKFYKFE
Sbjct: 63  YLVKGKVKAYPKGIDSSSSSSSSCCEEYIEFGAGDLVIIPKGLSCTWDVSVAVDKFYKFE 122

BLAST of ClCG06G001330 vs. NCBI nr
Match: gi|449445646|ref|XP_004140583.1| (PREDICTED: uncharacterized protein LOC101208389 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 107/119 (89.92%), Postives = 108/119 (90.76%), Query Frame = 1

Query: 4   NEEEGNNNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVK 63
           NEEEGNNN   NN LKIIVERNPSQAKLSQLNIH WPKWGCSAGKYQLKFEAEETCYLVK
Sbjct: 3   NEEEGNNN--NNNSLKIIVERNPSQAKLSQLNIHRWPKWGCSAGKYQLKFEAEETCYLVK 62

Query: 64  GKVKAYPKGIDSSSS-----CEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
           GKVKAYPKGIDSSSS     CEEY EFGAGDLVIIPKGLSCTW+VSVAVDKFYKFESQS
Sbjct: 63  GKVKAYPKGIDSSSSSSSSCCEEYIEFGAGDLVIIPKGLSCTWDVSVAVDKFYKFESQS 119

BLAST of ClCG06G001330 vs. NCBI nr
Match: gi|703081972|ref|XP_010091831.1| (hypothetical protein L484_015900 [Morus notabilis])

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 1

Query: 10  NNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAY 69
           +N S NN+L+IIVERNPS+A+LS+L I CWPKWGCS GKYQLKF+AEETCYL+KGKVKAY
Sbjct: 8   SNSSENNNLRIIVERNPSEARLSELKIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAY 67

Query: 70  PKGIDSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
           PKG        E+ EFGAGDLVIIPKG+SCTW+VS+AVDK+YKFES S
Sbjct: 68  PKG------SSEFVEFGAGDLVIIPKGISCTWDVSLAVDKYYKFESSS 109

BLAST of ClCG06G001330 vs. NCBI nr
Match: gi|702509059|ref|XP_010040360.1| (PREDICTED: uncharacterized protein LOC104429154 [Eucalyptus grandis])

HSP 1 Score: 171.8 bits (434), Expect = 7.1e-40
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1

Query: 1   MANNEEEGNNNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCY 60
           MA++    +++ S+ N L+I+VER+P ++KLS+LNI CWPKWGC  GKYQLKF+AEETCY
Sbjct: 1   MASSASTPSSSSSSANDLRILVERDPPESKLSELNIKCWPKWGCPPGKYQLKFDAEETCY 60

Query: 61  LVKGKVKAYPKGIDSS------SSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFE 118
           LVKGKVK YP+G  SS      SS +++ EFGAGDLVIIPKGLSCTW+VSVAVDK+YKFE
Sbjct: 61  LVKGKVKVYPRGSSSSPSSASASSEDQFVEFGAGDLVIIPKGLSCTWDVSVAVDKYYKFE 120

BLAST of ClCG06G001330 vs. NCBI nr
Match: gi|1012180695|ref|XP_015968097.1| (PREDICTED: uncharacterized protein LOC107491707 [Arachis duranensis])

HSP 1 Score: 171.8 bits (434), Expect = 7.1e-40
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 1

Query: 10  NNPSTNNHLKIIVERNPSQAKLSQLNIHCWPKWGCSAGKYQLKFEAEETCYLVKGKVKAY 69
           +N S +N+L+I +ERNPSQ++LS+LNI CWPKWGCS GKYQLKF+AEETCYL+KGKVKAY
Sbjct: 4   DNSSNSNNLRITIERNPSQSRLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAY 63

Query: 70  PKGIDSSSSCEEYTEFGAGDLVIIPKGLSCTWEVSVAVDKFYKFESQS 118
           PKG        ++ EFGAGDLV IPKGLSCTW+VSVAVDK+YKFES+S
Sbjct: 64  PKG------SSDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESES 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
W9QZN5_9ROSA1.3e-4074.07Uncharacterized protein OS=Morus notabilis GN=L484_015900 PE=4 SV=1[more]
A0A058ZV10_EUCGR5.0e-4065.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01055 PE=4 SV=1[more]
I1JPA0_SOYBN4.2e-3974.04Uncharacterized protein OS=Glycine max GN=GLYMA_03G168900 PE=4 SV=1[more]
A0A0B2PNV2_GLYSO5.5e-3974.04Uncharacterized protein OS=Glycine soja GN=glysoja_016498 PE=4 SV=1[more]
A0A061DW96_THECC1.2e-3874.76RmlC-like cupins superfamily protein OS=Theobroma cacao GN=TCM_003844 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G28703.13.4e-3264.00 RmlC-like cupins superfamily protein[more]
AT3G04300.13.8e-3160.82 RmlC-like cupins superfamily protein[more]
AT4G10300.11.9e-2754.64 RmlC-like cupins superfamily protein[more]
AT4G10280.11.4e-1438.83 RmlC-like cupins superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659120045|ref|XP_008459983.1|1.9e-5388.62PREDICTED: uncharacterized protein LOC103498932 [Cucumis melo][more]
gi|449445646|ref|XP_004140583.1|1.3e-5289.92PREDICTED: uncharacterized protein LOC101208389 [Cucumis sativus][more]
gi|703081972|ref|XP_010091831.1|1.9e-4074.07hypothetical protein L484_015900 [Morus notabilis][more]
gi|702509059|ref|XP_010040360.1|7.1e-4065.85PREDICTED: uncharacterized protein LOC104429154 [Eucalyptus grandis][more]
gi|1012180695|ref|XP_015968097.1|7.1e-4072.22PREDICTED: uncharacterized protein LOC107491707 [Arachis duranensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008579DUF861_Cupin_3
IPR011051RmlC_Cupin_sf
IPR014710RmlC-like_jellyroll
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G001330.1ClCG06G001330.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 35..111
score: 5.9
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 30..111
score: 4.1
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 17..113
score: 3.5
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 15..117
score: 2.5
NoneNo IPR availablePANTHERPTHR33271:SF3CUPIN DOMAIN-CONTAINING PROTEINcoord: 15..117
score: 2.5