Carg04885 (gene) Silver-seed gourd

NameCarg04885
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRmlC-like cupins superfamily protein
LocationCucurbita_argyrosperma_scaffold_060 : 30309 .. 30885 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCAAAAGATTCCTTTTCTCTTCTTTTTCTTGTTGTTTCTCTATAAAAAACCCACAAATCCCACCCCTTCTCTTTTAATTTCCCCTAAAAAAATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTATGCTCAACATCCAGAGCTGGCCAAAGTAAGTATATTGTAATCTATCAGTTTAAGCTTACACGTAAGTTCGAGCCTTTGGCCTTTGGGTTCGAGCTAGGGTGGGTGATGGTTGAGTAATTTTTGTGTAGGTGGGGCTGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCCGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAATTTGCTATTACCTCCATTTTCATTCTTTCCCCCCCCCC

mRNA sequence

AGATCAAAAGATTCCTTTTCTCTTCTTTTTCTTGTTGTTTCTCTATAAAAAACCCACAAATCCCACCCCTTCTCTTTTAATTTCCCCTAAAAAAATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTATGCTCAACATCCAGAGCTGGCCAAAGTGGGGCTGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCCGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAATTTGCTATTACCTCCATTTTCATTCTTTCCCCCCCCCC

Coding sequence (CDS)

ATGGCCAATGAAGAAGGAAACAGTAACAATCCTTCAACAAACAACCTCAGAATCATCGTAGAAAGGAACCCTTCTCAAGCCAAGCTTTCTATGCTCAACATCCAGAGCTGGCCAAAGTGGGGCTGCTCGGCGGGGAAATACCAGCTGAAGTTCGAGGCAGAAGAGACGTGCTACTTGGTGAAGGGAAAAGTGAAGGCTTATGCCAAAGGATCGGCCGAGACTGAATATACAGAATTCGGGGCTGGTGATTTGGTCACCATTCCTAAAGGCCTTAGCTGCACTTGGGATGTTTCTGTTGCTGTTGATAAGTTCTACAAGTTTGAATCTCCATCTTCATCTTAA

Protein sequence

MANEEGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
BLAST of Carg04885 vs. NCBI nr
Match: XP_022960185.1 (uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_023513548.1 uncharacterized protein LOC111778119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 3.2e-57
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPSQAKLS+LNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

BLAST of Carg04885 vs. NCBI nr
Match: XP_023005099.1 (uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005101.1 uncharacterized protein LOC111498188 [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 7.1e-57
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MANEEGNSNNPSTNNLRIIVERNPS+AKLS+LNIQSWPKWGCSAGKYQLKFEAEETCYLV
Sbjct: 1   MANEEGNSNNPSTNNLRIIVERNPSEAKLSLLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS
Sbjct: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 113

BLAST of Carg04885 vs. NCBI nr
Match: PON37134.1 (RmlC-like cupins superfamily protein [Parasponia andersonii])

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 0

Query: 16  LRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           LRIIVE+NPS+AKLS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKVKAY KGS+ +E
Sbjct: 21  LRIIVEKNPSEAKLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSSSE 80

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           + EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S++
Sbjct: 81  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSSTT 118

BLAST of Carg04885 vs. NCBI nr
Match: XP_015968097.1 (uncharacterized protein LOC107491707 [Arachis duranensis] >XP_016207597.1 uncharacterized protein LOC107648111 [Arachis ipaensis] >XP_025603150.1 uncharacterized protein LOC112695144 [Arachis hypogaea] >XP_025663363.1 uncharacterized protein LOC112758808 [Arachis hypogaea])

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 0

Query: 5   EGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKV 64
           E NS+N  +NNLRI +ERNPSQ++LS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKV
Sbjct: 3   EDNSSN--SNNLRITIERNPSQSRLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKV 62

Query: 65  KAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KAY KGS  +++ EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES SSS
Sbjct: 63  KAYPKGS--SDFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESESSS 107

BLAST of Carg04885 vs. NCBI nr
Match: PON54578.1 (RmlC-like cupins superfamily protein [Trema orientalis])

HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40
Identity = 79/98 (80.61%), Postives = 91/98 (92.86%), Query Frame = 0

Query: 16  LRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           LRIIVE+NPS+A+LS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKVKAY KGS+ +E
Sbjct: 20  LRIIVEKNPSEARLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSSSE 79

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           + EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S++
Sbjct: 80  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSSTT 117

BLAST of Carg04885 vs. TAIR10
Match: AT3G04300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 2.7e-34
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 0

Query: 16  LRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           + I++E NPS  +LS L + SWPKW C  GKY L FE  ETCYLVKGKVK Y KGS  +E
Sbjct: 1   MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGS--SE 60

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSS 113
           + EFGAGDLVTIPKGLSCTWDVS+ +DK YKF+ P+S
Sbjct: 61  FVEFGAGDLVTIPKGLSCTWDVSLFIDKHYKFDPPTS 95

BLAST of Carg04885 vs. TAIR10
Match: AT4G28703.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-32
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0

Query: 15  NLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAK----- 74
           N RIIVE+NPSQA+L  L  +SWPKWGCS GKY LK+EAEE CY+++GKVK Y K     
Sbjct: 5   NPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSS 64

Query: 75  -GSAETEY-TEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFES 110
              AE E+  EFGAGD+VT PKGLSCTWDVS++VDK Y F S
Sbjct: 65  SSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHYIFLS 106

BLAST of Carg04885 vs. TAIR10
Match: AT4G10300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 6.4e-28
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 12  STNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGS 71
           ST  L I +E+NP ++KL+ L ++SWPKWGC   K+   + A+ETCYL++GKVK Y  GS
Sbjct: 40  STEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGS 99

Query: 72  AETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFE 109
              E  E  AGD V  PKG+SCTWDVSVAVDK Y+FE
Sbjct: 100 --DEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHYQFE 134

BLAST of Carg04885 vs. TrEMBL
Match: tr|A0A2P5AKT6|A0A2P5AKT6_PARAD (RmlC-like cupins superfamily protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322550 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 0

Query: 16  LRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           LRIIVE+NPS+AKLS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKVKAY KGS+ +E
Sbjct: 21  LRIIVEKNPSEAKLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSSSE 80

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           + EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S++
Sbjct: 81  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSSTT 118

BLAST of Carg04885 vs. TrEMBL
Match: tr|A0A2P5C0K2|A0A2P5C0K2_9ROSA (RmlC-like cupins superfamily protein OS=Trema orientalis OX=63057 GN=TorRG33x02_301930 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 79/98 (80.61%), Postives = 91/98 (92.86%), Query Frame = 0

Query: 16  LRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAETE 75
           LRIIVE+NPS+A+LS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKVKAY KGS+ +E
Sbjct: 20  LRIIVEKNPSEARLSELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSSSE 79

Query: 76  YTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           + EFGAGDLVTIPKGLSCTWDVSVAVDK+YKFES S++
Sbjct: 80  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESSSTT 117

BLAST of Carg04885 vs. TrEMBL
Match: tr|W9QZN5|W9QZN5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015900 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 0

Query: 1   MANEEGNSNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLV 60
           MA+    SN+   NNLRIIVERNPS+A+LS L I+ WPKWGCS GKYQLKF+AEETCYL+
Sbjct: 1   MASSSSISNSSENNNLRIIVERNPSEARLSELKIKCWPKWGCSPGKYQLKFDAEETCYLL 60

Query: 61  KGKVKAYAKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           KGKVKAY KGS  +E+ EFGAGDLV IPKG+SCTWDVS+AVDK+YKFES SS+
Sbjct: 61  KGKVKAYPKGS--SEFVEFGAGDLVIIPKGISCTWDVSLAVDKYYKFESSSST 111

BLAST of Carg04885 vs. TrEMBL
Match: tr|A0A2I4HRP8|A0A2I4HRP8_9ROSI (uncharacterized protein LOC109020765 OS=Juglans regia OX=51240 GN=LOC109020765 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 8   SNNPSTNNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAY 67
           SN  S++NLRI VERNPS+++L+ LNI+ WPKWGCS GKYQLKF+AEETCYLV+GKVKAY
Sbjct: 5   SNPSSSHNLRITVERNPSESRLTELNIKCWPKWGCSPGKYQLKFDAEETCYLVRGKVKAY 64

Query: 68  AKGSAETEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
            KGS+ +E+ EFGAGDLVTIPKGLSCTWDVSVAVDK YKFES SSS
Sbjct: 65  PKGSS-SEFVEFGAGDLVTIPKGLSCTWDVSVAVDKHYKFESNSSS 109

BLAST of Carg04885 vs. TrEMBL
Match: tr|A0A1R3FUQ3|A0A1R3FUQ3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30911 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 81/100 (81.00%), Postives = 90/100 (90.00%), Query Frame = 0

Query: 14  NNLRIIVERNPSQAKLSMLNIQSWPKWGCSAGKYQLKFEAEETCYLVKGKVKAYAKGSAE 73
           NNLRI+VERNPS++KLS LNI+ WPKWGCS GKYQLKF+AEETCYL+KGKV+AY KGS  
Sbjct: 4   NNLRIVVERNPSESKLSELNIKGWPKWGCSPGKYQLKFDAEETCYLLKGKVRAYPKGS-- 63

Query: 74  TEYTEFGAGDLVTIPKGLSCTWDVSVAVDKFYKFESPSSS 114
           +E+ EFGAGDLV IPKGLSCTWDVSVAVDK YKFES SSS
Sbjct: 64  SEFVEFGAGDLVIIPKGLSCTWDVSVAVDKHYKFESSSSS 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022960185.13.2e-5799.12uncharacterized protein LOC111460998 [Cucurbita moschata] >XP_022960186.1 unchar... [more]
XP_023005099.17.1e-5798.23uncharacterized protein LOC111498188 [Cucurbita maxima] >XP_023005100.1 uncharac... [more]
PON37134.12.1e-4081.63RmlC-like cupins superfamily protein [Parasponia andersonii][more]
XP_015968097.14.6e-4077.98uncharacterized protein LOC107491707 [Arachis duranensis] >XP_016207597.1 unchar... [more]
PON54578.14.6e-4080.61RmlC-like cupins superfamily protein [Trema orientalis][more]
Match NameE-valueIdentityDescription
AT3G04300.12.7e-3465.98RmlC-like cupins superfamily protein[more]
AT4G28703.12.5e-3264.71RmlC-like cupins superfamily protein[more]
AT4G10300.16.4e-2856.70RmlC-like cupins superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P5AKT6|A0A2P5AKT6_PARAD1.4e-4081.63RmlC-like cupins superfamily protein OS=Parasponia andersonii OX=3476 GN=PanWU01... [more]
tr|A0A2P5C0K2|A0A2P5C0K2_9ROSA3.1e-4080.61RmlC-like cupins superfamily protein OS=Trema orientalis OX=63057 GN=TorRG33x02_... [more]
tr|W9QZN5|W9QZN5_9ROSA1.2e-3973.45Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015900 PE=4 SV=1[more]
tr|A0A2I4HRP8|A0A2I4HRP8_9ROSI1.5e-3978.30uncharacterized protein LOC109020765 OS=Juglans regia OX=51240 GN=LOC109020765 P... [more]
tr|A0A1R3FUQ3|A0A1R3FUQ3_COCAP2.6e-3981.00Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30911 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin_sf
IPR008579DUF861_Cupin_3
IPR014710RmlC-like_jellyroll
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04885-RACarg04885-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 7..107
e-value: 4.7E-32
score: 111.7
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 33..105
e-value: 1.5E-25
score: 88.6
NoneNo IPR availablePANTHERPTHR33271:SF3CUPIN DOMAIN-CONTAINING PROTEINcoord: 10..109
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 10..109
IPR011051RmlC-like cupin domain superfamilySUPERFAMILYSSF51182RmlC-like cupinscoord: 28..105