ClCG05G006080 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006080
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein pof4, putative
Location	CG_Chr05 : 6048344 .. 6048945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGGTATCTAATAAGTTTTTCTACTCAACTTTGTTCTATTGAGTTAGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

mRNA sequence

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

Coding sequence (CDS)

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

Protein sequence

MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

Homology

[Close]

BLAST of ClCG05G006080 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +HIEN SKGRDLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKMK  
Sbjct: 49  LHIENCSKGRDLTPITNKLWKNFYERKFGKDDVDIVV-----KNETFKWMDLYVAKMKEL 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKKQRFKGKSTEFGCNTTESKIL 120
           E +AKKIE R IQ++QKEKA+K+SRQI+FCG   S ++ K     ++  F  NTT+S  L
Sbjct: 109 ENRAKKIEDRIIQSYQKEKARKQSRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTL 168

Query: 121 NKSKREVQIYEVPSTNDNKKKQS 143
            K+KRE+ + +V ST+ NK+  S
Sbjct: 169 KKAKRELHVPKV-STSSNKEWNS 185

[Close]

BLAST of ClCG05G006080 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.5e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.2e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVEKSTKGRDLSSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSK 124
           K+K
Sbjct: 181 KAK 183

[Close]

BLAST of ClCG05G006080 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MHIE S+ GRDL+SVTDKLWK FYEK+FGE + D VI+RM+ KK SF+W Q+YEAK+K  
Sbjct: 50  MHIEKSTVGRDLSSVTDKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDI 109

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKS-TEFGCNTTESKIL 120
            +   K+  R  Q ++KE  +K+SRQ+  C    P + K+ F G S   +  +  +S ++
Sbjct: 110 AEAENKLAARIRQLYKKEDDRKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLM 169

Query: 121 NKSK------REVQIYEVPSTNDNKKKQSFGGTIKP 150
            K+K      REVQ       N  ++  S    +KP
Sbjct: 170 KKAKMDFLKSREVQNIAAMKKNALQRNSSSSSMMKP 205

[Close]

BLAST of ClCG05G006080 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15
Identity = 39/123 (31.71%), Postives = 72/123 (58.54%), Query Frame = 1


Query: 2   HIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSN 61
           HIE+++   DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K+ + 
Sbjct: 53  HIEDATDDTDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAV 112

Query: 62  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 121
           ++K K++  R  + ++ E  +K+SRQ   C   +P +K+  +   ++ +     +S I+ 
Sbjct: 113 QQKEKELGGRLKERYKDENERKQSRQTKVC-SKAPPSKRPFWGNSASGYNLGHVKSNIMK 172

Query: 122 KSK 124
           K+K
Sbjct: 173 KAK 174

[Close]

BLAST of ClCG05G006080 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +HIEN SKGRDLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKMK  
Sbjct: 49  LHIENCSKGRDLTPITNKLWKNFYERKFGKDDVDIVV-----KNETFKWMDLYVAKMKEL 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKKQRFKGKSTEFGCNTTESKIL 120
           E +AKKIE R IQ++QKEKA+K+SRQI+FCG   S ++ K     ++  F  NTT+S  L
Sbjct: 109 ENRAKKIEDRIIQSYQKEKARKQSRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTL 168

Query: 121 NKSKREVQIYEVPSTNDNKKKQS 143
            K+KRE+ + +V ST+ NK+  S
Sbjct: 169 KKAKRELHVPKV-STSSNKEWNS 185

[Close]

BLAST of ClCG05G006080 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-26
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDI 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           EK   K   R  Q++ KE A+K+SRQI  C    P + K+ F G    +    T++KIL 
Sbjct: 109 EKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILK 168

Query: 121 KSKREV-QIYEVPS-----TNDNKKKQSFGGTIKPRRNTKTSETWKK 162
           K+K EV Q  E+ +      N  +K      T KP  + + S +  K
Sbjct: 169 KAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSK 215

[Close]

BLAST of ClCG05G006080 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K                 
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQK----------------- 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
                ++  R+IQ ++ +    E  +       +    KQ +  ++              
Sbjct: 109 -----RVAFRWIQLYEAKMEDIEKNE-----SKAADRIKQSYLKENAR------------ 168

Query: 121 KSKREVQIYEVPSTNDNKKKQSFGGTIKPRR--NTKTSETWKKAKREALQCIKMKNLIAF 180
           K  R++QI      + NK+  SFGG+       NTK ++  KKAK E LQ  +MKN+ A+
Sbjct: 169 KQSRQIQICSKVPPSSNKR--SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAW 193

Query: 181 QKKLMQK 186
           ++  +QK
Sbjct: 229 RRNAVQK 193

HSP 2 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDI 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           EK   K   R  Q++ KE A+K+SRQI  C    P + K+ F G    +    T++KIL 
Sbjct: 109 EKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILK 168

Query: 121 KSKREV 127
           K+K EV
Sbjct: 169 KAKIEV 174

[Close]

BLAST of ClCG05G006080 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K                 
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQK----------------- 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
                ++  R+IQ ++ +    E  +       +    KQ +  ++              
Sbjct: 109 -----RVAFRWIQLYEAKMQDIEKNE-----SKAADRIKQSYLKENAR------------ 168

Query: 121 KSKREVQIYEVPSTNDNKKKQSFGGTIKPRR--NTKTSETWKKAKREALQCIKMKNLIAF 180
           K  R++QI      + NK+  SFGG+       NTK ++  KKAK E LQ  +MKN+ A+
Sbjct: 169 KQSRQIQICSKVPPSSNKR--SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAW 193

Query: 181 QKKLMQK 186
           ++  +QK
Sbjct: 229 RRNAVQK 193

HSP 2 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080 vs. NCBI nr
Match: gi|728807916|gb|KHF97908.1| (Elongin-A [Gossypium arboreum])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVEKSTKGRDLSSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

The following BLAST results are available for this feature:

BLAST of ClCG05G006080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	3.0e-31	52.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A0D2RUW6_GOSRA	5.5e-25	44.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A0A0B0MEQ4_GOSAR	7.2e-25	44.68	Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1	[more]
A0A0D2NJM7_GOSRA	1.2e-24	47.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A9P8K1_POPTR	1.6e-24	42.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1	[more]

BLAST of ClCG05G006080 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	4.6e-15	31.71	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	4.3e-31	52.45	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	5.4e-26	42.51	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	3.8e-11	32.09	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	3.8e-11	32.09	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|728807916\|gb\|KHF97908.1\|	1.0e-24	44.68	Elongin-A [Gossypium arboreum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G006080.1	ClCG05G006080.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G006080	Cla97C05G087580	Watermelon (97103) v2	wcgwmbB229
ClCG05G006080	Bhi01G000715	Wax gourd	wcgwgoB426
ClCG05G006080	Cp4.1LG03g11510	Cucurbita pepo (Zucchini)	cpewcgB559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G006080	Silver-seed gourd	carwcgB0072
ClCG05G006080	Silver-seed gourd	carwcgB0588
ClCG05G006080	Silver-seed gourd	carwcgB0680
ClCG05G006080	Silver-seed gourd	carwcgB0807
ClCG05G006080	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G006080	Watermelon (97103) v2	wcgwmbB238
ClCG05G006080	Wax gourd	wcgwgoB418
ClCG05G006080	Watermelon (Charleston Gray)	wcgwcgB160
ClCG05G006080	Cucumber (Gy14) v1	cgywcgB451
ClCG05G006080	Cucurbita maxima (Rimu)	cmawcgB003
ClCG05G006080	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G006080	Cucurbita maxima (Rimu)	cmawcgB320
ClCG05G006080	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G006080	Cucurbita maxima (Rimu)	cmawcgB796
ClCG05G006080	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G006080	Cucurbita moschata (Rifu)	cmowcgB316
ClCG05G006080	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G006080	Cucurbita moschata (Rifu)	cmowcgB792
ClCG05G006080	Wild cucumber (PI 183967)	cpiwcgB069
ClCG05G006080	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G006080	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G006080	Melon (DHL92) v3.5.1	mewcgB121
ClCG05G006080	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G006080	Watermelon (97103) v1	wcgwmB286
ClCG05G006080	Watermelon (97103) v1	wcgwmB311
ClCG05G006080	Cucurbita pepo (Zucchini)	cpewcgB139
ClCG05G006080	Cucurbita pepo (Zucchini)	cpewcgB291
ClCG05G006080	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G006080	Bottle gourd (USVL1VR-Ls)	lsiwcgB017
ClCG05G006080	Bottle gourd (USVL1VR-Ls)	lsiwcgB333
ClCG05G006080	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G006080	Melon (DHL92) v3.6.1	medwcgB115
ClCG05G006080	Melon (DHL92) v3.6.1	medwcgB416