Cp4.1LG03g11510 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g11510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA polymerase II transcription factor SIII (Elongin) subunit A
LocationCp4.1LG03 : 11015458 .. 11017794 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACTTACTTCAAGCTTAAACTAGGGCTAAACCTGTGCCCTCTCGAGTCTTGCCAAACAATGTCTGAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGGAGATGTTGGCCAAATCGATCTAAATTTCCTTGAACATATTTTGCCGCATTGCACCGTCGACCAACTGATGCATATAGAGAACTTTTCGAAAGGAAGAGATCTCACTCCAATAACAAACAAATTATGGAAAACTTTCTACGAAAAAAAGTTCGGTAAGGATGGTGTCAACTGTGTTCTTGAAAGGATGAAGCATAAGGAATCGTTTAGATGGAAGCAAATGTACGAGTTGAAGATGAAGGAATTAGAAGAGAAGGCGGTAGAAATTGAGAAACGATATATACAGAACTGTCGAAACGAAAAAGCTCGAAAACAGAGCCGTCAAGTAAAGATATGTGAGATATCGTCGCCGAGTAAGGTTTTGAAGAAGCCAAAAGTACAAACCAAAATTTGTCAAGTTTTATCTGCAAACAATAATAAACGAAGCTACCCGAGAGTAACAAGCAAGATACTGAAAAAAGCCAGAAAAGAAACACGACAGAGTATAGAGACGAAGAATTTGATAGCTTTTCGTAGAAATGCAATTCAAAAGTAGTAATTTTCTTGAATAACTGATGTAATAAAATTGATAACTTTTGGTTTAAATTTTAAGAATATGGTTTATGATAGGTTATTGGATATGATTTATACTTCAATTTAAGTTATTTTAAACAAACGCATATAAGGTTCAATGTTCATACATTTGAGTAATTACTTTTAAATGAATTTTTTTGAAACTCGACTTTAAAATTAATTTTACTTTCCATCTAAATATATAATTTTGTCAAAAGTTGTTCAAAATATAAAATTCTATTAAAATTGCTTTGAGTTTCCCCAAAAGGCCTCACACCAATGAAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCATCCAACACCTCCCCTCGAACAAAGTGCGCCTCCCCTTAATTGAGGCTCGACTTCTTGGAGTCTTAGTCATTTTTTACTGCCTTCGAGGATGCTTGACTCCTTTTCTTTTGGAGTTCTTTGTTCGATATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATTGCTTTGATACCATGTTAGACGAACACAACTCTCTACAATGGTATGATACCATGTACGACTAAGTTTCATGTGGATTGCATGTACGACTAAGTTTCATGTTAGACGAACACAACTCTCCACAATGGTATGATACCATGTACGACTAAGTTTCATGTGGATTGCACTTTATTCATGGCTTATTGTGTCGTTGATGCAGTTCCGCAACGAATCGATTGATTACTTCCAAGGATCATGCTTCCGTCCAGATCAACATTGAGCATGGCTTGTTCTTCTTCTGCTGGCTGTGTTTTTATATACAACAACAAACAAGTTTATTCATCATCTGTGATTGTTGTTGCCTGTTACATTGTTAAGCACTTAGATTATGAGCTGCTGTCCTAATTGAAGCTAATTTGACTCAAAACTAAAGAACACAGAAGATTTATAGTTAGACTAAATCATAGCTCAAGTAAAGAAGATGAGAAGAAAGGGTAGAAGCGTTCAAGGCCGACGCTAGAAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGTTTCCCCTCAAAGCTTCTAAAACGCTTTGTTCTCGTCCCCCAATCGATGTGGGATCTGACAATCTACCCTCCTTCGAGGCCAACAATCTCGCTGGCACTTGTTTCTTTCTTCAATCGATGTGGGACTCCTCAATCCACTCCCCCTTTGGGGCCAGTGTCCTTGCTGGTACACTACCTCATGTCCACCCCCTTCAGGGTTCAGCCTCTTTGCTGTCACATCGTTCAAAGTCATTCGGTGTCGTGCTCTGATACCATTTGTAACAGCCCAAACCCACCACTAATAGATATTGTCTTCTTTGGGCTTTCCCCTCCAGCCATCCCCTCAAGTTAAAGAGAGATTTCCACACCCTTTTAAAGAATGTTTTGTTCTCTTCCCCATCGACGTGGGATCTCACCAAAATTGAGTCTCAAATGGCCTTTTTGTGATCGGCCTTTGCCCTCTAGCTTCCTCTTAAACGGTGAGAGCAGCCATTTTTGTAAGGATAAGCAGCCATTTTATGGGCCATGAAAATGTGGAGGCTTCTACTCACTTGAACTATTCAACTCGAACCGAGTTAGATTTTTTTTTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGATCAAC

mRNA sequence

TCACTTACTTCAAGCTTAAACTAGGGCTAAACCTGTGCCCTCTCGAGTCTTGCCAAACAATGTCTGAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGGAGATGTTGGCCAAATCGATCTAAATTTCCTTGAACATATTTTGCCGCATTGCACCGTCGACCAACTGATGCATATAGAGAACTTTTCGAAAGGAAGAGATCTCACTCCAATAACAAACAAATTATGGAAAACTTTCTACGAAAAAAAGTTCGGTAAGGATGGTGTCAACTGTGTTCTTGAAAGGATGAAGCATAAGGAATCGTTTAGATGGAAGCAAATGTACGAGTTGAAGATGAAGGAATTAGAAGAGAAGGCGGTAGAAATTGAGAAACGATATATACAGAACTGTCGAAACGAAAAAGCTCGAAAACAGAGCCGTCAAGTAAAGATATGTGAGATATCGTCGCCGAGTAAGATCAAC

Coding sequence (CDS)

ATGTCTGAACAAGTAAACAAAGCCATAGATAGCCTGAGATTTCTCGGAGATGTTGGCCAAATCGATCTAAATTTCCTTGAACATATTTTGCCGCATTGCACCGTCGACCAACTGATGCATATAGAGAACTTTTCGAAAGGAAGAGATCTCACTCCAATAACAAACAAATTATGGAAAACTTTCTACGAAAAAAAGTTCGGTAAGGATGGTGTCAACTGTGTTCTTGAAAGGATGAAGCATAAGGAATCGTTTAGATGGAAGCAAATGTACGAGTTGAAGATGAAGGAATTAGAAGAGAAGGCGGTAGAAATTGAGAAACGATATATACAGAACTGTCGAAACGAAAAAGCTCGAAAACAGAGCCGTCAAGTAAAGATATGTGAGATATCGTCGCCGAGTAAGATCAAC

Protein sequence

MSEQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEKKFGKDGVNCVLERMKHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQVKICEISSPSKIN
Homology
[Close]
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-36
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 1 

Query: 1   MSEQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKT 60
           ++  VNKAIDS++FLGDVG  DL  LE IL HCT DQL+HIEN SKGRDLTPITNKLWK 
Sbjct: 11  LNSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKN 70

Query: 61  FYEKKFGKDGVNCVLERMKHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQ 120
           FYE+KFGKD V+ V++     E+F+W  +Y  KMKELE +A +IE R IQ+ + EKARKQ
Sbjct: 71  FYERKFGKDDVDIVVK----NETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 130

Query: 121 SRQVKIC 128
           SRQ+  C
Sbjct: 131 SRQIVFC 133

[Close]
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match: A0A0K9REH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080700 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 70/130 (53.85%), Postives = 95/130 (73.08%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           V  AID++R++GDVG  D + LEHILPHCTV+QLMHIEN +  RDL+P+T+KLWK FYE 
Sbjct: 27  VQTAIDNIRYIGDVGPTDSHLLEHILPHCTVEQLMHIENATSERDLSPVTDKLWKKFYEA 86

Query: 65  KFGKDGVNCVLERM-KHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FG   V  V+ER+ K K +F W+Q+Y+ K+KE+ E   E  +R  Q+ +NE ARKQSRQ
Sbjct: 87  EFGAKSVEVVVERVKKFKVTFNWRQLYQAKLKEINENVEESLERLTQSYKNESARKQSRQ 146

Query: 125 VKICEISSPS 134
           +++C    PS
Sbjct: 147 IQLCAKVPPS 156

[Close]
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match: A0A061DJY1_THECC (Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 70/130 (53.85%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           +  AID++R+LGDVG+ D + LE ILPHCT+DQL+H+E  +KGRDL+P+T+KLWK FYE 
Sbjct: 27  IRTAIDNVRYLGDVGETDSHLLERILPHCTMDQLIHVEKSTKGRDLSPVTDKLWKNFYEL 86

Query: 65  KFGKDGVNCVLERMKHKE-SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FG+   N V+ERMK K+ SFRW+Q+YE K+K+++E   +   R  Q  + E ARKQSRQ
Sbjct: 87  QFGRASTNLVIERMKLKKVSFRWRQLYEAKLKDVQEAENKAIDRLKQLYKKEDARKQSRQ 146

Query: 125 VKICEISSPS 134
           V++C    PS
Sbjct: 147 VQLCTKVPPS 156

[Close]
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match: F6H555_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-31
Identity = 72/130 (55.38%), Postives = 95/130 (73.08%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           +  AID++R+LGDVG+ D+N L+HILPHCTVDQLMHIE  ++ RDL+ +T+KLWK FYEK
Sbjct: 77  IRTAIDNVRYLGDVGETDINLLDHILPHCTVDQLMHIEKCTEERDLSEVTDKLWKKFYEK 136

Query: 65  KFGKDGVNCVLERMKHKE-SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FG    N V+ERMK K+ SF+W ++YE K+K+ +E   +   R  Q  + E ARKQSRQ
Sbjct: 137 EFGVKSTNLVVERMKLKKVSFKWSKLYEAKLKDRDEAQKKSFDRIKQLYQKEDARKQSRQ 196

Query: 125 VKICEISSPS 134
           VKIC    PS
Sbjct: 197 VKICTKVPPS 206

[Close]
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match: B9SIS5_RICCO (Protein pof4, putative OS=Ricinus communis GN=RCOM_0540710 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 68/130 (52.31%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           V+ AI  +R+LGDVG+ DL+ L+ ILPHCT+DQLMH+E  ++GRDL+PIT+KLWKTFYEK
Sbjct: 24  VSVAISHVRYLGDVGETDLHLLDQILPHCTMDQLMHVEKSTQGRDLSPITDKLWKTFYEK 83

Query: 65  KFGKDGVNCVLERM-KHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FG+   N  +ERM ++K SFRWK++Y+ K+ E+ +K  E   R  Q+ + E  +KQSRQ
Sbjct: 84  QFGEREANVAIERMRRYKVSFRWKKLYQAKLNEIAKKEDEAVARLRQSYKKEDDKKQSRQ 143

Query: 125 VKICEISSPS 134
           +++C    PS
Sbjct: 144 IRLCTKVPPS 153

[Close]
BLAST of Cp4.1LG03g11510 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-26
Identity = 55/132 (41.67%), Postives = 90/132 (68.18%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           V KAID+++++G VG +D   LE IL HCT++QL HIE+ +   DL+PIT+K WK FY+K
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 65  KFGKDGVNCVLERMKHKE--SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSR 124
            +G++ +  ++E ++  +   F+W+ +YELK+  +++K  E+  R  +  ++E  RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 125 QVKICEISSPSK 135
           Q K+C  + PSK
Sbjct: 138 QTKVCSKAPPSK 149

[Close]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 1 

Query: 1   MSEQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKT 60
           ++  VNKAIDS++FLGDVG  DL  LE IL HCT DQL+HIEN SKGRDLTPITNKLWK 
Sbjct: 11  LNSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKN 70

Query: 61  FYEKKFGKDGVNCVLERMKHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQ 120
           FYE+KFGKD V+ V++     E+F+W  +Y  KMKELE +A +IE R IQ+ + EKARKQ
Sbjct: 71  FYERKFGKDDVDIVVK----NETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 130

Query: 121 SRQVKIC 128
           SRQ+  C
Sbjct: 131 SRQIVFC 133

[Close]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 8.0e-35
Identity = 75/130 (57.69%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           VNKAID++RFLGDVG+ D++ LE ILPHCTVDQLMH+E  S+GRDLTP+T+KLWK FYE+
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDGVNCVLERMKHKE-SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FGK+    V+ERM+ K  +FRW Q+YE KM+++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISSPS 134
           ++IC    PS
Sbjct: 135 IQICSKVPPS 144

[Close]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 75/130 (57.69%), Postives = 99/130 (76.15%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           VNKAID+LRFLGDVG+ D++ L+ ILPHCTVDQLMH+E  S+GRDLTP+T+KLWK FYE+
Sbjct: 15  VNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 65  KFGKDGVNCVLERMKHKE-SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FGK+    V+ERM+ K  +FRW Q+YE KM+++E+   +   R  Q+   E ARKQSRQ
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 125 VKICEISSPS 134
           ++IC    PS
Sbjct: 135 IQICSKVPPS 144

[Close]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match: gi|764642998|ref|XP_011471042.1| (PREDICTED: elongin-A-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 72/130 (55.38%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           ++ AID++R+LGDVG+ D +FLE ILPH T DQLMHIE  +KGRDL+P+T+KLW+ FYEK
Sbjct: 23  IHVAIDNIRYLGDVGETDFDFLEQILPHSTKDQLMHIEKSTKGRDLSPVTDKLWRKFYEK 82

Query: 65  KFGKDGVNCVLERMKHKE-SFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
            FG +  N V+ERMK K+ +FRW Q+Y+ K++E++E   E   R   + + E ARKQSRQ
Sbjct: 83  DFGIERTNLVIERMKKKKVNFRWLQLYQAKLREVDEAENEAADRLKNSYKKEVARKQSRQ 142

Query: 125 VKICEISSPS 134
           V+ICE   PS
Sbjct: 143 VRICEKVPPS 152

[Close]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match: gi|902213886|gb|KNA17359.1| (hypothetical protein SOVF_080700 [Spinacia oleracea])

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31
Identity = 70/130 (53.85%), Postives = 95/130 (73.08%), Query Frame = 1 

Query: 5   VNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENFSKGRDLTPITNKLWKTFYEK 64
           V  AID++R++GDVG  D + LEHILPHCTV+QLMHIEN +  RDL+P+T+KLWK FYE 
Sbjct: 27  VQTAIDNIRYIGDVGPTDSHLLEHILPHCTVEQLMHIENATSERDLSPVTDKLWKKFYEA 86

Query: 65  KFGKDGVNCVLERM-KHKESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKARKQSRQ 124
           +FG   V  V+ER+ K K +F W+Q+Y+ K+KE+ E   E  +R  Q+ +NE ARKQSRQ
Sbjct: 87  EFGAKSVEVVVERVKKFKVTFNWRQLYQAKLKEINENVEESLERLTQSYKNESARKQSRQ 146

Query: 125 VKICEISSPS 134
           +++C    PS
Sbjct: 147 IQLCAKVPPS 156

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g11510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g11510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJR8_CUCSA2.3e-3662.99Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1[more]
A0A0K9REH1_SPIOL1.3e-3153.85Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080700 PE=4 SV=1[more]
A0A061DJY1_THECC2.9e-3153.85Nucleus, subunit A, putative isoform 2 OS=Theobroma cacao GN=TCM_001808 PE=4 SV=... [more]
F6H555_VITVI6.4e-3155.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01320 PE=4 SV=... [more]
B9SIS5_RICCO1.1e-3052.31Protein pof4, putative OS=Ricinus communis GN=RCOM_0540710 PE=4 SV=1[more]
BLAST of Cp4.1LG03g11510 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42780.14.2e-2641.67 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG03g11510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193830|gb|KGN49034.1|3.3e-3662.99hypothetical protein Csa_6G511010 [Cucumis sativus][more]
gi|659112953|ref|XP_008456387.1|8.0e-3557.69PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo][more]
gi|449450878|ref|XP_004143189.1|1.1e-3457.69PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus][more]
gi|764642998|ref|XP_011471042.1|1.4e-3155.38PREDICTED: elongin-A-like [Fragaria vesca subsp. vesca][more]
gi|902213886|gb|KNA17359.1|1.9e-3153.85hypothetical protein SOVF_080700 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g11510.1Cp4.1LG03g11510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 16..123
score: 2.2
NoneNo IPR availableunknownCoilCoilcoord: 87..114
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 7..135
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g11510CmaCh14G016200Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g11510Cla021739Watermelon (97103) v1cpewmB613
Cp4.1LG03g11510ClCG05G006080Watermelon (Charleston Gray)cpewcgB559
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g11510Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g11510Melon (DHL92) v3.6.1cpemedB659
Cp4.1LG03g11510Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g11510Silver-seed gourdcarcpeB0106
Cp4.1LG03g11510Silver-seed gourdcarcpeB0860
Cp4.1LG03g11510Silver-seed gourdcarcpeB0986
Cp4.1LG03g11510Silver-seed gourdcarcpeB1164
Cp4.1LG03g11510Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g11510Wax gourdcpewgoB0762
Cp4.1LG03g11510Wax gourdcpewgoB0783
Cp4.1LG03g11510Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g11510Cucurbita pepo (Zucchini)cpecpeB337
Cp4.1LG03g11510Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g11510Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g11510Cucurbita maxima (Rimu)cmacpeB003
Cp4.1LG03g11510Cucurbita maxima (Rimu)cmacpeB403
Cp4.1LG03g11510Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g11510Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g11510Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g11510Cucurbita moschata (Rifu)cmocpeB365
Cp4.1LG03g11510Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g11510Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g11510Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g11510Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g11510Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g11510Bottle gourd (USVL1VR-Ls)cpelsiB512
Cp4.1LG03g11510Watermelon (Charleston Gray)cpewcgB562
Cp4.1LG03g11510Watermelon (97103) v1cpewmB623
Cp4.1LG03g11510Melon (DHL92) v3.5.1cpemeB555
Cp4.1LG03g11510Melon (DHL92) v3.5.1cpemeB585