ClCG05G006080.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G006080.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein pof4, putative
Location	CG_Chr05 : 6048344 .. 6048945 (+)
Sequence length	558

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGGTATCTAATAAGTTTTTCTACTCAACTTTGTTCTATTGAGTTAGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

mRNA sequence

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

Coding sequence (CDS)

ATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACATCTGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGAGAGAATAATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAGGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGAAAAGCAATGAAAAGAAGGCAAAGAAAATTGAGGTTCGATATATACAAAACCATCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACAAAGATTTAAAGGAAAATCAACTGAGTTTGGATGCAATACCACCGAGAGCAAGATTTTGAATAAGTCGAAGAGAGAAGTACAAATTTATGAAGTTCCATCTACGAATGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACGAAATACTAAGACAAGCGAGACGTGGAAGAAGGCAAAGAGAGAAGCGTTGCAGTGTATAAAGATGAAGAACCTAATAGCTTTTCAAAAAAAATTGATGCAAAAGTAG

Protein sequence

MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSNEKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRRNTKTSETWKKAKREALQCIKMKNLIAFQKKLMQK

Homology

[Close]

BLAST of ClCG05G006080.1 vs. TrEMBL
Match: A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +HIEN SKGRDLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKMK  
Sbjct: 49  LHIENCSKGRDLTPITNKLWKNFYERKFGKDDVDIVV-----KNETFKWMDLYVAKMKEL 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKKQRFKGKSTEFGCNTTESKIL 120
           E +AKKIE R IQ++QKEKA+K+SRQI+FCG   S ++ K     ++  F  NTT+S  L
Sbjct: 109 ENRAKKIEDRIIQSYQKEKARKQSRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTL 168

Query: 121 NKSKREVQIYEVPSTNDNKKKQS 143
            K+KRE+ + +V ST+ NK+  S
Sbjct: 169 KKAKRELHVPKV-STSSNKEWNS 185

[Close]

BLAST of ClCG05G006080.1 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.5e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080.1 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.2e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVEKSTKGRDLSSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080.1 vs. TrEMBL
Match: A0A0D2NJM7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSK 124
           K+K
Sbjct: 181 KAK 183

[Close]

BLAST of ClCG05G006080.1 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MHIE S+ GRDL+SVTDKLWK FYEK+FGE + D VI+RM+ KK SF+W Q+YEAK+K  
Sbjct: 50  MHIEKSTVGRDLSSVTDKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDI 109

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKS-TEFGCNTTESKIL 120
            +   K+  R  Q ++KE  +K+SRQ+  C    P + K+ F G S   +  +  +S ++
Sbjct: 110 AEAENKLAARIRQLYKKEDDRKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLM 169

Query: 121 NKSK------REVQIYEVPSTNDNKKKQSFGGTIKP 150
            K+K      REVQ       N  ++  S    +KP
Sbjct: 170 KKAKMDFLKSREVQNIAAMKKNALQRNSSSSSMMKP 205

[Close]

BLAST of ClCG05G006080.1 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15
Identity = 39/123 (31.71%), Postives = 72/123 (58.54%), Query Frame = 1


Query: 2   HIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAKMKSN 61
           HIE+++   DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K+ + 
Sbjct: 53  HIEDATDDTDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAV 112

Query: 62  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 121
           ++K K++  R  + ++ E  +K+SRQ   C   +P +K+  +   ++ +     +S I+ 
Sbjct: 113 QQKEKELGGRLKERYKDENERKQSRQTKVC-SKAPPSKRPFWGNSASGYNLGHVKSNIMK 172

Query: 122 KSK 124
           K+K
Sbjct: 173 KAK 174

[Close]

BLAST of ClCG05G006080.1 vs. NCBI nr
Match: gi|700193830|gb|KGN49034.1| (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +HIEN SKGRDLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKMK  
Sbjct: 49  LHIENCSKGRDLTPITNKLWKNFYERKFGKDDVDIVV-----KNETFKWMDLYVAKMKEL 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGG-PSPINKKQRFKGKSTEFGCNTTESKIL 120
           E +AKKIE R IQ++QKEKA+K+SRQI+FCG   S ++ K     ++  F  NTT+S  L
Sbjct: 109 ENRAKKIEDRIIQSYQKEKARKQSRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTL 168

Query: 121 NKSKREVQIYEVPSTNDNKKKQS 143
            K+KRE+ + +V ST+ NK+  S
Sbjct: 169 KKAKRELHVPKV-STSSNKEWNS 185

[Close]

BLAST of ClCG05G006080.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-26
Identity = 71/167 (42.51%), Postives = 99/167 (59.28%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDI 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           EK   K   R  Q++ KE A+K+SRQI  C    P + K+ F G    +    T++KIL 
Sbjct: 109 EKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILK 168

Query: 121 KSKREV-QIYEVPS-----TNDNKKKQSFGGTIKPRRNTKTSETWKK 162
           K+K EV Q  E+ +      N  +K      T KP  + + S +  K
Sbjct: 169 KAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSK 215

[Close]

BLAST of ClCG05G006080.1 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K                 
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQK----------------- 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
                ++  R+IQ ++ +    E  +       +    KQ +  ++              
Sbjct: 109 -----RVAFRWIQLYEAKMEDIEKNE-----SKAADRIKQSYLKENAR------------ 168

Query: 121 KSKREVQIYEVPSTNDNKKKQSFGGTIKPRR--NTKTSETWKKAKREALQCIKMKNLIAF 180
           K  R++QI      + NK+  SFGG+       NTK ++  KKAK E LQ  +MKN+ A+
Sbjct: 169 KQSRQIQICSKVPPSSNKR--SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAW 193

Query: 181 QKKLMQK 186
           ++  +QK
Sbjct: 229 RRNAVQK 193

HSP 2 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM+  
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDI 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           EK   K   R  Q++ KE A+K+SRQI  C    P + K+ F G    +    T++KIL 
Sbjct: 109 EKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILK 168

Query: 121 KSKREV 127
           K+K EV
Sbjct: 169 KAKIEV 174

[Close]

BLAST of ClCG05G006080.1 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           MH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K                 
Sbjct: 49  MHVEKSSEGRDLTPVTDKLWKKFYERQFGKESTTTVIERMRQK----------------- 108

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
                ++  R+IQ ++ +    E  +       +    KQ +  ++              
Sbjct: 109 -----RVAFRWIQLYEAKMQDIEKNE-----SKAADRIKQSYLKENAR------------ 168

Query: 121 KSKREVQIYEVPSTNDNKKKQSFGGTIKPRR--NTKTSETWKKAKREALQCIKMKNLIAF 180
           K  R++QI      + NK+  SFGG+       NTK ++  KKAK E LQ  +MKN+ A+
Sbjct: 169 KQSRQIQICSKVPPSSNKR--SFGGSGYGYNVANTK-NKILKKAKIEVLQSQEMKNIKAW 193

Query: 181 QKKLMQK 186
           ++  +QK
Sbjct: 229 RRNAVQK 193

HSP 2 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVETSTKGRDLSSVTDKLWKNFYELQFGRESMQIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

[Close]

BLAST of ClCG05G006080.1 vs. NCBI nr
Match: gi|728807916|gb|KHF97908.1| (Elongin-A [Gossypium arboreum])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 1   MHIENSSKGRDLTSVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMKSN 60
           +H+E S+KGRDL+SVTDKLWKNFYE +FG  +   VIERMK KK SF+W+Q+YEAK+K  
Sbjct: 61  LHVEKSTKGRDLSSVTDKLWKNFYELQFGRESMKIVIERMKLKKVSFRWRQLYEAKLKDV 120

Query: 61  EKKAKKIEVRYIQNHQKEKAQKESRQIIFCGGPSPINKKQRFKGKSTEFGCNTTESKILN 120
           ++   K   R  Q ++KE A+K+SRQ+  C    P +K+  F G    +  +  +S I+ 
Sbjct: 121 QEAENKAIDRLKQLYKKEDARKQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMK 180

Query: 121 KSKRE-VQIYEVPSTNDNKKK 141
           K+K + ++  EV +    KKK
Sbjct: 181 KAKIDLMKSQEVKNLAAMKKK 201

The following BLAST results are available for this feature:

BLAST of ClCG05G006080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR8_CUCSA	3.0e-31	52.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511010 PE=4 SV=1	[more]
A0A0D2RUW6_GOSRA	5.5e-25	44.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A0A0B0MEQ4_GOSAR	7.2e-25	44.68	Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1	[more]
A0A0D2NJM7_GOSRA	1.2e-24	47.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A9P8K1_POPTR	1.6e-24	42.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1	[more]

BLAST of ClCG05G006080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	4.6e-15	31.71	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G006080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193830\|gb\|KGN49034.1\|	4.3e-31	52.45	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	5.4e-26	42.51	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	3.8e-11	32.09	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	3.8e-11	32.09	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|728807916\|gb\|KHF97908.1\|	1.0e-24	44.68	Elongin-A [Gossypium arboreum]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G006080	ClCG05G006080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G006080.1	ClCG05G006080.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G006080.1.cds1	ClCG05G006080.1.cds1	CDS
ClCG05G006080.1.cds2	ClCG05G006080.1.cds2	CDS