Cla97C05G087580 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G087580
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	transcription elongation factor B polypeptide 3-like
Location	Cla97Chr05 : 5777224 .. 5777934 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

mRNA sequence

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Coding sequence (CDS)

ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAATCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATTTCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAGTTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAATCAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCATCTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGTATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG

Protein sequence

MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

Homology

[Close]

BLAST of Cla97C05G087580 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 109/219 (49.77%), Postives = 143/219 (65.30%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTP+T+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXXXXXRQ 137
           KFGK+D + V++RMKH KESF+WKQ+YE K++E E KA ++E                R 
Sbjct: 65  KFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVE---------------KRY 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXXXXXXX 197
           I  C      N+K R + + ++    +  SK+LKK K   ++C+VS              
Sbjct: 125 IRNCQ-----NEKARKQSRQVKICEISPSSKVLKKPKVHTKVCQVS----------SANN 184

Query: 198 XKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
            K  +    +KI KKA++E LQ IETKNLIAFRRNA+QK
Sbjct: 185 NKRSYLGGTSKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Cla97C05G087580 vs. NCBI nr
Match: XP_022979565.1 (uncharacterized protein LOC111479243 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 5.5e-43
Identity = 112/225 (49.78%), Postives = 141/225 (62.67%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FLGDVG  DLN L+ ILPHCT+ QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXXXXXRQ 137
           KFGK+  + V+E MKH KESFKWKQ+YE K++E E+KA +IE                R 
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIE---------------KRY 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXXXXXXX 197
           I  C      N+K R + + ++    +  SK+LKKSK   + C+VS              
Sbjct: 125 IQNCQ-----NEKARKQSRQVKICEISPSSKVLKKSKVHTKFCQVS-------------- 184

Query: 198 XKPRHNTK------PTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
               HN K       +KI KKA++E LQ IETKN+IAFRRN +QK
Sbjct: 185 --SAHNDKRSYLGGTSKILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of Cla97C05G087580 vs. NCBI nr
Match: XP_023526910.1 (uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 4.6e-42
Identity = 108/219 (49.32%), Postives = 133/219 (60.73%), Query Frame = 0


Query: 18  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSL+FL DVG+ DLN L+ ILPHCT+ QLM IEN SKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLEDVGETDLNFLEHILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXXXXXRQ 137
           KFGK+  + VIE MKH KESFKWKQ+YE K +E E+KA +IE                RQ
Sbjct: 65  KFGKDAVNSVIEMMKH-KESFKWKQMYELKTKELEEKAVEIEKRYIQNCHNEKARKQSRQ 124

Query: 138 IIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXXXXXXX 197
           +  C  S P                    SK+LKK K + ++C+VS              
Sbjct: 125 VKICEISPP-------------------SSKVLKKPKVQTKVCQVS----------SVTN 184

Query: 198 XKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
            K  +    +KI KKA++E LQ IETKN IAFRRNA+QK
Sbjct: 185 NKRSYVGGTSKILKKARKETLQSIETKNAIAFRRNAVQK 193

[Close]

BLAST of Cla97C05G087580 vs. NCBI nr
Match: XP_004143189.1 (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 99/224 (44.20%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXX 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKME+ EK   K               
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIKQSYLKENAR 129

Query: 133 XXXRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXX 192
              RQI  C    P + KR F G    +G N   +K                        
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSG--YGYNVANTK------------------------ 189

Query: 193 XXXXXXKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                          KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 --------------NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Cla97C05G087580 vs. NCBI nr
Match: KGN49034.1 (hypothetical protein Csa_6G511010 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 87/170 (51.18%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXXXX 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE               
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 XRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVS 184
            RQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS 176

[Close]

BLAST of Cla97C05G087580 vs. TrEMBL
Match: tr|A0A0A0KJR8|A0A0A0KJR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.8e-38
Identity = 87/170 (51.18%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 15  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNF 74
           N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNF
Sbjct: 12  NSDVNKAIDSVKFLGDVGDTDLRSLESILSHCTADQLLHIENCSKGRDLTPITNKLWKNF 71

Query: 75  YEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXXXX 134
           YE+KFGK+D D V+     K E+FKW  +Y AKM+E E +A+KIE               
Sbjct: 72  YERKFGKDDVDIVV-----KNETFKWMDLYVAKMKELENRAKKIEDRIIQSYQKEKARKQ 131

Query: 135 XRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVS 184
            RQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS
Sbjct: 132 SRQIVFCGSEDSLLSNKNPKSNRTVGFKSNTTKSVTLKKAKRELHVPKVS 176

[Close]

BLAST of Cla97C05G087580 vs. TrEMBL
Match: tr|A0A1S4E1U0|A0A1S4E1U0_CUCME (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.3e-37
Identity = 96/224 (42.86%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXX 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K               
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 XXXRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXX 192
              RQI  C    P + KR F G    +G N   +K                        
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSG--YGYNVANTK------------------------ 189

Query: 193 XXXXXXKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                          KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 --------------NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Cla97C05G087580 vs. TrEMBL
Match: tr|A0A1S3C4D6|A0A1S3C4D6_CUCME (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.3e-37
Identity = 96/224 (42.86%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXX 132
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ EK   K               
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENAR 129

Query: 133 XXXRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSXXXXXXXXX 192
              RQI  C    P + KR F G    +G N   +K                        
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSG--YGYNVANTK------------------------ 189

Query: 193 XXXXXXKPRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK 237
                          KI KKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 190 --------------NKILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Cla97C05G087580 vs. TrEMBL
Match: tr|A0A0A0KGZ5|A0A0A0KGZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32
Identity = 68/105 (64.76%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L +N+AID+L+FLGDVG+ D++LLDRILPHCT++QLMH+E SS+GRDLTPVTDKLWK
Sbjct: 10  LVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPVTDKLWK 69

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK 118
            FYE++FGK     VIERM+ K+ +F+W Q+YEAKME+ EK   K
Sbjct: 70  KFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESK 114

[Close]

BLAST of Cla97C05G087580 vs. TrEMBL
Match: tr|A0A2K1Y9I6|A0A2K1Y9I6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G059000v3 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.4e-32
Identity = 75/165 (45.45%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 13  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWK 72
           L +L ++ A++++K+LGDVG+ DL+LLDRILPHCT++QLMHIE S+ GRDL+ VTDKLWK
Sbjct: 11  LVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWK 70

Query: 73  NFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARKIEAXXXXXXXXXXXX 132
            FYEK+FG+   D VI+RM+ KK SF+W Q+YEAK+++  +   K+ A            
Sbjct: 71  TFYEKQFGERSTDLVIQRMRQKKVSFRWLQLYEAKLKDIAEAENKLAARIRQLYKKEDDR 130

Query: 133 XXXRQIIFCGGSSPINKKRRF-EGKSIEFGCNATESKLLKKSKRE 177
              RQ+  C    P + KR F  G    +  +  +S L+KK+K +
Sbjct: 131 KQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMD 175

[Close]

BLAST of Cla97C05G087580 vs. TAIR10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-23
Identity = 61/176 (34.66%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKG 60
           ++E + K   S L +L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++  
Sbjct: 2   LFERLTKKPPS-LVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDD 61

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFKWKQIYEAKMEEFEKKARKIE 120
            DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FKW+ +YE K+   ++K +++ 
Sbjct: 62  TDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELG 121

Query: 121 AXXXXXXXXXXXXXXXRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK 175
                           RQ   C  + P   KR F G S   +     +S ++KK+K
Sbjct: 122 GRLKERYKDENERKQSRQTKVCSKAPP--SKRPFWGNSASGYNLGHVKSNIMKKAK 174

The following BLAST results are available for this feature:

BLAST of Cla97C05G087580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979571.1	1.7e-44	49.77	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
XP_022979565.1	5.5e-43	49.78	uncharacterized protein LOC111479243 [Cucurbita maxima]	[more]
XP_023526910.1	4.6e-42	49.32	uncharacterized protein LOC111790279 [Cucurbita pepo subsp. pepo]	[more]
XP_004143189.1	3.1e-38	44.20	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
KGN49034.1	1.2e-37	51.18	hypothetical protein Csa_6G511010 [Cucumis sativus]	[more]

BLAST of Cla97C05G087580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJR8\|A0A0A0KJR8_CUCSA	7.8e-38	51.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511010 PE=4 SV=1	[more]
tr\|A0A1S4E1U0\|A0A1S4E1U0_CUCME	2.3e-37	42.86	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S3C4D6\|A0A1S3C4D6_CUCME	2.3e-37	42.86	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KGZ5\|A0A0A0KGZ5_CUCSA	4.9e-32	64.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1	[more]
tr\|A0A2K1Y9I6\|A0A2K1Y9I6_POPTR	6.4e-32	45.45	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G059000v3 PE=...	[more]

BLAST of Cla97C05G087580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G087580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	3.4e-23	34.66	FUNCTIONS IN: molecular_function unknown	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0070449	elongin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR010684	RNA_pol_II_trans_fac_SIII_A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G087580.1	Cla97C05G087580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..203
None	No IPR available	PANTHER	PTHR15141	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	coord: 11..183
None	No IPR available	PANTHER	PTHR15141:SF53	SUBFAMILY NOT NAMED	coord: 11..183
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 e-value: 6.6E-23 score: 81.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G087580	Cla021739	Watermelon (97103) v1	wmwmbB206
Cla97C05G087580	ClCG05G006080	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G087580	CmaCh14G016200	Cucurbita maxima (Rimu)	cmawmbB263

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G087580	Wax gourd	wgowmbB079
Cla97C05G087580	Wax gourd	wgowmbB178
Cla97C05G087580	Watermelon (97103) v2	wmbwmbB137
Cla97C05G087580	Watermelon (97103) v2	wmbwmbB155
Cla97C05G087580	Silver-seed gourd	carwmbB0069
Cla97C05G087580	Silver-seed gourd	carwmbB0113
Cla97C05G087580	Silver-seed gourd	carwmbB0631
Cla97C05G087580	Silver-seed gourd	carwmbB0734
Cla97C05G087580	Silver-seed gourd	carwmbB0867
Cla97C05G087580	Cucumber (Gy14) v2	cgybwmbB061
Cla97C05G087580	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G087580	Cucumber (Gy14) v2	cgybwmbB510
Cla97C05G087580	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G087580	Cucurbita maxima (Rimu)	cmawmbB009
Cla97C05G087580	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G087580	Cucurbita maxima (Rimu)	cmawmbB368
Cla97C05G087580	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G087580	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G087580	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G087580	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G087580	Cucurbita moschata (Rifu)	cmowmbB353
Cla97C05G087580	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G087580	Cucurbita moschata (Rifu)	cmowmbB887
Cla97C05G087580	Wild cucumber (PI 183967)	cpiwmbB066
Cla97C05G087580	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G087580	Wild cucumber (PI 183967)	cpiwmbB564
Cla97C05G087580	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G087580	Cucumber (Chinese Long) v2	cuwmbB064
Cla97C05G087580	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G087580	Cucumber (Chinese Long) v2	cuwmbB539
Cla97C05G087580	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G087580	Bottle gourd (USVL1VR-Ls)	lsiwmbB188
Cla97C05G087580	Bottle gourd (USVL1VR-Ls)	lsiwmbB330
Cla97C05G087580	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G087580	Melon (DHL92) v3.6.1	medwmbB246
Cla97C05G087580	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G087580	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G087580	Melon (DHL92) v3.5.1	mewmbB260
Cla97C05G087580	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G087580	Watermelon (Charleston Gray)	wcgwmbB022
Cla97C05G087580	Watermelon (Charleston Gray)	wcgwmbB189
Cla97C05G087580	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G087580	Watermelon (97103) v1	wmwmbB027
Cla97C05G087580	Watermelon (97103) v1	wmwmbB136
Cla97C05G087580	Watermelon (97103) v1	wmwmbB402