ClCG05G004450 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G004450
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 4183690 .. 4185291 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTGAAGAAATGTACAGAAAAAAAAAAAAGAAAAAAGAAAAAAACGGAAAATTTAGATAAAGTGAGATTTAAAAATAATAATTAAAAAAAACAAAACAAAAATGGGTCCTATCCCAAAATTTAAATAAAAAGTGCGATTTTGTAAGTTATAATATGATTTATTGATATTCAAATATGGGAATGACAAAATTTAATTACGTGTAATAAAAGATACACAAGATATCGTTGAAGACATTTTAAGGTTAACAAAAGGAAAGGGAAGTGTGTTGCTATAATTGTTATGATTTTCATTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTAAATTTTCAATTAATTGATACTTTAATTGATGCTACCATATGAATTTACCTTAATTTTTTATTAACTTTCATTCCAACTCTTACCCTATTCTAATTCATGGCTCTAAAATAGTGGAGGAGAAAACAAGCTTTCCACAGTTAACAATGGATTATAAAATAGAATTTTAAAAAACAAAAGAAAGAGAAGAAGCACATTTTGTATGGTAAAGATTGAAGAATGCAGATTCATTGTCCAATCAACACTAATCATGAACCTTATGCACATTGATTCAACTTAACTTTGCTTTAACCATGAAAGTTTTTTTTAAGTTACAACATATTTAACACAAATTAGAGTTTACTAAACTTGGAATTCTAATTTTTTAAATCCAAAGAACTAAACTCTAACTTTTACCAAACTATAACCAATTTTTCAGTTTAACCTAAAATCAAAACTCTAAACTAAAATTTGACACAAACATAGAGCTTGCTGAACTTATAATTTTTTTTTTCTCTCTCTCTCTCTCAGGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGTCAATCCAAGCAACCCAGAGATTTCAGGATATAAGCTCTTCCTAATCTCGGCGTAGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATGTACAACACACCTCGGTCGCTCCTCATGATCAGATAGTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

mRNA sequence

ATGAGATTTGAAGAAATGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

Coding sequence (CDS)

ATGAGATTTGAAGAAATGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

Protein sequence

MRFEEMLRSKLRNCYDLGGISIPIPPRQLLPKPHCRLHDAVLPVVCRVCYPHPHRRLTSHFHPPQEHIPPHRTRPDLGLGQRHEVVRESGTQVQLAHSWESAKSRPAAAAWPGRAATVGIGKQRSWARRGLKIWIMWLRRFRAADREEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRVSMNSFPRFSTLHIFETKVSTIVT
Homology
[Close]
BLAST of ClCG05G004450 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 147 EEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRV 206
           EEAERI GRSRPLEKNLPW+VV+RTEPGEA ASA T DRAL MEFIKDG SQC WLPV V
Sbjct: 2   EEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSV 61

Query: 207 SMNSFPRFSTLHIFETKVS 226
            MNSFPRFS LHIF  K+S
Sbjct: 62  RMNSFPRFSILHIFVRKLS 80

[Close]
BLAST of ClCG05G004450 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 6.1e-27
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 147 EEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRV 206
           EEAERI GRSRPLEKNLPW+VV+RTEPGEA ASA T DRAL MEFIKDG SQC WLPV V
Sbjct: 2   EEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSV 61

Query: 207 SMNSFPRFSTLHIFETKVS 226
            MNSFPRFS LHIF  K+S
Sbjct: 62  RMNSFPRFSILHIFVRKLS 80

The following BLAST results are available for this feature:
BLAST of ClCG05G004450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA4.2e-2781.01Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of ClCG05G004450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|6.1e-2781.01hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G004450.1ClCG05G004450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G004450Csa3G141800Cucumber (Chinese Long) v2cuwcgB222
ClCG05G004450CSPI03G12210Wild cucumber (PI 183967)cpiwcgB226
ClCG05G004450CmaCh14G017950Cucurbita maxima (Rimu)cmawcgB233
ClCG05G004450Lsi05G017000Bottle gourd (USVL1VR-Ls)lsiwcgB335
ClCG05G004450Cp4.1LG03g09990Cucurbita pepo (Zucchini)cpewcgB559
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G004450Watermelon (Charleston Gray)wcgwcgB160
ClCG05G004450Watermelon (Charleston Gray)wcgwcgB164
ClCG05G004450Cucumber (Gy14) v1cgywcgB451
ClCG05G004450Cucumber (Gy14) v1cgywcgB653
ClCG05G004450Cucurbita maxima (Rimu)cmawcgB319
ClCG05G004450Cucurbita maxima (Rimu)cmawcgB464
ClCG05G004450Cucurbita maxima (Rimu)cmawcgB737
ClCG05G004450Cucurbita maxima (Rimu)cmawcgB795
ClCG05G004450Cucurbita moschata (Rifu)cmowcgB219
ClCG05G004450Cucurbita moschata (Rifu)cmowcgB315
ClCG05G004450Cucurbita moschata (Rifu)cmowcgB743
ClCG05G004450Cucurbita moschata (Rifu)cmowcgB792
ClCG05G004450Wild cucumber (PI 183967)cpiwcgB141
ClCG05G004450Cucumber (Chinese Long) v2cuwcgB136
ClCG05G004450Melon (DHL92) v3.5.1mewcgB385
ClCG05G004450Melon (DHL92) v3.5.1mewcgB427
ClCG05G004450Watermelon (97103) v1wcgwmB271
ClCG05G004450Watermelon (97103) v1wcgwmB286
ClCG05G004450Watermelon (97103) v1wcgwmB311
ClCG05G004450Cucurbita pepo (Zucchini)cpewcgB138
ClCG05G004450Cucurbita pepo (Zucchini)cpewcgB293
ClCG05G004450Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G004450Bottle gourd (USVL1VR-Ls)lsiwcgB016
ClCG05G004450Cucumber (Gy14) v2cgybwcgB129
ClCG05G004450Cucumber (Gy14) v2cgybwcgB203
ClCG05G004450Melon (DHL92) v3.6.1medwcgB376
ClCG05G004450Melon (DHL92) v3.6.1medwcgB416
ClCG05G004450Silver-seed gourdcarwcgB0220
ClCG05G004450Silver-seed gourdcarwcgB0226
ClCG05G004450Silver-seed gourdcarwcgB0935
ClCG05G004450Silver-seed gourdcarwcgB1045
ClCG05G004450Cucumber (Chinese Long) v3cucwcgB148
ClCG05G004450Cucumber (Chinese Long) v3cucwcgB225
ClCG05G004450Watermelon (97103) v2wcgwmbB229
ClCG05G004450Watermelon (97103) v2wcgwmbB237
ClCG05G004450Watermelon (97103) v2wcgwmbB242
ClCG05G004450Wax gourdwcgwgoB412
ClCG05G004450Wax gourdwcgwgoB447
ClCG05G004450Wax gourdwcgwgoB450