ClCG05G004450.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G004450.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 4183690 .. 4185291 (+)
Sequence length690
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTGAAGAAATGTACAGAAAAAAAAAAAAGAAAAAAGAAAAAAACGGAAAATTTAGATAAAGTGAGATTTAAAAATAATAATTAAAAAAAACAAAACAAAAATGGGTCCTATCCCAAAATTTAAATAAAAAGTGCGATTTTGTAAGTTATAATATGATTTATTGATATTCAAATATGGGAATGACAAAATTTAATTACGTGTAATAAAAGATACACAAGATATCGTTGAAGACATTTTAAGGTTAACAAAAGGAAAGGGAAGTGTGTTGCTATAATTGTTATGATTTTCATTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTAAATTTTCAATTAATTGATACTTTAATTGATGCTACCATATGAATTTACCTTAATTTTTTATTAACTTTCATTCCAACTCTTACCCTATTCTAATTCATGGCTCTAAAATAGTGGAGGAGAAAACAAGCTTTCCACAGTTAACAATGGATTATAAAATAGAATTTTAAAAAACAAAAGAAAGAGAAGAAGCACATTTTGTATGGTAAAGATTGAAGAATGCAGATTCATTGTCCAATCAACACTAATCATGAACCTTATGCACATTGATTCAACTTAACTTTGCTTTAACCATGAAAGTTTTTTTTAAGTTACAACATATTTAACACAAATTAGAGTTTACTAAACTTGGAATTCTAATTTTTTAAATCCAAAGAACTAAACTCTAACTTTTACCAAACTATAACCAATTTTTCAGTTTAACCTAAAATCAAAACTCTAAACTAAAATTTGACACAAACATAGAGCTTGCTGAACTTATAATTTTTTTTTTCTCTCTCTCTCTCTCAGGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGTCAATCCAAGCAACCCAGAGATTTCAGGATATAAGCTCTTCCTAATCTCGGCGTAGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATGTACAACACACCTCGGTCGCTCCTCATGATCAGATAGTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

mRNA sequence

ATGAGATTTGAAGAAATGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

Coding sequence (CDS)

ATGAGATTTGAAGAAATGCTTCGGTCAAAGCTTAGAAATTGTTATGACCTTGGGGGCATCTCCATCCCAATTCCTCCCCGCCAGCTCCTCCCCAAGCCGCACTGCCGCCTCCATGACGCCGTCCTCCCCGTGGTGTGCAGAGTTTGCTATCCCCATCCTCACCGCCGCCTCACCTCTCACTTTCATCCCCCTCAAGAACACATCCCGCCTCACCGAACTCGACCCGATCTTGGACTTGGCCAGCGCCATGAAGTAGTCCGGGAGAGTGGCACCCAAGTCCAGCTCGCTCATTCATGGGAGAGCGCCAAGAGCAGGCCAGCGGCAGCGGCATGGCCTGGGAGGGCGGCCACGGTGGGTATAGGGAAACAGAGGAGCTGGGCCAGGAGGGGCTTGAAAATCTGGATCATGTGGTTGAGGCGGTTTCGGGCGGCGGATAGGGAGGAAGCGGAGAGGATCCAGGGGAGATCGAGGCCGTTGGAGAAGAATTTGCCTTGGGAAGTTGTGATGAGAACCGAGCCAGGGGAGGCTCCGGCTTCGGCCTTCACTAGGGACAGAGCTTTGAGGATGGAATTTATTAAGGATGGGTTGAGCCAGTGCTGGTGGTTGCCGGTTAGAGTTAGTATGAACAGCTTCCCGCGCTTCTCAACGCTGCACATTTTCGAAACGAAGGTTTCAACAATTGTCACTTGA

Protein sequence

MRFEEMLRSKLRNCYDLGGISIPIPPRQLLPKPHCRLHDAVLPVVCRVCYPHPHRRLTSHFHPPQEHIPPHRTRPDLGLGQRHEVVRESGTQVQLAHSWESAKSRPAAAAWPGRAATVGIGKQRSWARRGLKIWIMWLRRFRAADREEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRVSMNSFPRFSTLHIFETKVSTIVT
Homology
[Close]
BLAST of ClCG05G004450.1 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 147 EEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRV 206
           EEAERI GRSRPLEKNLPW+VV+RTEPGEA ASA T DRAL MEFIKDG SQC WLPV V
Sbjct: 2   EEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSV 61

Query: 207 SMNSFPRFSTLHIFETKVS 226
            MNSFPRFS LHIF  K+S
Sbjct: 62  RMNSFPRFSILHIFVRKLS 80

[Close]
BLAST of ClCG05G004450.1 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 6.1e-27
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 147 EEAERIQGRSRPLEKNLPWEVVMRTEPGEAPASAFTRDRALRMEFIKDGLSQCWWLPVRV 206
           EEAERI GRSRPLEKNLPW+VV+RTEPGEA ASA T DRAL MEFIKDG SQC WLPV V
Sbjct: 2   EEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSV 61

Query: 207 SMNSFPRFSTLHIFETKVS 226
            MNSFPRFS LHIF  K+S
Sbjct: 62  RMNSFPRFSILHIFVRKLS 80

The following BLAST results are available for this feature:
BLAST of ClCG05G004450.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA4.2e-2781.01Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of ClCG05G004450.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|6.1e-2781.01hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G004450ClCG05G004450gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G004450.1ClCG05G004450.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G004450.1.cds1ClCG05G004450.1.cds1CDS
ClCG05G004450.1.cds2ClCG05G004450.1.cds2CDS
ClCG05G004450.1.cds3ClCG05G004450.1.cds3CDS
ClCG05G004450.1.cds4ClCG05G004450.1.cds4CDS