CSPI03G12210 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G12210
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 9351402 .. 9351725 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA

mRNA sequence

ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA

Coding sequence (CDS)

ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA
Homology
[Close]
BLAST of CSPI03G12210 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.1e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60
           MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS
Sbjct: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 108
           VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER
Sbjct: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 107

[Close]
BLAST of CSPI03G12210 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 5.9e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60
           MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS
Sbjct: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 108
           VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER
Sbjct: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 107

The following BLAST results are available for this feature:
BLAST of CSPI03G12210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G12210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA4.1e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of CSPI03G12210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G12210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|5.9e-57100.00hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G12210.1CSPI03G12210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G12210Csa3G141800Cucumber (Chinese Long) v2cpicuB120
CSPI03G12210ClCG05G004450Watermelon (Charleston Gray)cpiwcgB226
CSPI03G12210Lsi05G017000Bottle gourd (USVL1VR-Ls)cpilsiB207
CSPI03G12210CmaCh14G017950Cucurbita maxima (Rimu)cmacpiB255
CSPI03G12210Cp4.1LG03g09990Cucurbita pepo (Zucchini)cpecpiB611
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G12210Watermelon (97103) v2cpiwmbB209
CSPI03G12210Watermelon (97103) v2cpiwmbB239
CSPI03G12210Watermelon (97103) v2cpiwmbB250
CSPI03G12210Wax gourdcpiwgoB251
CSPI03G12210Wax gourdcpiwgoB306
CSPI03G12210Wax gourdcpiwgoB313
CSPI03G12210Wild cucumber (PI 183967)cpicpiB057
CSPI03G12210Cucumber (Gy14) v1cgycpiB383
CSPI03G12210Cucumber (Gy14) v1cgycpiB566
CSPI03G12210Cucurbita maxima (Rimu)cmacpiB002
CSPI03G12210Cucurbita maxima (Rimu)cmacpiB826
CSPI03G12210Cucurbita maxima (Rimu)cmacpiB903
CSPI03G12210Cucurbita moschata (Rifu)cmocpiB243
CSPI03G12210Cucurbita moschata (Rifu)cmocpiB513
CSPI03G12210Cucurbita moschata (Rifu)cmocpiB814
CSPI03G12210Cucurbita moschata (Rifu)cmocpiB883
CSPI03G12210Cucumber (Chinese Long) v2cpicuB109
CSPI03G12210Melon (DHL92) v3.5.1cpimeB226
CSPI03G12210Melon (DHL92) v3.5.1cpimeB230
CSPI03G12210Watermelon (Charleston Gray)cpiwcgB255
CSPI03G12210Watermelon (Charleston Gray)cpiwcgB264
CSPI03G12210Watermelon (97103) v1cpiwmB219
CSPI03G12210Watermelon (97103) v1cpiwmB231
CSPI03G12210Watermelon (97103) v1cpiwmB281
CSPI03G12210Cucurbita pepo (Zucchini)cpecpiB312
CSPI03G12210Cucurbita pepo (Zucchini)cpecpiB726
CSPI03G12210Cucurbita pepo (Zucchini)cpecpiB861
CSPI03G12210Bottle gourd (USVL1VR-Ls)cpilsiB149
CSPI03G12210Bottle gourd (USVL1VR-Ls)cpilsiB213
CSPI03G12210Melon (DHL92) v3.6.1cpimedB221
CSPI03G12210Melon (DHL92) v3.6.1cpimedB224
CSPI03G12210Cucumber (Gy14) v2cgybcpiB066
CSPI03G12210Cucumber (Gy14) v2cgybcpiB110
CSPI03G12210Silver-seed gourdcarcpiB0261
CSPI03G12210Silver-seed gourdcarcpiB0266
CSPI03G12210Silver-seed gourdcarcpiB0787
CSPI03G12210Silver-seed gourdcarcpiB0998
CSPI03G12210Silver-seed gourdcarcpiB1115
CSPI03G12210Cucumber (Chinese Long) v3cpicucB134
CSPI03G12210Cucumber (Chinese Long) v3cpicucB144