ClCG03G012060 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G012060
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Eukaryotic translation initiation factor 3 subunit A
Location	CG_Chr03 : 24182623 .. 24185821 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAATTATCACTTGTCCGCATTTTATTTAAACATGTTTCAACGAAGCAAGCGGCAGGCAAATTTCTCCCCTCTTTCTACCTGAAATCTCCATCAATGGCTTCCTTCTCTACAATCCTCTCCCCGTTCTCTCTATTCCTTCTCATTCTCGCCATCTCCACCCAAACCCATCTCTCCTTTTCAACGAGGGATATCACCCTCAAGTCAACTGATATCCACGATCTTCTTCCCCTTTACGGTTTTCCAATCGGTCTCTTACCCAACAATGTCAAGTCCTACATTCTCTCCGACGACGGTAGCTTCGAAATCGAACTCGAAAGCGATTGCTATGTCAAATTCACTGATCTGGTCTACTACGGAAGGCATATCAAGGGCAAATTGAGCTATGGGTCTTTGACCGATGTTTCTGGGATTCAAGTGAAGAAGCTCTTCGCGTGGCTCCCTATTACTGGAATCAAGGTTAATAAAGGCTCTGATTCCATTGAGTTTGCGGTTGGGTTCTTGTCTGAGACTTTGCCGGCCGACCTGTTCCACAGCATTCCTGCATGTAGAAGGAAGGCTTGCCTAGAAGGAAAAACAGAGGCAATGTGAGGTAGTTTTGATCTGATCTTCTTGATGTTCGCATTTTTTGAAGAGTGATTGTTTGCTTGTTCAGTTTTAGATGCAGATACAGATACTTGATTTTTGACTTTCCATTTTGACTTCTGTTTATAAATGTGTTTGAGAATCATGGATCTGGAATTTGAAATCGTGACAATCAGCAGTATGCTAATGCTTGTTCTGAGATTTGGGTTCTTTGCTGTGATTTGGGTTTTTATTGACTAAAATAATAGTTCTATAATCTATCATATGGTCAAAATGAGGATGGAAATGAGAATGTCCCATCCAAAGAAGTTACCAAAAGCTTCTACAATTAGTTGTGAGCTAGGATTAAATTGTCAATGTCGATACCGATATCAGAATTTCAATTGATGGATCTTTCTGTTTATGAAAAAAGAATTACAAAGTCTACTTAAATTAATAATAAAATTGTTTTTACTTCCATACTAAATTATAGATCTTGTTTGTAGTATATATCTACCTATTAATCTTAATAGGTGATCTGGAGATATTGATTAATCTTTAATGTCAATGTCGAACTCTTCGATATAAGAATATATTGACAAATATATCGATGAATCGACAGATATTTTAATCATTGGTTGTGAGAGAGCTAAAGCTATTGTGACTTAATTTTGCACCAAGAAATAATCAGTGAGGGCTTCTGTTGTTTTGGATAGAAAAGAAAATGTGAACTTACGCAAATGTGAGATGTTGTTTATTGTTTCTGAGATGCTTGATAATCTGAAATTTCTTCTAACTCTTCTCAAGAGTTCCACTAGATCCAATGGGGATACCAACTCTTTCATAGTGAGCTATTGGATCTGCTGGAATTTGGAAAGGAGTTGAAAGAGGATGATTGTCATGTCAATTGAATTTCATTGTTAAGCTTAGTTCATAGTCAGAGATCACACGAGGTAGTTTCATTTAGAAAGTTAAGTTAAATGCTTACTGTTTCGTTTGATAACATTTTCGTTTGTTGTTTTCTGTTTTTAGATATTAAACTTGTTGACTAACCATTATGTTGTTTATTTTCTACTTTCTGAATGCTTTTGAAAACAACAAATTGTTAAAAACAGAAAATAAAATTGAGGCTTAACCAAGCTAGAATAGGACTAAGTGACTAACCGAACTCCAGATTTCACGACCTCTCACCGGCTCGAAACCTGCTCCCTCTTCAAAGGAATGAAGAAATTAGAAGAACATAAAGTTTTTGTTATGAAGTAAGCGATTCAGTTACAGAGTAGGATGAGACTTTGCTGAGATTGCAATCTGATCAATGGAGTGATTATATTGCACTTGAGATATATTTTGAATAAAAAACAAGATTAAATTTAAATCATGGACAATTAGCTTTCTTCTCTCCCCTTCAAAGTAACTTGTTTTTGAGAAAAATTCAGCAGCCAAAGTATAGCTAAGAGGGATACTTTTATAGAATTACTAATGAATGACTCCTTAGACCAAAAGGTTAGTAGGATATTAGTAAAGGGTATTACGGATAATTAGCTAATGGTTTCTTGGTTATAAATAAGTGGTGGTCACCTTAAAGGGGCGTGGATCATTTTGGTGAAAGTTTACATTGTGTGTTGATGTGAAATATTAATGTGAAAGACTAGATTGAGGACTGCAACTAAATATTGGAAAGTTGAGGGTTCAAACTAGAATCATTTGCAATATAAGGAAGTTACTCAATATTAAATAGGTCCCTCATGATTGGGAAGTTGTTAATTTTGTTTCTCTCATGGTTTAGTAACCTAGCATGAATTTCTTGTCACTAAGTTATGTTTAGTAACCATTTAATTTTTAGTTTTTTATTATTTCTTATCAATTTCTTATGATGGTTTTCATCTATCTTAAGTAAAAGAGCTGAATTCTAATTCAAATTTAAAAAATAAAAACAAGTTTCTAAAAACTACTTTTTTTTAGTTTTCAAAATCTGGCTTTATTTTTTAAAACATTAATAAGCTAATTTTTAAAAATGAAAAACAAAAAATCAAATAGTTCCTAAATGATTATTATTCTTGTTCCCTTCTAGATATTGTTGTCTTGTCTGTTGTTCATGTATTGATTTAACTATATATAATAACCATGCTTGTTCTTTTTTGAACATTATTTTTTACATCTTGGACTATACTCCACTTGTCCAACCACAATTTGTCACGTGACAAATTTATCCTCTTCTTTTTTTATAAAAATAATTTTTAGTTTTTTTCTTTTTTCTTTTTGTTTCGTGGTTAGACAATAATGATAAGATGAGTGCAACTTAAGATGCACCAAATATTTTCATTTTTGTTAGAGTTGATATTAATCTCTTTGTCGGTCTGTTGCAGGTGGAAATAATAGCTTTCCAAAGTCGTTTATCCTTTCATTTGGTGTGAGAAGGTTGTTGGCCTTTGCAAGAAGAATAAATATAATCTTTGTTTCTATGTCATGAACCTATAATGTTCGTTTTTAATCCTTTTTTCTATATGTTGCATCTATATCTATATTATAAATATTCCCACATGTTTACCAAATGTTTCTTTCAATAATAATATCCTTTTCCTACATATAATCAAAGAAGAATGGCGAATACGTCAAATGTTGATCTTGATGACCGT

mRNA sequence

CGAAATTATCACTTGTCCGCATTTTATTTAAACATGTTTCAACGAAGCAAGCGGCAGGCAAATTTCTCCCCTCTTTCTACCTGAAATCTCCATCAATGGCTTCCTTCTCTACAATCCTCTCCCCGTTCTCTCTATTCCTTCTCATTCTCGCCATCTCCACCCAAACCCATCTCTCCTTTTCAACGAGGGATATCACCCTCAAGTCAACTGATATCCACGATCTTCTTCCCCTTTACGGTTTTCCAATCGGTCTCTTACCCAACAATGTCAAGTCCTACATTCTCTCCGACGACGGTAGCTTCGAAATCGAACTCGAAAGCGATTGCTATGTCAAATTCACTGATCTGGTCTACTACGGAAGGCATATCAAGGGCAAATTGAGCTATGGGTCTTTGACCGATGTTTCTGGGATTCAAGTGAAGAAGCTCTTCGCGTGGCTCCCTATTACTGGAATCAAGGTTAATAAAGGCTCTGATTCCATTGAGTTTGCGGTTGGGTTCTTGTCTGAGACTTTGCCGGCCGACCTGTTCCACAGCATTCCTGCATGTAGAAGGAAGGCTTGCCTAGAAGGAAAAACAGAGGCAATGTGAGTGGAAATAATAGCTTTCCAAAGTCGTTTATCCTTTCATTTGGTGTGAGAAGGTTGTTGGCCTTTGCAAGAAGAATAAATATAATCTTTGTTTCTATGTCATGAACCTATAATGTTCGTTTTTAATCCTTTTTTCTATATGTTGCATCTATATCTATATTATAAATATTCCCACATGTTTACCAAATGTTTCTTTCAATAATAATATCCTTTTCCTACATATAATCAAAGAAGAATGGCGAATACGTCAAATGTTGATCTTGATGACCGT

Coding sequence (CDS)

ATGGCTTCCTTCTCTACAATCCTCTCCCCGTTCTCTCTATTCCTTCTCATTCTCGCCATCTCCACCCAAACCCATCTCTCCTTTTCAACGAGGGATATCACCCTCAAGTCAACTGATATCCACGATCTTCTTCCCCTTTACGGTTTTCCAATCGGTCTCTTACCCAACAATGTCAAGTCCTACATTCTCTCCGACGACGGTAGCTTCGAAATCGAACTCGAAAGCGATTGCTATGTCAAATTCACTGATCTGGTCTACTACGGAAGGCATATCAAGGGCAAATTGAGCTATGGGTCTTTGACCGATGTTTCTGGGATTCAAGTGAAGAAGCTCTTCGCGTGGCTCCCTATTACTGGAATCAAGGTTAATAAAGGCTCTGATTCCATTGAGTTTGCGGTTGGGTTCTTGTCTGAGACTTTGCCGGCCGACCTGTTCCACAGCATTCCTGCATGTAGAAGGAAGGCTTGCCTAGAAGGAAAAACAGAGGCAATGTGA

Protein sequence

MASFSTILSPFSLFLLILAISTQTHLSFSTRDITLKSTDIHDLLPLYGFPIGLLPNNVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM

Homology

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BLAST of ClCG03G012060 vs. TrEMBL
Match: A0A0A0M0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630320 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.6e-68
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1


Query: 1   MASFSTILSPFSLFLLILAISTQTHLSFSTRDITLKSTDIHDLLPLYGFPIGLLPNNVKS 60
           MASFSTILSPFSLFLLIL  STQTHLSFS RD  L+S+DIHDLLPLYGFP+GLLP+NV S
Sbjct: 1   MASFSTILSPFSLFLLILLFSTQTHLSFSARDFPLRSSDIHDLLPLYGFPVGLLPDNVNS 60

Query: 61  YILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGI 120
           Y LSDDG+FEI+L+S CYV F+DLVYYG++IKGKLS  SL+DVSGI+VKKLFAWLPITGI
Sbjct: 61  YTLSDDGTFEIQLQSSCYVHFSDLVYYGKNIKGKLSNRSLSDVSGIEVKKLFAWLPITGI 120

Query: 121 KVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           KV   S SIEFAVGFLSE LP  +F SIP CRRKACLEGKTEAM
Sbjct: 121 KVTPDSKSIEFAVGFLSEILPVSMFESIPTCRRKACLEGKTEAM 164

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BLAST of ClCG03G012060 vs. TrEMBL
Match: A0A061GS48_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_040161 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 94/168 (55.95%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 5   STILSPFSLFLLILAISTQTHLSFST--------RDITLKSTDIHDLLPLYGFPIGLLPN 64
           S + +P SL+LL+LA+  QTHLSFST        R +++ ++D+HDLLP YG P G+LPN
Sbjct: 61  SKMAAPISLYLLLLALFCQTHLSFSTTGPAIDHSRPLSISTSDVHDLLPTYGLPKGILPN 120

Query: 65  NVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLP 124
           NVKSY LS  G F IELES CYV+F  LVYY + IKGKLSYG++ DVSGIQ KKLF WLP
Sbjct: 121 NVKSYTLSTTGDFTIELESTCYVQFDQLVYYEKKIKGKLSYGAVHDVSGIQAKKLFLWLP 180

Query: 125 ITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           +TGI+V++ S  ++F VG LSE LPA  F  IP C+  A L     +M
Sbjct: 181 VTGIEVDENSGMVQFFVGALSEKLPAKQFEDIPVCKGNAFLRADLASM 228

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BLAST of ClCG03G012060 vs. TrEMBL
Match: M5W1G2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012400mg PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 94/159 (59.12%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 8   LSPFSLFLLILAISTQTHLSFSTRDI---------TLKS-TDIHDLLPLYGFPIGLLPNN 67
           ++  S +LLIL   ++TH   S RD+         T +S TD+HDLLP YG P GLLP+N
Sbjct: 5   IAQISFYLLILTFFSETHFGLSLRDLKSDPNRPSTTAQSITDVHDLLPKYGLPKGLLPDN 64

Query: 68  VKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPI 127
           V SY LS+DGSFEI LES CYV F  LVYY ++IKGKLSYGS++DVSGIQ KKLF W+ +
Sbjct: 65  VNSYTLSEDGSFEIYLESPCYVHFDQLVYYNKNIKGKLSYGSVSDVSGIQAKKLFIWVSV 124

Query: 128 TGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKAC 157
           TGI+V++GSDS+EF VG LSE LPA  F  IP C+ KAC
Sbjct: 125 TGIQVDQGSDSVEFYVGALSEKLPAKQFEDIPVCKSKAC 163

[Close]

BLAST of ClCG03G012060 vs. TrEMBL
Match: A0A061GR70_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_040161 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 93/164 (56.71%), Postives = 116/164 (70.73%), Query Frame = 1


Query: 9   SPFSLFLLILAISTQTHLSFST--------RDITLKSTDIHDLLPLYGFPIGLLPNNVKS 68
           +P SL+LL+LA+  QTHLSFST        R +++ ++D+HDLLP YG P G+LPNNVKS
Sbjct: 3   APISLYLLLLALFCQTHLSFSTTGPAIDHSRPLSISTSDVHDLLPTYGLPKGILPNNVKS 62

Query: 69  YILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGI 128
           Y LS  G F IELES CYV+F  LVYY + IKGKLSYG++ DVSGIQ KKLF WLP+TGI
Sbjct: 63  YTLSTTGDFTIELESTCYVQFDQLVYYEKKIKGKLSYGAVHDVSGIQAKKLFLWLPVTGI 122

Query: 129 KVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           +V++ S  ++F VG LSE LPA  F  IP C+  A L     +M
Sbjct: 123 EVDENSGMVQFFVGALSEKLPAKQFEDIPVCKGNAFLRADLASM 166

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BLAST of ClCG03G012060 vs. TrEMBL
Match: A0A0D2SD80_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G341700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-40
Identity = 88/157 (56.05%), Postives = 105/157 (66.88%), Query Frame = 1


Query: 9   SPFSLFLLILAISTQTHLSFST--------RDITLKSTDIHDLLPLYGFPIGLLPNNVKS 68
           SP   +LL L++ +QT LSFST        R +     D+HDLLP YG P G++PNNVKS
Sbjct: 46  SPICFYLLFLSLLSQTQLSFSTTHTPIDHGRPLVTSIADVHDLLPKYGLPKGIVPNNVKS 105

Query: 69  YILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGI 128
           Y LS  G F IELES CYV+F DLVYY + I GKLSYG++ DVSGIQ KKLF WLP+T I
Sbjct: 106 YTLSSTGDFTIELESTCYVQFDDLVYYDKTISGKLSYGAVHDVSGIQAKKLFLWLPVTAI 165

Query: 129 KVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACL 158
           +VN  S  ++F VG  S+  PA  F  IP CRRKA L
Sbjct: 166 EVNGKSGMVQFFVGAFSKEFPAVQFEDIPVCRRKAVL 202

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BLAST of ClCG03G012060 vs. TAIR10
Match: AT1G55265.1 (AT1G55265.1 Protein of unknown function, DUF538)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-40
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 1


Query: 5   STILSPFS-LFLLILAISTQTHLS------------FSTRDI---TLKSTDIHDLLPLYG 64
           S++L+ FS LFL +L++S+  +L             FS+ ++   +L + DIHDLLP YG
Sbjct: 3   SSLLALFSCLFLSLLSLSSSLNLRRPIFSQSNDLDLFSSLNLDRPSLAADDIHDLLPRYG 62

Query: 65  FPIGLLPNNVKSYILSDDGSFEIELESDCYVKFTD-LVYYGRHIKGKLSYGSLTDVSGIQ 124
           FP GLLPNNVKSY +SDDG F ++L S CYVKF+D LV+YG++I GKLSYGS+ DV GIQ
Sbjct: 63  FPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLSYGSVKDVRGIQ 122

Query: 125 VKKLFAWLPITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLE 159
            K+ F WLPIT ++ +  S ++ F+VGF+S+TLPA +F ++P+C R   L+
Sbjct: 123 AKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPASMFENVPSCSRNLNLQ 173

[Close]

BLAST of ClCG03G012060 vs. TAIR10
Match: AT5G19860.1 (AT5G19860.1 Protein of unknown function, DUF538)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 1


Query: 8   LSPF--SLFLLILAISTQTHLSFSTRDITLKSTDIHDLLPLYGFPIGLLPNNVKSYILSD 67
           L PF  S+F+  L + T T  S +  D    ST +++LLP YG P GLLP+ V  + LSD
Sbjct: 3   LYPFFISIFIFSLTLFTTTTHSLNEPDPDSIST-VYELLPKYGLPSGLLPDTVTDFTLSD 62

Query: 68  DGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGIKVN-K 127
           DG F + L + C ++F  LV+Y + I G++ YGS+T++ GIQVKK F WL +  IKV+  
Sbjct: 63  DGRFVVHLPNSCEIEFDYLVHYDKTISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLP 122

Query: 128 GSDSIEFAVGFLSETLPADLFHSIPAC 152
            SDSI F VGF+++ L  D F +I +C
Sbjct: 123 PSDSIYFKVGFINKKLDIDQFKTIHSC 148

[Close]

BLAST of ClCG03G012060 vs. TAIR10
Match: AT5G54530.1 (AT5G54530.1 Protein of unknown function, DUF538)

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-20
Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 1


Query: 40  IHDLLPLYGFPIGLLPNNVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGS 99
           +HD+L   G P GLLP  V SYIL +DG  E+ L + CY KF   V++   ++G LSYGS
Sbjct: 29  VHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEAVVRGNLSYGS 88

Query: 100 LTDVSGIQVKKLFAWLPITGIKV-NKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLE 159
           L  V G+  K+LF WL +  I V N  S  I F +G   + L   LF   P C+    L+
Sbjct: 89  LVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKCKPDGVLK 148

Query: 160 GK 161
            K
Sbjct: 149 KK 150

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BLAST of ClCG03G012060 vs. TAIR10
Match: AT1G61667.1 (AT1G61667.1 Protein of unknown function, DUF538)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-19
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 1


Query: 38  TDIHDLLPLYGFPIGLLPNNVKSYILSDD-GSFEIELESDCYVKFTDLVYYGRHIKGKLS 97
           + I +LL   G P GL P+NV+SY L D  G  E++L++ C+ +F + VY+ R IK  LS
Sbjct: 20  SSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANLS 79

Query: 98  YGSLTDVSGIQVKKLFAWLPITGIKVNKGSDS-IEFAVGFLSETLPADLFHSIPACRRKA 157
           YG L  + G+  ++LF WLP+ GI VN  S   + F +G   + +   LF   P C    
Sbjct: 80  YGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVCYPPG 139

Query: 158 CLEGKTE 163
            +  K E
Sbjct: 140 SIMEKLE 146

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BLAST of ClCG03G012060 vs. TAIR10
Match: AT3G07460.2 (AT3G07460.2 Protein of unknown function, DUF538)

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-13
Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 1


Query: 33  ITLKSTDIHDLLPLYGFPIGLLPNNVKSYILSDD-GSFEIELESDCYVKFTDLVYYGRHI 92
           +  ++  I ++L   G P+GL P  VK + ++ + G F + L   C  K+   ++Y   +
Sbjct: 23  VIAENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIV 82

Query: 93  KGKLSYGSLTDVSGIQVKKLFAWLPITGIKVN-KGSDSIEFAVGFLSETLPADLFHSIPA 152
            G + Y  + D+SGI  ++LF WL + GI+V+   S  I F VG L +     LF +   
Sbjct: 83  SGTIGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRD 142

[Close]

BLAST of ClCG03G012060 vs. NCBI nr
Match: gi|659098800|ref|XP_008450299.1| (PREDICTED: uncharacterized protein LOC103491951 [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 1.0e-68
Identity = 132/164 (80.49%), Postives = 145/164 (88.41%), Query Frame = 1


Query: 1   MASFSTILSPFSLFLLILAISTQTHLSFSTRDITLKSTDIHDLLPLYGFPIGLLPNNVKS 60
           MASFS ILSPFSLFLLIL ISTQTHLSFS RD+ LKS+DIHDLLPLYGFP+GLLP+NVKS
Sbjct: 1   MASFSRILSPFSLFLLILVISTQTHLSFSARDLLLKSSDIHDLLPLYGFPVGLLPSNVKS 60

Query: 61  YILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGI 120
           Y LSDDGSF IEL+S CYV+F DLVYYG+ IKGKLSYGSL+DVSGIQVKKLFAWLPITG+
Sbjct: 61  YTLSDDGSFVIELDSACYVQFADLVYYGKTIKGKLSYGSLSDVSGIQVKKLFAWLPITGM 120

Query: 121 KVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           +V   S SIEF VGFLSE LP  +F SIP CR+KACLEGKTEA+
Sbjct: 121 RVTSDSKSIEFQVGFLSEALPFSMFESIPTCRKKACLEGKTEAV 164

[Close]

BLAST of ClCG03G012060 vs. NCBI nr
Match: gi|449442610|ref|XP_004139074.1| (PREDICTED: uncharacterized protein LOC101202755 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 5.1e-68
Identity = 131/164 (79.88%), Postives = 144/164 (87.80%), Query Frame = 1


Query: 1   MASFSTILSPFSLFLLILAISTQTHLSFSTRDITLKSTDIHDLLPLYGFPIGLLPNNVKS 60
           MASFSTILSPFSLFLLIL  STQTHLSFS RD  L+S+DIHDLLPLYGFP+GLLP+NV S
Sbjct: 1   MASFSTILSPFSLFLLILLFSTQTHLSFSARDFPLRSSDIHDLLPLYGFPVGLLPDNVNS 60

Query: 61  YILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLPITGI 120
           Y LSDDG+FEI+L+S CYV F+DLVYYG++IKGKLS  SL+DVSGI+VKKLFAWLPITGI
Sbjct: 61  YTLSDDGTFEIQLQSSCYVHFSDLVYYGKNIKGKLSNRSLSDVSGIEVKKLFAWLPITGI 120

Query: 121 KVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           KV   S SIEFAVGFLSE LP  +F SIP CRRKACLEGKTEAM
Sbjct: 121 KVTPDSKSIEFAVGFLSEILPVSMFESIPTCRRKACLEGKTEAM 164

[Close]

BLAST of ClCG03G012060 vs. NCBI nr
Match: gi|657951224|ref|XP_008351693.1| (PREDICTED: uncharacterized protein LOC103415116 [Malus domestica])

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-44
Identity = 99/166 (59.64%), Postives = 119/166 (71.69%), Query Frame = 1


Query: 1   MASFSTILSPFSLFLLILAISTQTHLSFSTRDI---------TLKS-TDIHDLLPLYGFP 60
           MAS S   +  SL+LL+L + ++THL+ S RD+         T +S  D+HDLLP YG P
Sbjct: 1   MASAS---AQISLYLLLLTLFSKTHLTLSLRDLKPNPNGSSNTSQSIADVHDLLPQYGLP 60

Query: 61  IGLLPNNVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKK 120
            GLLPNNVKSY L++DGSFEI LES CYV F  LVYY +HIKGKLSYG ++DVSGIQ KK
Sbjct: 61  KGLLPNNVKSYTLTEDGSFEIFLESPCYVHFDQLVYYNKHIKGKLSYGEVSDVSGIQAKK 120

Query: 121 LFAWLPITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKAC 157
           LF W+ +TGI  +KGSDS+EF VG LSE LPA  F  IP C+ KAC
Sbjct: 121 LFIWVSVTGIHRDKGSDSVEFYVGALSEKLPAKQFEDIPDCKNKAC 163

[Close]

BLAST of ClCG03G012060 vs. NCBI nr
Match: gi|694315400|ref|XP_009375496.1| (PREDICTED: uncharacterized protein LOC103964294 [Pyrus x bretschneideri])

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-44
Identity = 99/166 (59.64%), Postives = 119/166 (71.69%), Query Frame = 1


Query: 1   MASFSTILSPFSLFLLILAISTQTHLSFSTRDI---------TLKS-TDIHDLLPLYGFP 60
           MAS S   +  SL+LL+L + ++THL+ S RD+         T +S  D+HDLLP YG P
Sbjct: 1   MASAS---AQISLYLLLLTLFSKTHLTLSLRDLKPNPNGSSNTSQSIADVHDLLPQYGLP 60

Query: 61  IGLLPNNVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKK 120
            GLLPNNVKSY L++DGSFEI LES CYV F  LVYY +HIKGKLSYG ++DVSGIQ KK
Sbjct: 61  KGLLPNNVKSYSLTEDGSFEIFLESPCYVHFDQLVYYNKHIKGKLSYGEVSDVSGIQAKK 120

Query: 121 LFAWLPITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKAC 157
           LF W+ +TGI  +KGSDS+EF VG LSE LPA  F  IP C+ KAC
Sbjct: 121 LFIWVSVTGIHRDKGSDSVEFYVGALSEKLPAKQFEDIPDCKNKAC 163

[Close]

BLAST of ClCG03G012060 vs. NCBI nr
Match: gi|590582793|ref|XP_007014722.1| (Uncharacterized protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-44
Identity = 94/168 (55.95%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 5   STILSPFSLFLLILAISTQTHLSFST--------RDITLKSTDIHDLLPLYGFPIGLLPN 64
           S + +P SL+LL+LA+  QTHLSFST        R +++ ++D+HDLLP YG P G+LPN
Sbjct: 61  SKMAAPISLYLLLLALFCQTHLSFSTTGPAIDHSRPLSISTSDVHDLLPTYGLPKGILPN 120

Query: 65  NVKSYILSDDGSFEIELESDCYVKFTDLVYYGRHIKGKLSYGSLTDVSGIQVKKLFAWLP 124
           NVKSY LS  G F IELES CYV+F  LVYY + IKGKLSYG++ DVSGIQ KKLF WLP
Sbjct: 121 NVKSYTLSTTGDFTIELESTCYVQFDQLVYYEKKIKGKLSYGAVHDVSGIQAKKLFLWLP 180

Query: 125 ITGIKVNKGSDSIEFAVGFLSETLPADLFHSIPACRRKACLEGKTEAM 165
           +TGI+V++ S  ++F VG LSE LPA  F  IP C+  A L     +M
Sbjct: 181 VTGIEVDENSGMVQFFVGALSEKLPAKQFEDIPVCKGNAFLRADLASM 228

The following BLAST results are available for this feature:

BLAST of ClCG03G012060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0C4_CUCSA	3.6e-68	79.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630320 PE=4 SV=1	[more]
A0A061GS48_THECC	1.2e-44	55.95	Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_040161 PE...	[more]
M5W1G2_PRUPE	2.7e-44	59.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012400mg PE=4 SV=1	[more]
A0A061GR70_THECC	2.7e-44	56.71	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_040161 PE=4 SV=1	[more]
A0A0D2SD80_GOSRA	2.4e-40	56.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G341700 PE=4 SV=1	[more]

BLAST of ClCG03G012060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55265.1	1.6e-40	50.29	Protein of unknown function, DUF538	[more]
AT5G19860.1	1.2e-27	44.90	Protein of unknown function, DUF538	[more]
AT5G54530.1	4.2e-20	41.80	Protein of unknown function, DUF538	[more]
AT1G61667.1	6.1e-19	37.80	Protein of unknown function, DUF538	[more]
AT3G07460.2	8.5e-13	30.58	Protein of unknown function, DUF538	[more]

BLAST of ClCG03G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098800\|ref\|XP_008450299.1\|	1.0e-68	80.49	PREDICTED: uncharacterized protein LOC103491951 [Cucumis melo]	[more]
gi\|449442610\|ref\|XP_004139074.1\|	5.1e-68	79.88	PREDICTED: uncharacterized protein LOC101202755 [Cucumis sativus]	[more]
gi\|657951224\|ref\|XP_008351693.1\|	1.4e-44	59.64	PREDICTED: uncharacterized protein LOC103415116 [Malus domestica]	[more]
gi\|694315400\|ref\|XP_009375496.1\|	1.8e-44	59.64	PREDICTED: uncharacterized protein LOC103964294 [Pyrus x bretschneideri]	[more]
gi\|590582793\|ref\|XP_007014722.1\|	1.8e-44	55.95	Uncharacterized protein isoform 2, partial [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007493	DUF538

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009735	response to cytokinin
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G012060.1	ClCG03G012060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007493	Protein of unknown function DUF538	GENE3D	G3DSA:2.30.240.10		coord: 35..154 score: 2.3
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 41..145 score: 4.5
IPR007493	Protein of unknown function DUF538	unknown	SSF141562	At5g01610-like	coord: 15..153 score: 3.27
None	No IPR available	PANTHER	PTHR31676	FAMILY NOT NAMED	coord: 7..164 score: 2.3
None	No IPR available	PANTHER	PTHR31676:SF6	SUBFAMILY NOT NAMED	coord: 7..164 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G012060	Csa1G630320	Cucumber (Chinese Long) v2	cuwcgB043
ClCG03G012060	MELO3C015079	Melon (DHL92) v3.5.1	mewcgB241
ClCG03G012060	Cla001765	Watermelon (97103) v1	wcgwmB230
ClCG03G012060	Cla97C03G062220	Watermelon (97103) v2	wcgwmbB186
ClCG03G012060	Bhi02G001203	Wax gourd	wcgwgoB370
ClCG03G012060	CSPI01G31330	Wild cucumber (PI 183967)	cpiwcgB046
ClCG03G012060	Cucsa.355820	Cucumber (Gy14) v1	cgywcgB606
ClCG03G012060	CmaCh10G008690	Cucurbita maxima (Rimu)	cmawcgB062
ClCG03G012060	CmoCh10G009090	Cucurbita moschata (Rifu)	cmowcgB054
ClCG03G012060	Lsi06G006350	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G012060	Cp4.1LG18g02150	Cucurbita pepo (Zucchini)	cpewcgB324
ClCG03G012060	Cp4.1LG04g12570	Cucurbita pepo (Zucchini)	cpewcgB606
ClCG03G012060	CsGy1G030500	Cucumber (Gy14) v2	cgybwcgB041
ClCG03G012060	MELO3C015079.2	Melon (DHL92) v3.6.1	medwcgB232
ClCG03G012060	Carg17837	Silver-seed gourd	carwcgB0946
ClCG03G012060	Carg22684	Silver-seed gourd	carwcgB0520
ClCG03G012060	CsaV3_1G043700	Cucumber (Chinese Long) v3	cucwcgB046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G012060	Wax gourd	wcgwgoB362
ClCG03G012060	Cucumber (Gy14) v1	cgywcgB607
ClCG03G012060	Cucurbita maxima (Rimu)	cmawcgB054
ClCG03G012060	Cucurbita maxima (Rimu)	cmawcgB112
ClCG03G012060	Cucurbita maxima (Rimu)	cmawcgB113
ClCG03G012060	Cucurbita moschata (Rifu)	cmowcgB045
ClCG03G012060	Cucurbita moschata (Rifu)	cmowcgB099
ClCG03G012060	Cucurbita moschata (Rifu)	cmowcgB101
ClCG03G012060	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G012060	Cucumber (Chinese Long) v2	cuwcgB046
ClCG03G012060	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G012060	Cucurbita pepo (Zucchini)	cpewcgB014
ClCG03G012060	Cucurbita pepo (Zucchini)	cpewcgB327
ClCG03G012060	Cucumber (Gy14) v2	cgybwcgB043
ClCG03G012060	Silver-seed gourd	carwcgB0521
ClCG03G012060	Silver-seed gourd	carwcgB0944
ClCG03G012060	Cucumber (Chinese Long) v3	cucwcgB050