ClCG01G023890 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G023890
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 37129741 .. 37130267 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCGCTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACCTCTCTTTTCTCTTTTGTTTCAAATTCAGATTTGATGCTTTGGTTTCAAATTGGGAACCTAAATTACCAAATAATGTCTTCATACATTCCTTTGGGTTTAGATTTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

mRNA sequence

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCGCTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

Coding sequence (CDS)

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTCATTGCCGCTTCCAATACAACTCCAAAGGTTCAGAGAGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGACGCCACAGAATTTGGTTTTGATTACGAGACAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCGGGTCAACTTTTCAATCAAACGGATTTGCATACGAAACTTCAGACAGTGTTGAATTCTCGTAGTAGAAGACATAATAAAAGTTGTTTCAAATTCAGAGAAAATCTGAAAGCTGTCATCTTTAGTGCTATGCTTCCATCTTTCCTTAATGGGGATGGATGA

Protein sequence

MSIPELPFSPSNFIAASNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFRENLKAVIFSAMLPSFLNGDG

Homology

[Close]

BLAST of ClCG01G023890 vs. TrEMBL
Match: A0A0A0KLQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519730 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1   MSIPELPFSPSNFIAASNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSN        PKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSN--------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFR 100
           +VYL+SSGQ+ NQTDLHTKLQTVLNSRSR H KSCFKFR
Sbjct: 61  TVYLTSSGQVLNQTDLHTKLQTVLNSRSRTH-KSCFKFR 90

[Close]

BLAST of ClCG01G023890 vs. TrEMBL
Match: B9H2F1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05950g PE=4 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 1  MSIPELPFSPSNFIAASNTTPK-VQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ 60
          M I +   SPS  +  S+++PK +QRVSK  SDRLL KFFDATEF FDYE SG+WSPP++
Sbjct: 1  MDISKCSSSPS--LPESSSSPKRIQRVSKFVSDRLLDKFFDATEFDFDYEQSGIWSPPIR 60

Query: 61 RSVYLSSSGQLFNQTDLHTKLQTVLNS-RSRRHNKSC 96
          RS +LSS G++F + ++  KL  V+++ R+RRHNK+C
Sbjct: 61 RSAFLSSPGRIFTEEEMLEKLGNVMDARRARRHNKAC 95

[Close]

BLAST of ClCG01G023890 vs. TrEMBL
Match: D7TJP6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01630 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 9  SPSNFIAASNTTP-KVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSS 68
          SPS   A+ + +P +VQ VSKS SDRLLQKFFD++EF FDYE SGLWSPP++RSV+LSS 
Sbjct: 7  SPSLPGASPSPSPLRVQVVSKSVSDRLLQKFFDSSEFDFDYEQSGLWSPPIRRSVFLSSP 66

Query: 69 GQLFNQTDLHTKLQTVLNSRSRRHNKSCF 97
          G++FN+ ++  KL++V  SR  R  + CF
Sbjct: 67 GKIFNEHEMLAKLKSVTGSRRGRKRRVCF 95

[Close]

BLAST of ClCG01G023890 vs. TrEMBL
Match: M5WJI2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018497mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 19  TTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQTDLHT 78
           T P VQ V KSTSDRLLQKFFDA EF FDYE SGLWSPP++R+V+LSS G++F + ++  
Sbjct: 26  TAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLSSQGRIFTEQEMLA 85

Query: 79  KLQTVLNSRSRRHNKSC 96
           KL T+ ++ +  H   C
Sbjct: 86  KLSTLTDAPTSTHKACC 102

[Close]

BLAST of ClCG01G023890 vs. TrEMBL
Match: B9S8D0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 15 AASNTTP-KVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQ 74
          A+S+ +P K+Q VSKS SDRLL KFFD +EF FDY+ SG+WSPP++RS YLSS GQ+F +
Sbjct: 6  ASSSFSPQKIQLVSKSVSDRLLDKFFDVSEFDFDYQQSGIWSPPIKRSAYLSSPGQIFTE 65

Query: 75 TDLHTKLQTVLNSRSRRHNKS 95
           ++  KL+ +++ R  R +K+
Sbjct: 66 EEMLKKLRNIMDERRGRRHKA 86

[Close]

BLAST of ClCG01G023890 vs. NCBI nr
Match: gi|700194118|gb|KGN49322.1| (hypothetical protein Csa_6G519730 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1   MSIPELPFSPSNFIAASNTTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQR 60
           MSIPELPFSPSN        PKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPLQR
Sbjct: 1   MSIPELPFSPSN--------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQR 60

Query: 61  SVYLSSSGQLFNQTDLHTKLQTVLNSRSRRHNKSCFKFR 100
           +VYL+SSGQ+ NQTDLHTKLQTVLNSRSR H KSCFKFR
Sbjct: 61  TVYLTSSGQVLNQTDLHTKLQTVLNSRSRTH-KSCFKFR 90

[Close]

BLAST of ClCG01G023890 vs. NCBI nr
Match: gi|566165158|ref|XP_002305728.2| (hypothetical protein POPTR_0004s05950g [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 1  MSIPELPFSPSNFIAASNTTPK-VQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQ 60
          M I +   SPS  +  S+++PK +QRVSK  SDRLL KFFDATEF FDYE SG+WSPP++
Sbjct: 1  MDISKCSSSPS--LPESSSSPKRIQRVSKFVSDRLLDKFFDATEFDFDYEQSGIWSPPIR 60

Query: 61 RSVYLSSSGQLFNQTDLHTKLQTVLNS-RSRRHNKSC 96
          RS +LSS G++F + ++  KL  V+++ R+RRHNK+C
Sbjct: 61 RSAFLSSPGRIFTEEEMLEKLGNVMDARRARRHNKAC 95

[Close]

BLAST of ClCG01G023890 vs. NCBI nr
Match: gi|694323310|ref|XP_009352732.1| (PREDICTED: uncharacterized protein LOC103944063 [Pyrus x bretschneideri])

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 19  TTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQTDLHT 78
           T+P VQ V KSTSDRLLQKFFDA EF FDYE SGLWSPP++R+V+LSS G++F + ++  
Sbjct: 29  TSPTVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVRRTVFLSSQGKIFTEREMLA 88

Query: 79  KLQTVLNSRSRRHNKSCF 97
           +L T+ ++ + RH+K CF
Sbjct: 89  RLSTLTDAPTARHDKVCF 106

[Close]

BLAST of ClCG01G023890 vs. NCBI nr
Match: gi|657983080|ref|XP_008383608.1| (PREDICTED: uncharacterized protein LOC103446302 [Malus domestica])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 19  TTPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSSGQLFNQTDLHT 78
           T+P VQ V KSTSDRLLQKFFDA EF FDYE SGLWSPP++R+V++SS G++F + ++  
Sbjct: 30  TSPTVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVRRTVFVSSQGKIFTEQEMLA 89

Query: 79  KLQTVLNSRSRRHNKSCF 97
           +L T+  +   RH+K+CF
Sbjct: 90  RLSTLTEAPPARHDKACF 107

[Close]

BLAST of ClCG01G023890 vs. NCBI nr
Match: gi|225443740|ref|XP_002268719.1| (PREDICTED: uncharacterized protein LOC100254835 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 9  SPSNFIAASNTTP-KVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPLQRSVYLSSS 68
          SPS   A+ + +P +VQ VSKS SDRLLQKFFD++EF FDYE SGLWSPP++RSV+LSS 
Sbjct: 7  SPSLPGASPSPSPLRVQVVSKSVSDRLLQKFFDSSEFDFDYEQSGLWSPPIRRSVFLSSP 66

Query: 69 GQLFNQTDLHTKLQTVLNSRSRRHNKSCF 97
          G++FN+ ++  KL++V  SR  R  + CF
Sbjct: 67 GKIFNEHEMLAKLKSVTGSRRGRKRRVCF 95

The following BLAST results are available for this feature:

BLAST of ClCG01G023890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ8_CUCSA	2.4e-37	84.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519730 PE=4 SV=1	[more]
B9H2F1_POPTR	1.7e-19	54.64	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05950g PE=4 SV=2	[more]
D7TJP6_VITVI	1.4e-18	57.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01630 PE=4 SV=...	[more]
M5WJI2_PRUPE	2.7e-17	57.14	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018497mg PE=4 S...	[more]
B9S8D0_RICCO	2.3e-16	53.09	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251020 PE=4 SV=1	[more]

BLAST of ClCG01G023890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194118\|gb\|KGN49322.1\|	3.4e-37	84.85	hypothetical protein Csa_6G519730 [Cucumis sativus]	[more]
gi\|566165158\|ref\|XP_002305728.2\|	2.4e-19	54.64	hypothetical protein POPTR_0004s05950g [Populus trichocarpa]	[more]
gi\|694323310\|ref\|XP_009352732.1\|	5.4e-19	58.97	PREDICTED: uncharacterized protein LOC103944063 [Pyrus x bretschneideri]	[more]
gi\|657983080\|ref\|XP_008383608.1\|	1.2e-18	57.69	PREDICTED: uncharacterized protein LOC103446302 [Malus domestica]	[more]
gi\|225443740\|ref\|XP_002268719.1\|	2.1e-18	57.30	PREDICTED: uncharacterized protein LOC100254835 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G023890.1	ClCG01G023890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34287	FAMILY NOT NAMED	coord: 22..100 score: 3.9
None	No IPR available	PANTHER	PTHR34287:SF2	SUBFAMILY NOT NAMED	coord: 22..100 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G023890	Csa6G519730	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G023890	MELO3C007199	Melon (DHL92) v3.5.1	mewcgB515
ClCG01G023890	Bhi07G000178	Wax gourd	wcgwgoB248
ClCG01G023890	CSPI06G35540	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G023890	Cucsa.047110	Cucumber (Gy14) v1	cgywcgB022
ClCG01G023890	CmaCh07G001730	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G023890	CmaCh03G013340	Cucurbita maxima (Rimu)	cmawcgB576
ClCG01G023890	CmoCh07G001680	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G023890	CmoCh03G013350	Cucurbita moschata (Rifu)	cmowcgB573
ClCG01G023890	Lsi01G002260	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G023890	Cp4.1LG10g05520	Cucurbita pepo (Zucchini)	cpewcgB062
ClCG01G023890	Cp4.1LG19g06510	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G023890	CsGy6G035030	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G023890	MELO3C007199.2	Melon (DHL92) v3.6.1	medwcgB510
ClCG01G023890	Carg15357	Silver-seed gourd	carwcgB0531
ClCG01G023890	Carg23111	Silver-seed gourd	carwcgB0931
ClCG01G023890	CsaV3_6G051040	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G023890	Cucumber (Gy14) v1	cgywcgB384
ClCG01G023890	Cucurbita maxima (Rimu)	cmawcgB185
ClCG01G023890	Cucurbita maxima (Rimu)	cmawcgB344
ClCG01G023890	Cucurbita moschata (Rifu)	cmowcgB176
ClCG01G023890	Cucurbita moschata (Rifu)	cmowcgB339
ClCG01G023890	Wild cucumber (PI 183967)	cpiwcgB028
ClCG01G023890	Cucumber (Chinese Long) v2	cuwcgB025
ClCG01G023890	Melon (DHL92) v3.5.1	mewcgB138
ClCG01G023890	Watermelon (97103) v1	wcgwmB125
ClCG01G023890	Watermelon (97103) v1	wcgwmB129
ClCG01G023890	Watermelon (97103) v1	wcgwmB141
ClCG01G023890	Cucurbita pepo (Zucchini)	cpewcgB027
ClCG01G023890	Cucurbita pepo (Zucchini)	cpewcgB450
ClCG01G023890	Bottle gourd (USVL1VR-Ls)	lsiwcgB170
ClCG01G023890	Cucumber (Gy14) v2	cgybwcgB024
ClCG01G023890	Melon (DHL92) v3.6.1	medwcgB131
ClCG01G023890	Silver-seed gourd	carwcgB0143
ClCG01G023890	Silver-seed gourd	carwcgB0772
ClCG01G023890	Cucumber (Chinese Long) v3	cucwcgB027
ClCG01G023890	Cucumber (Chinese Long) v3	cucwcgB562
ClCG01G023890	Watermelon (97103) v2	wcgwmbB089
ClCG01G023890	Watermelon (97103) v2	wcgwmbB104
ClCG01G023890	Wax gourd	wcgwgoB242
ClCG01G023890	Watermelon (Charleston Gray)	wcgwcgB093
ClCG01G023890	Watermelon (Charleston Gray)	wcgwcgB110