ClCG01G016720 (gene) Watermelon (Charleston Gray)

NameClCG01G016720
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 31205301 .. 31205537 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

mRNA sequence

ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

Coding sequence (CDS)

ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

Protein sequence

MIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
BLAST of ClCG01G016720 vs. TrEMBL
Match: A0A0A0KGB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1

Query: 5  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRVHQKSAGNGQQFMTNKAELPQD 64
          +V  + +E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T KAELPQD
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 65 FRPTSPGHSPGVGHHINN 79
          FRPTSPGHSPGVGHHINN
Sbjct: 61 FRPTSPGHSPGVGHHINN 78

BLAST of ClCG01G016720 vs. TrEMBL
Match: W9R6N3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 11 HESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSP 70
          HE + VE RHLK+TR ++CSK   +  + H   A +  +  T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 71 GVGHHINN 79
          GVGH INN
Sbjct: 64 GVGHSINN 68

BLAST of ClCG01G016720 vs. TrEMBL
Match: A0A0S3R503_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G344400 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 1  MIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQ------QFMTNK 60
          ++++L   L H+SV+VE RHL++  C++CSK     P+ H  S G+G+      Q  + +
Sbjct: 11 LVLLLFFILHHQSVFVEGRHLRSPLCEECSK-----PQNHTMS-GDGKSDDVVHQEGSRR 70

Query: 61 AELP-QDFRPTSPGHSPGVGHHINN 79
           E    DFRPT+PGHSPGVGH INN
Sbjct: 71 VEYEVDDFRPTTPGHSPGVGHSINN 89

BLAST of ClCG01G016720 vs. TrEMBL
Match: V7CCL6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G245600g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1

Query: 2   IIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELP-QD 61
           ++ L   LSH+S++V  RHL++  C++CSK  +     H  S     Q  + + E    D
Sbjct: 76  VLFLFFILSHQSLFVHGRHLRSPLCEECSKHQNNSMSGHGISDHEVHQEGSRRVEYEVDD 135

Query: 62  FRPTSPGHSPGVGHHINN 79
           FRPT+PGHSPGVGH INN
Sbjct: 136 FRPTTPGHSPGVGHSINN 153

BLAST of ClCG01G016720 vs. TrEMBL
Match: A0A151SXM3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1

Query: 3  IVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNG-------QQFMTNKA 62
          ++L L L H+ ++V+ RHL++  CK+CSK    P R     A +G       QQ  + + 
Sbjct: 12 VLLFLVLHHQVLFVQGRHLRSQLCKECSK----PQRNTISVALHGDGDHIGVQQEGSRRV 71

Query: 63 ELP-QDFRPTSPGHSPGVGHHINN 79
          E    DFRPT+PGHSPGVGH INN
Sbjct: 72 EYEVDDFRPTTPGHSPGVGHSINN 91

BLAST of ClCG01G016720 vs. NCBI nr
Match: gi|700193309|gb|KGN48513.1| (hypothetical protein Csa_6G490770 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1

Query: 5  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRVHQKSAGNGQQFMTNKAELPQD 64
          +V  + +E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T KAELPQD
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 65 FRPTSPGHSPGVGHHINN 79
          FRPTSPGHSPGVGHHINN
Sbjct: 61 FRPTSPGHSPGVGHHINN 78

BLAST of ClCG01G016720 vs. NCBI nr
Match: gi|590704617|ref|XP_007047208.1| (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1

Query: 1  MIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRVHQKSAGNGQQFMTNK 60
          +++VL+LC       VE RHL++  CKKCS+       +         S G+GQ+  T+K
Sbjct: 12 LLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSGQE-QTSK 71

Query: 61 AELPQDFRPTSPGHSPGVGHHINN 79
          AE   DFRPTSPGHSPGVGH I N
Sbjct: 72 AENIDDFRPTSPGHSPGVGHSIKN 94

BLAST of ClCG01G016720 vs. NCBI nr
Match: gi|703091524|ref|XP_010094382.1| (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 11 HESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSP 70
          HE + VE RHLK+TR ++CSK   +  + H   A +  +  T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 71 GVGHHINN 79
          GVGH INN
Sbjct: 64 GVGHSINN 68

BLAST of ClCG01G016720 vs. NCBI nr
Match: gi|697095879|ref|XP_009613627.1| (PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 2  IIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQ--FMTNKAELPQ 61
          I  L+L LSHE ++VE RHLK+  CK CSK +    +V  K + +  Q   +++KAE   
Sbjct: 13 IFFLLLILSHEILHVEARHLKSKHCKHCSKTL----KVKNKGSPSSTQAAAVSSKAENID 72

Query: 62 DFRPTSPGHSPGVGHHINN 79
           F+P+ PGHSPGVGH I+N
Sbjct: 73 GFQPSGPGHSPGVGHSIHN 87

BLAST of ClCG01G016720 vs. NCBI nr
Match: gi|223538386|gb|EEF39992.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1

Query: 4   VLVLCLSHESVYV-ECRHLKATRCKKCSKLISAPPRV----HQKSAG---NGQQFMTNKA 63
           +LVL L HE++YV E RHLK   CKKCS+   +   V    H  +     NG Q   +K 
Sbjct: 19  LLVLILCHEAIYVVEGRHLKPKLCKKCSRRSESSLDVSKDGHHNTTTHLLNGDQEKISKM 78

Query: 64  ELPQDFRPTSPGHSPGVGHHINN 79
           +   DFRPT+PGHSPGVGH I N
Sbjct: 79  DFVDDFRPTAPGHSPGVGHSIQN 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KGB6_CUCSA1.8e-2271.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1[more]
W9R6N3_9ROSA3.6e-1052.94Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1[more]
A0A0S3R503_PHAAN6.7e-0944.71Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G344400 PE=... [more]
V7CCL6_PHAVU2.6e-0843.59Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G245600g PE=4 SV=1[more]
A0A151SXM3_CAJCA1.7e-0744.05Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700193309|gb|KGN48513.1|2.6e-2271.79hypothetical protein Csa_6G490770 [Cucumis sativus][more]
gi|590704617|ref|XP_007047208.1|3.9e-1046.43TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao][more]
gi|703091524|ref|XP_010094382.1|5.1e-1052.94hypothetical protein L484_008270 [Morus notabilis][more]
gi|697095879|ref|XP_009613627.1|1.5e-0946.84PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis][more]
gi|223538386|gb|EEF39992.1|2.0e-0948.19conserved hypothetical protein [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G016720.1ClCG01G016720.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G016720Melon (DHL92) v3.6.1medwcgB083
ClCG01G016720Melon (DHL92) v3.6.1medwcgB462
ClCG01G016720Melon (DHL92) v3.6.1medwcgB509
ClCG01G016720Silver-seed gourdcarwcgB0173
ClCG01G016720Silver-seed gourdcarwcgB0397
ClCG01G016720Silver-seed gourdcarwcgB0745
ClCG01G016720Silver-seed gourdcarwcgB0778
ClCG01G016720Cucumber (Chinese Long) v3cucwcgB130
ClCG01G016720Cucumber (Chinese Long) v3cucwcgB563
ClCG01G016720Watermelon (97103) v2wcgwmbB089
ClCG01G016720Watermelon (97103) v2wcgwmbB101
ClCG01G016720Wax gourdwcgwgoB221
ClCG01G016720Wax gourdwcgwgoB223
ClCG01G016720Watermelon (Charleston Gray)wcgwcgB086
ClCG01G016720Watermelon (Charleston Gray)wcgwcgB089
ClCG01G016720Cucumber (Gy14) v1cgywcgB134
ClCG01G016720Cucumber (Gy14) v1cgywcgB394
ClCG01G016720Cucurbita maxima (Rimu)cmawcgB096
ClCG01G016720Cucurbita maxima (Rimu)cmawcgB457
ClCG01G016720Cucurbita maxima (Rimu)cmawcgB579
ClCG01G016720Cucurbita moschata (Rifu)cmowcgB012
ClCG01G016720Cucurbita moschata (Rifu)cmowcgB086
ClCG01G016720Cucurbita moschata (Rifu)cmowcgB395
ClCG01G016720Cucurbita moschata (Rifu)cmowcgB575
ClCG01G016720Wild cucumber (PI 183967)cpiwcgB297
ClCG01G016720Wild cucumber (PI 183967)cpiwcgB453
ClCG01G016720Wild cucumber (PI 183967)cpiwcgB567
ClCG01G016720Cucumber (Chinese Long) v2cuwcgB538
ClCG01G016720Melon (DHL92) v3.5.1mewcgB083
ClCG01G016720Melon (DHL92) v3.5.1mewcgB193
ClCG01G016720Melon (DHL92) v3.5.1mewcgB469
ClCG01G016720Melon (DHL92) v3.5.1mewcgB514
ClCG01G016720Watermelon (97103) v1wcgwmB162
ClCG01G016720Watermelon (97103) v1wcgwmB165
ClCG01G016720Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G016720Cucurbita pepo (Zucchini)cpewcgB588
ClCG01G016720Bottle gourd (USVL1VR-Ls)lsiwcgB090
ClCG01G016720Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G016720Bottle gourd (USVL1VR-Ls)lsiwcgB270
ClCG01G016720Cucumber (Gy14) v2cgybwcgB265
ClCG01G016720Cucumber (Gy14) v2cgybwcgB498