CmoCh07G007290 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G007290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTRNA Delta(2)-isopentenylpyrophosphate transferase, putative
LocationCmo_Chr07 : 3293737 .. 3294036 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAACTCAAAGGCTTTCTGGGGTTTGTGTTTTTATTCTTTTTTTGATTTTATGTTTAAGCCATGAGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTCATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAGGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA

mRNA sequence

ATGAAGACAACTCAAAGGCTTTCTGGGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTCATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAGGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA

Coding sequence (CDS)

ATGAAGACAACTCAAAGGCTTTCTGGGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTCATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAGGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA
Homology
[Close]
BLAST of CmoCh07G007290 vs. TrEMBL
Match: A0A0A0KGB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.3e-17
Identity = 51/77 (66.23%), Postives = 55/77 (71.43%), Query Frame = 1 

Query: 11 VYVECRHLKSSR-CKKCTKFI--NPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDF 70
          VYVECRHLKSSR CKKC+K I  +PP          P  +  AGN Q+F T KAE PQDF
Sbjct: 10 VYVECRHLKSSRSCKKCSKSIGTSPPP--------PPAHLKSAGNPQQFTTIKAELPQDF 69

Query: 71 RPTSPGHSPGVGHHINN 85
          RPTSPGHSPGVGHHINN
Sbjct: 70 RPTSPGHSPGVGHHINN 78

[Close]
BLAST of CmoCh07G007290 vs. TrEMBL
Match: W9R6N3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V+ VE RHLKS+R ++C+K         G ++ +      A +R E +TSKAE   DFRP
Sbjct: 6  VINVEGRHLKSTRFRRCSKS--------GDQQHST----YAYSRPEVQTSKAEHVDDFRP 65

Query: 70 TSPGHSPGVGHHINN 85
          T+PGHSPGVGH INN
Sbjct: 66 TAPGHSPGVGHSINN 68

[Close]
BLAST of CmoCh07G007290 vs. TrEMBL
Match: A0A061DGB8_THECC (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao GN=TCM_000584 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-07
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V  VE RHL+S  CKKC++     A     K    G     G+ QE +TSKAE   DFRP
Sbjct: 24 VYNVEGRHLRSKSCKKCSR---QRADQNTLKMTKNGSHSSTGSGQE-QTSKAENIDDFRP 83

Query: 70 TSPGHSPGVGHHINN 85
          TSPGHSPGVGH I N
Sbjct: 84 TSPGHSPGVGHSIKN 94

[Close]
BLAST of CmoCh07G007290 vs. TrEMBL
Match: A0A151SXM3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V++V+ RHL+S  CK+C+K   P    +    A  GD    G +QE       +  DFRP
Sbjct: 22 VLFVQGRHLRSQLCKECSK---PQRNTIS--VALHGDGDHIGVQQEGSRRVEYEVDDFRP 81

Query: 70 TSPGHSPGVGHHINN 85
          T+PGHSPGVGH INN
Sbjct: 82 TTPGHSPGVGHSINN 91

[Close]
BLAST of CmoCh07G007290 vs. TrEMBL
Match: A0A067KI08_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12366 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-06
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLG----GKKAAPGDVGLAGNRQEFKTSKAEQPQ 69
          +V VE RHLK+  CKK +   N     L     G K+    V L GN++  KTSK +   
Sbjct: 6  LVCVEGRHLKTKLCKKGSSGNNHSKSTLNFSKDGYKSNSHQV-LIGNQE--KTSKMDYVD 65

Query: 70 DFRPTSPGHSPGVGHHINN 85
          +FRPT+PGHSPGVGH INN
Sbjct: 66 EFRPTTPGHSPGVGHSINN 81

[Close]
BLAST of CmoCh07G007290 vs. NCBI nr
Match: gi|700193309|gb|KGN48513.1| (hypothetical protein Csa_6G490770 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 51/77 (66.23%), Postives = 55/77 (71.43%), Query Frame = 1 

Query: 11 VYVECRHLKSSR-CKKCTKFI--NPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDF 70
          VYVECRHLKSSR CKKC+K I  +PP          P  +  AGN Q+F T KAE PQDF
Sbjct: 10 VYVECRHLKSSRSCKKCSKSIGTSPPP--------PPAHLKSAGNPQQFTTIKAELPQDF 69

Query: 71 RPTSPGHSPGVGHHINN 85
          RPTSPGHSPGVGHHINN
Sbjct: 70 RPTSPGHSPGVGHHINN 78

[Close]
BLAST of CmoCh07G007290 vs. NCBI nr
Match: gi|703091524|ref|XP_010094382.1| (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V+ VE RHLKS+R ++C+K         G ++ +      A +R E +TSKAE   DFRP
Sbjct: 6  VINVEGRHLKSTRFRRCSKS--------GDQQHST----YAYSRPEVQTSKAEHVDDFRP 65

Query: 70 TSPGHSPGVGHHINN 85
          T+PGHSPGVGH INN
Sbjct: 66 TAPGHSPGVGHSINN 68

[Close]
BLAST of CmoCh07G007290 vs. NCBI nr
Match: gi|590704617|ref|XP_007047208.1| (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V  VE RHL+S  CKKC++     A     K    G     G+ QE +TSKAE   DFRP
Sbjct: 24 VYNVEGRHLRSKSCKKCSR---QRADQNTLKMTKNGSHSSTGSGQE-QTSKAENIDDFRP 83

Query: 70 TSPGHSPGVGHHINN 85
          TSPGHSPGVGH I N
Sbjct: 84 TSPGHSPGVGHSIKN 94

[Close]
BLAST of CmoCh07G007290 vs. NCBI nr
Match: gi|1012348355|gb|KYP59546.1| (hypothetical protein KK1_014982 [Cajanus cajan])

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 69
          V++V+ RHL+S  CK+C+K   P    +    A  GD    G +QE       +  DFRP
Sbjct: 22 VLFVQGRHLRSQLCKECSK---PQRNTIS--VALHGDGDHIGVQQEGSRRVEYEVDDFRP 81

Query: 70 TSPGHSPGVGHHINN 85
          T+PGHSPGVGH INN
Sbjct: 82 TTPGHSPGVGHSINN 91

[Close]
BLAST of CmoCh07G007290 vs. NCBI nr
Match: gi|643722026|gb|KDP31905.1| (hypothetical protein JCGZ_12366 [Jatropha curcas])

HSP 1 Score: 58.5 bits (140), Expect = 6.3e-06
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 10 VVYVECRHLKSSRCKKCTKFINPPAVNLG----GKKAAPGDVGLAGNRQEFKTSKAEQPQ 69
          +V VE RHLK+  CKK +   N     L     G K+    V L GN++  KTSK +   
Sbjct: 6  LVCVEGRHLKTKLCKKGSSGNNHSKSTLNFSKDGYKSNSHQV-LIGNQE--KTSKMDYVD 65

Query: 70 DFRPTSPGHSPGVGHHINN 85
          +FRPT+PGHSPGVGH INN
Sbjct: 66 EFRPTTPGHSPGVGHSINN 81

The following BLAST results are available for this feature:
BLAST of CmoCh07G007290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G007290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGB6_CUCSA7.3e-1766.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1[more]
W9R6N3_9ROSA1.0e-0749.33Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1[more]
A0A061DGB8_THECC2.3e-0752.00TRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ... [more]
A0A151SXM3_CAJCA3.4e-0645.33Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1[more]
A0A067KI08_JATCU4.4e-0648.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12366 PE=4 SV=1[more]
BLAST of CmoCh07G007290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G007290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193309|gb|KGN48513.1|1.0e-1666.23hypothetical protein Csa_6G490770 [Cucumis sativus][more]
gi|703091524|ref|XP_010094382.1|1.5e-0749.33hypothetical protein L484_008270 [Morus notabilis][more]
gi|590704617|ref|XP_007047208.1|3.4e-0752.00TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao][more]
gi|1012348355|gb|KYP59546.1|4.8e-0645.33hypothetical protein KK1_014982 [Cajanus cajan][more]
gi|643722026|gb|KDP31905.1|6.3e-0648.10hypothetical protein JCGZ_12366 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G007290.1CmoCh07G007290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G007290CmaCh07G007130Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G007290Cla001830Watermelon (97103) v1cmowmB816
CmoCh07G007290Csa6G490770Cucumber (Chinese Long) v2cmocuB865
CmoCh07G007290ClCG01G016720Watermelon (Charleston Gray)cmowcgB755
CmoCh07G007290Lsi01G009880Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G007290Cp4.1LG19g11350Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G007290CsaV3_6G043140Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G007290Bhi03G001451Wax gourdcmowgoB1053
CmoCh07G007290CsGy6G027460Cucumber (Gy14) v2cgybcmoB843
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G007290Cucumber (Chinese Long) v3cmocucB0991
CmoCh07G007290Cucumber (Chinese Long) v3cmocucB1023
CmoCh07G007290Watermelon (97103) v2cmowmbB849
CmoCh07G007290Watermelon (97103) v2cmowmbB856
CmoCh07G007290Wax gourdcmowgoB1043
CmoCh07G007290Melon (DHL92) v3.5.1cmomeB793
CmoCh07G007290Cucurbita moschata (Rifu)cmocmoB131
CmoCh07G007290Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G007290Cucurbita moschata (Rifu)cmocmoB376
CmoCh07G007290Cucurbita moschata (Rifu)cmocmoB398
CmoCh07G007290Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G007290Cucumber (Gy14) v1cgycmoB0233
CmoCh07G007290Cucumber (Gy14) v1cgycmoB0633
CmoCh07G007290Cucumber (Gy14) v1cgycmoB1021
CmoCh07G007290Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G007290Cucurbita maxima (Rimu)cmacmoB161
CmoCh07G007290Cucurbita maxima (Rimu)cmacmoB534
CmoCh07G007290Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G007290Wild cucumber (PI 183967)cmocpiB849
CmoCh07G007290Wild cucumber (PI 183967)cmocpiB873
CmoCh07G007290Wild cucumber (PI 183967)cmocpiB877
CmoCh07G007290Cucumber (Chinese Long) v2cmocuB839
CmoCh07G007290Melon (DHL92) v3.5.1cmomeB770
CmoCh07G007290Melon (DHL92) v3.5.1cmomeB781
CmoCh07G007290Watermelon (Charleston Gray)cmowcgB756
CmoCh07G007290Watermelon (Charleston Gray)cmowcgB759
CmoCh07G007290Watermelon (97103) v1cmowmB831
CmoCh07G007290Watermelon (97103) v1cmowmB833
CmoCh07G007290Cucurbita pepo (Zucchini)cmocpeB820
CmoCh07G007290Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G007290Cucurbita pepo (Zucchini)cmocpeB809
CmoCh07G007290Cucurbita pepo (Zucchini)cmocpeB822
CmoCh07G007290Cucurbita pepo (Zucchini)cmocpeB827
CmoCh07G007290Bottle gourd (USVL1VR-Ls)cmolsiB789
CmoCh07G007290Cucumber (Gy14) v2cgybcmoB543
CmoCh07G007290Cucumber (Gy14) v2cgybcmoB954
CmoCh07G007290Melon (DHL92) v3.6.1cmomedB874
CmoCh07G007290Melon (DHL92) v3.6.1cmomedB885
CmoCh07G007290Melon (DHL92) v3.6.1cmomedB896
CmoCh07G007290Silver-seed gourdcarcmoB0264
CmoCh07G007290Silver-seed gourdcarcmoB0554
CmoCh07G007290Silver-seed gourdcarcmoB1100