CmaCh07G007130 (gene) Cucurbita maxima (Rimu)

NameCmaCh07G007130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTRNA Delta(2)-isopentenylpyrophosphate transferase, putative
LocationCma_Chr07 : 3143324 .. 3144671 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAATCACATTAAAGCCTCTGGGCATCAAGTTAGGTTTGTGTCTCTTCTAAATGCTAAAAGTACTTTTTTTTTTTTTTTTTAGTTAAGTTTTTTCTCTCTTTTCAGCATCATTCAATTGATGAAATGAAATGGGTAGGCTAGGCATCATTCAGTCATTTAATTGAATAGATTGATTAAACCCTTTTCTCCTTTTTGCAAGGTTCATTCTTCTTCAAGATTTCGGGGCGTGGGGTTTTGGTGCTCTTATTTGATTTTACTTCAAATGAATCCAGACATTAAATTAAAATATAACTCGTGCACTGCTTGCAAGCTTATGTTATATATATATATATAGAATAATTTCCACTATCCCAATAAGGATACTTAAATAGTCCACAGACCCACTAACAAAGACGCATTAGGGTACCCTTTAAATATTATGATCATGAACATAATCAAAATTTACAATAAAATTGAGTGTGTAAACCAATGAACGGCAGAAAATTGAAGGAGAAGATAGTGGGAATGTTGTTGGAAGTGGAAGAGGTGCACGTGGAATAGTGGGGGAAGGACACTTTGTAATATAGCCCTACACCCTTTCGAAAGGTTAAAACATGTACCTTCGAAACTGAAGGAGAGGGTCCAAAAGCTTTGGAAAAATCTCTGAAACCCTAACCCTACCTACCTACTTCGTACTAGTCTACCCTAAACTTTAGAGCTCCAACACCTTATTATATTTTAAAACATTGCATTATTAATTCAAAAAGTGACCCAAAAAGGTTAGAGATATGGGCCACGGGGGAGGGGGGCGAATATCGACAACTAAACACACCTAAAGTGCTACATGTATAAACCATTCATATTACTATTTCTCATTTTTTTTTTTTTTTTAATAACCCATTACTTTATACAACAAATAACAAACCCATATACTCCAATTCCCAATTCACCATATATATAGAACGTTAGGTACAACGCTTTCTGCGTACACAAAAATCTTCCCTTCAACTTCCACACCAAGCTTCTCTCTCTCTTTTCTTTTTCTCTCTCGAGACATATAAACGATGAAGACAACTCAAAGGCTTTCTGGGGTTTGTGTTTTTATTCTTTTTTTGGTTTTATGTTTAAGCCATGAGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTGATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAAGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA

mRNA sequence

ATGTTCAATCACATTAAAGCCTCTGGGCATCAAGTTAGCCATGAGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTGATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAAGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA

Coding sequence (CDS)

ATGTTCAATCACATTAAAGCCTCTGGGCATCAAGTTAGCCATGAGGTTGTTTACGTAGAATGTCGGCATCTCAAGTCCTCAAGATGCAAAAAATGCACGAAATTGATCAATCCGCCGGCGGTTAATCTCGGTGGAAAGAAAGCGGCCCCCGGCGATGTGGGTTTGGCCGGAAATCGTCAAGAATTTAAGACGAGCAAAGCAGAACAACCTCAAGACTTCCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCATCATATCAACAACTGA

Protein sequence

MFNHIKASGHQVSHEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHINN
BLAST of CmaCh07G007130 vs. TrEMBL
Match: A0A0A0KGB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 12 VSHEVVYVECRHLKSSR-CKKCTKLI--NPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAE 71
          V +E VYVECRHLKSSR CKKC+K I  +PP          P  +  AGN Q+F T KAE
Sbjct: 5  VGYEGVYVECRHLKSSRSCKKCSKSIGTSPPP--------PPAHLKSAGNPQQFTTIKAE 64

Query: 72 QPQDFRPTSPGHSPGVGHHINN 91
           PQDFRPTSPGHSPGVGHHINN
Sbjct: 65 LPQDFRPTSPGHSPGVGHHINN 78

BLAST of CmaCh07G007130 vs. TrEMBL
Match: W9R6N3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 12 VSHEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQ 71
          V HEV+ VE RHLKS+R ++C+K         G ++ +      A +R E +TSKAE   
Sbjct: 2  VCHEVINVEGRHLKSTRFRRCSKS--------GDQQHST----YAYSRPEVQTSKAEHVD 61

Query: 72 DFRPTSPGHSPGVGHHINN 91
          DFRPT+PGHSPGVGH INN
Sbjct: 62 DFRPTAPGHSPGVGHSINN 68

BLAST of CmaCh07G007130 vs. TrEMBL
Match: A0A061DGB8_THECC (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao GN=TCM_000584 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-07
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 1

Query: 16 VVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 75
          V  VE RHL+S  CKKC++     A     K    G     G+ QE +TSKAE   DFRP
Sbjct: 24 VYNVEGRHLRSKSCKKCSR---QRADQNTLKMTKNGSHSSTGSGQE-QTSKAENIDDFRP 83

Query: 76 TSPGHSPGVGHHINN 91
          TSPGHSPGVGH I N
Sbjct: 84 TSPGHSPGVGHSIKN 94

BLAST of CmaCh07G007130 vs. TrEMBL
Match: A0A151SXM3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1

Query: 14 HEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDF 73
          H+V++V+ RHL+S  CK+C+K   P    +    A  GD    G +QE       +  DF
Sbjct: 20 HQVLFVQGRHLRSQLCKECSK---PQRNTIS--VALHGDGDHIGVQQEGSRRVEYEVDDF 79

Query: 74 RPTSPGHSPGVGHHINN 91
          RPT+PGHSPGVGH INN
Sbjct: 80 RPTTPGHSPGVGHSINN 91

BLAST of CmaCh07G007130 vs. TrEMBL
Match: A0A067KI08_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12366 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-06
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 1

Query: 15 EVVYVECRHLKSSRCKKCTKLINPPAVNLG----GKKAAPGDVGLAGNRQEFKTSKAEQP 74
          E+V VE RHLK+  CKK +   N     L     G K+    V L GN++  KTSK +  
Sbjct: 5  ELVCVEGRHLKTKLCKKGSSGNNHSKSTLNFSKDGYKSNSHQV-LIGNQE--KTSKMDYV 64

Query: 75 QDFRPTSPGHSPGVGHHINN 91
           +FRPT+PGHSPGVGH INN
Sbjct: 65 DEFRPTTPGHSPGVGHSINN 81

BLAST of CmaCh07G007130 vs. NCBI nr
Match: gi|700193309|gb|KGN48513.1| (hypothetical protein Csa_6G490770 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 1

Query: 12 VSHEVVYVECRHLKSSR-CKKCTKLI--NPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAE 71
          V +E VYVECRHLKSSR CKKC+K I  +PP          P  +  AGN Q+F T KAE
Sbjct: 5  VGYEGVYVECRHLKSSRSCKKCSKSIGTSPPP--------PPAHLKSAGNPQQFTTIKAE 64

Query: 72 QPQDFRPTSPGHSPGVGHHINN 91
           PQDFRPTSPGHSPGVGHHINN
Sbjct: 65 LPQDFRPTSPGHSPGVGHHINN 78

BLAST of CmaCh07G007130 vs. NCBI nr
Match: gi|703091524|ref|XP_010094382.1| (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 12 VSHEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQ 71
          V HEV+ VE RHLKS+R ++C+K         G ++ +      A +R E +TSKAE   
Sbjct: 2  VCHEVINVEGRHLKSTRFRRCSKS--------GDQQHST----YAYSRPEVQTSKAEHVD 61

Query: 72 DFRPTSPGHSPGVGHHINN 91
          DFRPT+PGHSPGVGH INN
Sbjct: 62 DFRPTAPGHSPGVGHSINN 68

BLAST of CmaCh07G007130 vs. NCBI nr
Match: gi|697095879|ref|XP_009613627.1| (PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis])

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 1

Query: 12 VSHEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQ 71
          +SHE+++VE RHLKS  CK C+K +          K +P     A       +SKAE   
Sbjct: 20 LSHEILHVEARHLKSKHCKHCSKTLKVK------NKGSPSSTQAAA-----VSSKAENID 79

Query: 72 DFRPTSPGHSPGVGHHINN 91
           F+P+ PGHSPGVGH I+N
Sbjct: 80 GFQPSGPGHSPGVGHSIHN 87

BLAST of CmaCh07G007130 vs. NCBI nr
Match: gi|590704617|ref|XP_007047208.1| (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-07
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 1

Query: 16 VVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDFRP 75
          V  VE RHL+S  CKKC++     A     K    G     G+ QE +TSKAE   DFRP
Sbjct: 24 VYNVEGRHLRSKSCKKCSR---QRADQNTLKMTKNGSHSSTGSGQE-QTSKAENIDDFRP 83

Query: 76 TSPGHSPGVGHHINN 91
          TSPGHSPGVGH I N
Sbjct: 84 TSPGHSPGVGHSIKN 94

BLAST of CmaCh07G007130 vs. NCBI nr
Match: gi|1012348355|gb|KYP59546.1| (hypothetical protein KK1_014982 [Cajanus cajan])

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1

Query: 14 HEVVYVECRHLKSSRCKKCTKLINPPAVNLGGKKAAPGDVGLAGNRQEFKTSKAEQPQDF 73
          H+V++V+ RHL+S  CK+C+K   P    +    A  GD    G +QE       +  DF
Sbjct: 20 HQVLFVQGRHLRSQLCKECSK---PQRNTIS--VALHGDGDHIGVQQEGSRRVEYEVDDF 79

Query: 74 RPTSPGHSPGVGHHINN 91
          RPT+PGHSPGVGH INN
Sbjct: 80 RPTTPGHSPGVGHSINN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB6_CUCSA1.6e-1764.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1[more]
W9R6N3_9ROSA2.0e-0950.63Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1[more]
A0A061DGB8_THECC3.3e-0752.00TRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ... [more]
A0A151SXM3_CAJCA4.3e-0745.45Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1[more]
A0A067KI08_JATCU2.8e-0648.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12366 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700193309|gb|KGN48513.1|2.2e-1764.63hypothetical protein Csa_6G490770 [Cucumis sativus][more]
gi|703091524|ref|XP_010094382.1|2.9e-0950.63hypothetical protein L484_008270 [Morus notabilis][more]
gi|697095879|ref|XP_009613627.1|2.8e-0743.04PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis][more]
gi|590704617|ref|XP_007047208.1|4.7e-0752.00TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao][more]
gi|1012348355|gb|KYP59546.1|6.1e-0745.45hypothetical protein KK1_014982 [Cajanus cajan][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G007130.1CmaCh07G007130.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G007130Cucumber (Chinese Long) v3cmacucB1007
CmaCh07G007130Cucumber (Chinese Long) v3cmacucB1039
CmaCh07G007130Watermelon (97103) v2cmawmbB875
CmaCh07G007130Watermelon (97103) v2cmawmbB886
CmaCh07G007130Wax gourdcmawgoB1050
CmaCh07G007130Cucurbita maxima (Rimu)cmacmaB071
CmaCh07G007130Cucurbita maxima (Rimu)cmacmaB171
CmaCh07G007130Cucurbita maxima (Rimu)cmacmaB462
CmaCh07G007130Cucurbita maxima (Rimu)cmacmaB523
CmaCh07G007130Cucurbita maxima (Rimu)cmacmaB551
CmaCh07G007130Cucumber (Gy14) v1cgycmaB0235
CmaCh07G007130Cucumber (Gy14) v1cgycmaB0630
CmaCh07G007130Cucumber (Gy14) v1cgycmaB1023
CmaCh07G007130Cucurbita moschata (Rifu)cmacmoB841
CmaCh07G007130Cucurbita moschata (Rifu)cmacmoB842
CmaCh07G007130Cucurbita moschata (Rifu)cmacmoB851
CmaCh07G007130Cucurbita moschata (Rifu)cmacmoB853
CmaCh07G007130Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G007130Wild cucumber (PI 183967)cmacpiB869
CmaCh07G007130Wild cucumber (PI 183967)cmacpiB884
CmaCh07G007130Wild cucumber (PI 183967)cmacpiB893
CmaCh07G007130Wild cucumber (PI 183967)cmacpiB898
CmaCh07G007130Cucumber (Chinese Long) v2cmacuB852
CmaCh07G007130Melon (DHL92) v3.5.1cmameB780
CmaCh07G007130Melon (DHL92) v3.5.1cmameB795
CmaCh07G007130Melon (DHL92) v3.5.1cmameB809
CmaCh07G007130Watermelon (Charleston Gray)cmawcgB755
CmaCh07G007130Watermelon (Charleston Gray)cmawcgB757
CmaCh07G007130Watermelon (97103) v1cmawmB841
CmaCh07G007130Watermelon (97103) v1cmawmB842
CmaCh07G007130Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G007130Cucurbita pepo (Zucchini)cmacpeB884
CmaCh07G007130Cucurbita pepo (Zucchini)cmacpeB888
CmaCh07G007130Bottle gourd (USVL1VR-Ls)cmalsiB784
CmaCh07G007130Bottle gourd (USVL1VR-Ls)cmalsiB803
CmaCh07G007130Cucumber (Gy14) v2cgybcmaB569
CmaCh07G007130Cucumber (Gy14) v2cgybcmaB972
CmaCh07G007130Melon (DHL92) v3.6.1cmamedB882
CmaCh07G007130Melon (DHL92) v3.6.1cmamedB896
CmaCh07G007130Melon (DHL92) v3.6.1cmamedB907
CmaCh07G007130Silver-seed gourdcarcmaB0257
CmaCh07G007130Silver-seed gourdcarcmaB0571
CmaCh07G007130Silver-seed gourdcarcmaB1073
CmaCh07G007130Silver-seed gourdcarcmaB1130