ClCG01G016720.1 (mRNA) Watermelon (Charleston Gray)

NameClCG01G016720.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 31205301 .. 31205537 (-)
Sequence length237
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

mRNA sequence

ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

Coding sequence (CDS)

ATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAGGCCACAAGATGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGGTTCATCAGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACAAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA

Protein sequence

MIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSPGVGHHINN
BLAST of ClCG01G016720.1 vs. TrEMBL
Match: A0A0A0KGB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1

Query: 5  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRVHQKSAGNGQQFMTNKAELPQD 64
          +V  + +E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T KAELPQD
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 65 FRPTSPGHSPGVGHHINN 79
          FRPTSPGHSPGVGHHINN
Sbjct: 61 FRPTSPGHSPGVGHHINN 78

BLAST of ClCG01G016720.1 vs. TrEMBL
Match: W9R6N3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 11 HESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSP 70
          HE + VE RHLK+TR ++CSK   +  + H   A +  +  T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 71 GVGHHINN 79
          GVGH INN
Sbjct: 64 GVGHSINN 68

BLAST of ClCG01G016720.1 vs. TrEMBL
Match: A0A0S3R503_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G344400 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 1  MIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQ------QFMTNK 60
          ++++L   L H+SV+VE RHL++  C++CSK     P+ H  S G+G+      Q  + +
Sbjct: 11 LVLLLFFILHHQSVFVEGRHLRSPLCEECSK-----PQNHTMS-GDGKSDDVVHQEGSRR 70

Query: 61 AELP-QDFRPTSPGHSPGVGHHINN 79
           E    DFRPT+PGHSPGVGH INN
Sbjct: 71 VEYEVDDFRPTTPGHSPGVGHSINN 89

BLAST of ClCG01G016720.1 vs. TrEMBL
Match: V7CCL6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G245600g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1

Query: 2   IIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELP-QD 61
           ++ L   LSH+S++V  RHL++  C++CSK  +     H  S     Q  + + E    D
Sbjct: 76  VLFLFFILSHQSLFVHGRHLRSPLCEECSKHQNNSMSGHGISDHEVHQEGSRRVEYEVDD 135

Query: 62  FRPTSPGHSPGVGHHINN 79
           FRPT+PGHSPGVGH INN
Sbjct: 136 FRPTTPGHSPGVGHSINN 153

BLAST of ClCG01G016720.1 vs. TrEMBL
Match: A0A151SXM3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1

Query: 3  IVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNG-------QQFMTNKA 62
          ++L L L H+ ++V+ RHL++  CK+CSK    P R     A +G       QQ  + + 
Sbjct: 12 VLLFLVLHHQVLFVQGRHLRSQLCKECSK----PQRNTISVALHGDGDHIGVQQEGSRRV 71

Query: 63 ELP-QDFRPTSPGHSPGVGHHINN 79
          E    DFRPT+PGHSPGVGH INN
Sbjct: 72 EYEVDDFRPTTPGHSPGVGHSINN 91

BLAST of ClCG01G016720.1 vs. NCBI nr
Match: gi|700193309|gb|KGN48513.1| (hypothetical protein Csa_6G490770 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-22
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1

Query: 5  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRVHQKSAGNGQQFMTNKAELPQD 64
          +V  + +E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T KAELPQD
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 65 FRPTSPGHSPGVGHHINN 79
          FRPTSPGHSPGVGHHINN
Sbjct: 61 FRPTSPGHSPGVGHHINN 78

BLAST of ClCG01G016720.1 vs. NCBI nr
Match: gi|590704617|ref|XP_007047208.1| (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1

Query: 1  MIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRVHQKSAGNGQQFMTNK 60
          +++VL+LC       VE RHL++  CKKCS+       +         S G+GQ+  T+K
Sbjct: 12 LLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSGQE-QTSK 71

Query: 61 AELPQDFRPTSPGHSPGVGHHINN 79
          AE   DFRPTSPGHSPGVGH I N
Sbjct: 72 AENIDDFRPTSPGHSPGVGHSIKN 94

BLAST of ClCG01G016720.1 vs. NCBI nr
Match: gi|703091524|ref|XP_010094382.1| (hypothetical protein L484_008270 [Morus notabilis])

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 11 HESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQFMTNKAELPQDFRPTSPGHSP 70
          HE + VE RHLK+TR ++CSK   +  + H   A +  +  T+KAE   DFRPT+PGHSP
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK---SGDQQHSTYAYSRPEVQTSKAEHVDDFRPTAPGHSP 63

Query: 71 GVGHHINN 79
          GVGH INN
Sbjct: 64 GVGHSINN 68

BLAST of ClCG01G016720.1 vs. NCBI nr
Match: gi|697095879|ref|XP_009613627.1| (PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 2  IIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRVHQKSAGNGQQ--FMTNKAELPQ 61
          I  L+L LSHE ++VE RHLK+  CK CSK +    +V  K + +  Q   +++KAE   
Sbjct: 13 IFFLLLILSHEILHVEARHLKSKHCKHCSKTL----KVKNKGSPSSTQAAAVSSKAENID 72

Query: 62 DFRPTSPGHSPGVGHHINN 79
           F+P+ PGHSPGVGH I+N
Sbjct: 73 GFQPSGPGHSPGVGHSIHN 87

BLAST of ClCG01G016720.1 vs. NCBI nr
Match: gi|223538386|gb|EEF39992.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1

Query: 4   VLVLCLSHESVYV-ECRHLKATRCKKCSKLISAPPRV----HQKSAG---NGQQFMTNKA 63
           +LVL L HE++YV E RHLK   CKKCS+   +   V    H  +     NG Q   +K 
Sbjct: 19  LLVLILCHEAIYVVEGRHLKPKLCKKCSRRSESSLDVSKDGHHNTTTHLLNGDQEKISKM 78

Query: 64  ELPQDFRPTSPGHSPGVGHHINN 79
           +   DFRPT+PGHSPGVGH I N
Sbjct: 79  DFVDDFRPTAPGHSPGVGHSIQN 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KGB6_CUCSA1.8e-2271.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490770 PE=4 SV=1[more]
W9R6N3_9ROSA3.6e-1052.94Uncharacterized protein OS=Morus notabilis GN=L484_008270 PE=4 SV=1[more]
A0A0S3R503_PHAAN6.7e-0944.71Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G344400 PE=... [more]
V7CCL6_PHAVU2.6e-0843.59Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G245600g PE=4 SV=1[more]
A0A151SXM3_CAJCA1.7e-0744.05Uncharacterized protein OS=Cajanus cajan GN=KK1_014982 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700193309|gb|KGN48513.1|2.6e-2271.79hypothetical protein Csa_6G490770 [Cucumis sativus][more]
gi|590704617|ref|XP_007047208.1|3.9e-1046.43TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao][more]
gi|703091524|ref|XP_010094382.1|5.1e-1052.94hypothetical protein L484_008270 [Morus notabilis][more]
gi|697095879|ref|XP_009613627.1|1.5e-0946.84PREDICTED: uncharacterized protein LOC104106722 [Nicotiana tomentosiformis][more]
gi|223538386|gb|EEF39992.1|2.0e-0948.19conserved hypothetical protein [Ricinus communis][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG01G016720ClCG01G016720gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG01G016720.1ClCG01G016720.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG01G016720.1.cds1ClCG01G016720.1.cds1CDS