ClCG01G004990 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G004990
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 5289740 .. 5290039 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGTACATTTCCCATGAACTTTTTTTTTTTTTTTTCCTTCTTCTTTTTTTTTTTGCTAACCAATATCAATATGAAAAGTTTGTAAGTTCAAGCTTTTTCAGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

mRNA sequence

ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

Coding sequence (CDS)

ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

Protein sequence

MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVGRIVRRDLAHGGNYGPGIQ
Homology
[Close]
BLAST of ClCG01G004990 vs. TrEMBL
Match: A0A0A0KL54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-18
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVGR-IVRRDLAHGG 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ NG+MK  +IKVIVVGR IVRRDLAHGG
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGG 63

Query: 61 NYGPGIQ 67
          NYGPG+Q
Sbjct: 64 NYGPGVQ 69

[Close]
BLAST of ClCG01G004990 vs. NCBI nr
Match: gi|700195181|gb|KGN50358.1| (hypothetical protein Csa_5G168950 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVGR-IVRRDLAHGG 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ NG+MK  +IKVIVVGR IVRRDLAHGG
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGG 63

Query: 61 NYGPGIQ 67
          NYGPG+Q
Sbjct: 64 NYGPGVQ 69

The following BLAST results are available for this feature:
BLAST of ClCG01G004990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL54_CUCSA2.3e-1880.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of ClCG01G004990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195181|gb|KGN50358.1|3.3e-1880.60hypothetical protein Csa_5G168950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G004990.1ClCG01G004990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G004990Cla97C01G005220Watermelon (97103) v2wcgwmbB089
ClCG01G004990CSPI05G07820Wild cucumber (PI 183967)cpiwcgB379
ClCG01G004990Lsi09G005260Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G004990Cp4.1LG05g07170Cucurbita pepo (Zucchini)cpewcgB640
ClCG01G004990CsGy5G005230Cucumber (Gy14) v2cgybwcgB332
ClCG01G004990MELO3C033989.2Melon (DHL92) v3.6.1medwcgB017
ClCG01G004990Carg08477Silver-seed gourdcarwcgB0688
ClCG01G004990CsaV3_5G005250Cucumber (Chinese Long) v3cucwcgB385
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G004990Melon (DHL92) v3.6.1medwcgB464
ClCG01G004990Silver-seed gourdcarwcgB0367
ClCG01G004990Silver-seed gourdcarwcgB1008
ClCG01G004990Cucumber (Chinese Long) v3cucwcgB297
ClCG01G004990Watermelon (97103) v2wcgwmbB117
ClCG01G004990Wax gourdwcgwgoB193
ClCG01G004990Wax gourdwcgwgoB212
ClCG01G004990Watermelon (Charleston Gray)wcgwcgB108
ClCG01G004990Cucumber (Gy14) v1cgywcgB115
ClCG01G004990Cucumber (Gy14) v1cgywcgB211
ClCG01G004990Cucumber (Gy14) v1cgywcgB447
ClCG01G004990Cucurbita maxima (Rimu)cmawcgB256
ClCG01G004990Cucurbita maxima (Rimu)cmawcgB519
ClCG01G004990Cucurbita maxima (Rimu)cmawcgB637
ClCG01G004990Cucurbita moschata (Rifu)cmowcgB244
ClCG01G004990Cucurbita moschata (Rifu)cmowcgB287
ClCG01G004990Cucurbita moschata (Rifu)cmowcgB517
ClCG01G004990Cucurbita moschata (Rifu)cmowcgB639
ClCG01G004990Wild cucumber (PI 183967)cpiwcgB298
ClCG01G004990Cucumber (Chinese Long) v2cuwcgB287
ClCG01G004990Cucumber (Chinese Long) v2cuwcgB364
ClCG01G004990Melon (DHL92) v3.5.1mewcgB019
ClCG01G004990Melon (DHL92) v3.5.1mewcgB470
ClCG01G004990Watermelon (97103) v1wcgwmB128
ClCG01G004990Watermelon (97103) v1wcgwmB154
ClCG01G004990Cucurbita pepo (Zucchini)cpewcgB168
ClCG01G004990Cucurbita pepo (Zucchini)cpewcgB372
ClCG01G004990Bottle gourd (USVL1VR-Ls)lsiwcgB328
ClCG01G004990Bottle gourd (USVL1VR-Ls)lsiwcgB393
ClCG01G004990Cucumber (Gy14) v2cgybwcgB266