CSPI05G07820 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G07820
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 6678263 .. 6678779 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAGCAAAGGAAAGAGGATCGCAAGAGATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGTACATTTTCTCAACATTTCTATTGTTATTTTTTCTTTGGCTAACCAAGATTCATGAAAAGTTTATAATTTTATGTTTTGATTAATTTTTTTCAGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGAGATATGATGTTATAATTAAACTAGTTTTCTTCGAGTTTCTTTCTTCTTAAATAACTTGAATGTAGTGCAAAGTATATTGTTAAAAGTTCGATAACATTTCGGTTTGAAACTTCTTTTTTTCAAGTACTAATGATTTTAGAGAAGAAAATAATAAGCATATATATGTATATATATTAGAAAGGA

mRNA sequence

ATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGA

Coding sequence (CDS)

ATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGA
Homology
[Close]
BLAST of CSPI05G07820 vs. TrEMBL
Match: A0A0A0KL54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60
          MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYGPGVQ 70
          GGNYGPGVQ
Sbjct: 61 GGNYGPGVQ 69

[Close]
BLAST of CSPI05G07820 vs. NCBI nr
Match: gi|700195181|gb|KGN50358.1| (hypothetical protein Csa_5G168950 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60
          MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYGPGVQ 70
          GGNYGPGVQ
Sbjct: 61 GGNYGPGVQ 69

The following BLAST results are available for this feature:
BLAST of CSPI05G07820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G07820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL54_CUCSA4.0e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of CSPI05G07820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G07820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195181|gb|KGN50358.1|5.8e-29100.00hypothetical protein Csa_5G168950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G07820.1CSPI05G07820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G07820Csa5G168950Cucumber (Chinese Long) v2cpicuB240
CSPI05G07820ClCG01G004990Watermelon (Charleston Gray)cpiwcgB379
CSPI05G07820CsaV3_5G005250Cucumber (Chinese Long) v3cpicucB285
CSPI05G07820CsGy5G005230Cucumber (Gy14) v2cgybcpiB226
CSPI05G07820Carg08477Silver-seed gourdcarcpiB0749
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G07820Cucurbita maxima (Rimu)cmacpiB296
CSPI05G07820Cucurbita maxima (Rimu)cmacpiB615
CSPI05G07820Cucurbita maxima (Rimu)cmacpiB754
CSPI05G07820Cucurbita moschata (Rifu)cmocpiB287
CSPI05G07820Cucurbita moschata (Rifu)cmocpiB341
CSPI05G07820Cucurbita moschata (Rifu)cmocpiB607
CSPI05G07820Melon (DHL92) v3.5.1cpimeB351
CSPI05G07820Melon (DHL92) v3.5.1cpimeB400
CSPI05G07820Melon (DHL92) v3.5.1cpimeB407
CSPI05G07820Watermelon (Charleston Gray)cpiwcgB424
CSPI05G07820Watermelon (97103) v1cpiwmB402
CSPI05G07820Watermelon (97103) v1cpiwmB409
CSPI05G07820Watermelon (97103) v1cpiwmB424
CSPI05G07820Cucurbita pepo (Zucchini)cpecpiB187
CSPI05G07820Cucurbita pepo (Zucchini)cpecpiB739
CSPI05G07820Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G07820Bottle gourd (USVL1VR-Ls)cpilsiB384
CSPI05G07820Bottle gourd (USVL1VR-Ls)cpilsiB389
CSPI05G07820Melon (DHL92) v3.6.1cpimedB341
CSPI05G07820Melon (DHL92) v3.6.1cpimedB405
CSPI05G07820Cucumber (Gy14) v2cgybcpiB184
CSPI05G07820Silver-seed gourdcarcpiB1071
CSPI05G07820Cucumber (Chinese Long) v3cpicucB280
CSPI05G07820Watermelon (97103) v2cpiwmbB349
CSPI05G07820Watermelon (97103) v2cpiwmbB414
CSPI05G07820Wax gourdcpiwgoB440
CSPI05G07820Wax gourdcpiwgoB488
CSPI05G07820Wild cucumber (PI 183967)cpicpiB156
CSPI05G07820Cucumber (Gy14) v1cgycpiB104
CSPI05G07820Cucumber (Gy14) v1cgycpiB181
CSPI05G07820Cucumber (Gy14) v1cgycpiB388