Cla97C01G005220 (gene) Watermelon (97103) v2

Overview
NameCla97C01G005220
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr01 : 4938648 .. 4938948 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGTACATTTCCCATGAACTTTTTTTTTTTTTTTTTCCTTCTTCTTTTTTTTTTTGCTAACCAATATCAATATGAAAAGTTTGTAAGTTCAAGCTTTTTCAGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

mRNA sequence

ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

Coding sequence (CDS)

ATGGCTTCCAATAAGAAGCACTTGACAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTAATTTCAACCTATGGAGCAGCAAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTAAAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAATTCAGTGA

Protein sequence

MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVGRIVRRDLAHGGNYGPGIQ
Homology
[Close]
BLAST of Cla97C01G005220 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_5G168950 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVG-RIVRRDLAHGG 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ NG+MK  +IKVIVVG RIVRRDLAHGG
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGG 63

Query: 61 NYGPGIQ 67
          NYGPG+Q
Sbjct: 64 NYGPGVQ 69

[Close]
BLAST of Cla97C01G005220 vs. TrEMBL
Match: tr|A0A0A0KL54|A0A0A0KL54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-18
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MASNKKHLTILAIVLYLMLFLISTYGAARILNPNGNMKALKIKVIVVG-RIVRRDLAHGG 60
          MAS KKHL ILA +LYLMLFL STYGAARIL+ NG+MK  +IKVIVVG RIVRRDLAHGG
Sbjct: 4  MASYKKHLIILATLLYLMLFL-STYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGG 63

Query: 61 NYGPGIQ 67
          NYGPG+Q
Sbjct: 64 NYGPGVQ 69

The following BLAST results are available for this feature:
BLAST of Cla97C01G005220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50358.11.4e-1780.60hypothetical protein Csa_5G168950 [Cucumis sativus][more]
BLAST of Cla97C01G005220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KL54|A0A0A0KL54_CUCSA9.5e-1880.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of Cla97C01G005220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G005220 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G005220.1Cla97C01G005220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G005220ClCG01G004990Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G005220Lsi09G005260Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G005220MELO3C033989.2Melon (DHL92) v3.6.1medwmbB007
Cla97C01G005220Carg08477Silver-seed gourdcarwmbB0741
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G005220Watermelon (97103) v2wmbwmbB033
Cla97C01G005220Silver-seed gourdcarwmbB0908
Cla97C01G005220Silver-seed gourdcarwmbB1093
Cla97C01G005220Cucumber (Gy14) v2cgybwmbB255
Cla97C01G005220Cucumber (Gy14) v2cgybwmbB319
Cla97C01G005220Cucumber (Gy14) v1cgywmbB107
Cla97C01G005220Cucumber (Gy14) v1cgywmbB208
Cla97C01G005220Cucurbita maxima (Rimu)cmawmbB285
Cla97C01G005220Cucurbita maxima (Rimu)cmawmbB601
Cla97C01G005220Cucurbita maxima (Rimu)cmawmbB707
Cla97C01G005220Cucurbita moschata (Rifu)cmowmbB267
Cla97C01G005220Cucurbita moschata (Rifu)cmowmbB312
Cla97C01G005220Cucurbita moschata (Rifu)cmowmbB576
Cla97C01G005220Cucurbita moschata (Rifu)cmowmbB678
Cla97C01G005220Wild cucumber (PI 183967)cpiwmbB274
Cla97C01G005220Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G005220Cucumber (Chinese Long) v3cucwmbB269
Cla97C01G005220Cucumber (Chinese Long) v3cucwmbB351
Cla97C01G005220Cucumber (Chinese Long) v2cuwmbB267
Cla97C01G005220Cucumber (Chinese Long) v2cuwmbB336
Cla97C01G005220Bottle gourd (USVL1VR-Ls)lsiwmbB390
Cla97C01G005220Melon (DHL92) v3.6.1medwmbB453
Cla97C01G005220Melon (DHL92) v3.5.1mewmbB009
Cla97C01G005220Melon (DHL92) v3.5.1mewmbB459
Cla97C01G005220Watermelon (Charleston Gray)wcgwmbB285
Cla97C01G005220Watermelon (97103) v1wmwmbB144
Cla97C01G005220Watermelon (97103) v1wmwmbB245
Cla97C01G005220Wax gourdwgowmbB059
Cla97C01G005220Wax gourdwgowmbB172