Lsi09G005260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G005260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 5545595 .. 5545921 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGTAACTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTGCTAACTAAGATCAATATGAAAAGTTTATAAGTTCAAGCTTTTTTTTTTTTTTCAGGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

mRNA sequence

ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

Coding sequence (CDS)

ATGGATGAAATGGCTTCCAATAAGAAGCACTTCTTGATAATTTTAGCAATTGTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATGATCTTGAATCCAAATAATGGTACATTTTCCAGAAATATGAAGGCCCTAGAGATCAAGGTTATTGTAGTAGGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGTCCGGGAAAT

Protein sequence

MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVGRIVRRDLAHGGNYGPGN
Homology
[Close]
BLAST of Lsi09G005260 vs. TrEMBL
Match: A0A0A0KL54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.8e-15
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 1  MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVG-RI 60
          M++MAS KKH LIILA +LYLMLFLSTYGAAR++        + +MK  EIKVIVVG RI
Sbjct: 1  MNKMASYKKH-LIILATLLYLMLFLSTYGAARIL------DLNGSMKVREIKVIVVGRRI 60

Query: 61 VRRDLAHGGNYGPG 74
          VRRDLAHGGNYGPG
Sbjct: 61 VRRDLAHGGNYGPG 67

[Close]
BLAST of Lsi09G005260 vs. NCBI nr
Match: gi|700195181|gb|KGN50358.1| (hypothetical protein Csa_5G168950 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 1  MDEMASNKKHFLIILAIVLYLMLFLSTYGAARMILNPNNGTFSRNMKALEIKVIVVG-RI 60
          M++MAS KKH LIILA +LYLMLFLSTYGAAR++        + +MK  EIKVIVVG RI
Sbjct: 1  MNKMASYKKH-LIILATLLYLMLFLSTYGAARIL------DLNGSMKVREIKVIVVGRRI 60

Query: 61 VRRDLAHGGNYGPG 74
          VRRDLAHGGNYGPG
Sbjct: 61 VRRDLAHGGNYGPG 67

The following BLAST results are available for this feature:
BLAST of Lsi09G005260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G005260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL54_CUCSA7.8e-1570.27Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of Lsi09G005260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G005260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195181|gb|KGN50358.1|1.1e-1470.27hypothetical protein Csa_5G168950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G005260.1Lsi09G005260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G005260ClCG01G004990Watermelon (Charleston Gray)lsiwcgB008
Lsi09G005260MELO3C033989.2Melon (DHL92) v3.6.1lsimedB013
Lsi09G005260Cla97C01G005220Watermelon (97103) v2lsiwmbB007
Lsi09G005260CsGy5G005230Cucumber (Gy14) v2cgyblsiB294
Lsi09G005260Carg08477Silver-seed gourdcarlsiB648
Lsi09G005260CsaV3_5G005250Cucumber (Chinese Long) v3cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G005260Bottle gourd (USVL1VR-Ls)lsilsiB018
Lsi09G005260Cucumber (Gy14) v1cgylsiB108
Lsi09G005260Cucumber (Gy14) v1cgylsiB201
Lsi09G005260Cucurbita maxima (Rimu)cmalsiB261
Lsi09G005260Cucurbita maxima (Rimu)cmalsiB531
Lsi09G005260Cucurbita maxima (Rimu)cmalsiB625
Lsi09G005260Cucurbita moschata (Rifu)cmolsiB248
Lsi09G005260Cucurbita moschata (Rifu)cmolsiB289
Lsi09G005260Cucurbita moschata (Rifu)cmolsiB517
Lsi09G005260Cucurbita moschata (Rifu)cmolsiB614
Lsi09G005260Cucurbita pepo (Zucchini)cpelsiB133
Lsi09G005260Cucurbita pepo (Zucchini)cpelsiB314
Lsi09G005260Cucurbita pepo (Zucchini)cpelsiB583
Lsi09G005260Wild cucumber (PI 183967)cpilsiB243
Lsi09G005260Wild cucumber (PI 183967)cpilsiB322
Lsi09G005260Cucumber (Chinese Long) v2culsiB322
Lsi09G005260Melon (DHL92) v3.5.1lsimeB013
Lsi09G005260Melon (DHL92) v3.5.1lsimeB039
Lsi09G005260Watermelon (97103) v1lsiwmB016
Lsi09G005260Watermelon (97103) v1lsiwmB031
Lsi09G005260Cucumber (Gy14) v2cgyblsiB230
Lsi09G005260Melon (DHL92) v3.6.1lsimedB043
Lsi09G005260Silver-seed gourdcarlsiB339
Lsi09G005260Silver-seed gourdcarlsiB943
Lsi09G005260Cucumber (Chinese Long) v3cuclsiB266
Lsi09G005260Watermelon (97103) v2lsiwmbB028
Lsi09G005260Wax gourdlsiwgoB010