ClCG01G001990 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G001990
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Avr9/Cf-9 rapidly elicited protein 194
Location	CG_Chr01 : 1952906 .. 1953373 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGA

mRNA sequence

ATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGA

Coding sequence (CDS)

ATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGA

Protein sequence

MASPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEPNSVSAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA

Homology

[Close]

BLAST of ClCG01G001990 vs. TrEMBL
Match: A0A0A0KMF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G150470 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.3e-64
Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 1


Query: 1   MASPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLL-- 60
           MA+P F+KSKS+QSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP R C L  
Sbjct: 1   MATPTFNKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPGRLCTLLP 60

Query: 61  -PPPPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSP-TFEANPERV--DAGFYVLYEDEP 120
            PPPPP PPSK+ SKISRSLHKFLRSVF HK NS P TFEANPERV  D GFYVLYEDE 
Sbjct: 61  PPPPPPPPPSKRSSKISRSLHKFLRSVFKHKTNSIPGTFEANPERVDDDHGFYVLYEDEA 120

Query: 121 NSVSAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
           NS+SAVPEVGF G SPEIGSLVRRT SERFT ATSM ISCA
Sbjct: 121 NSLSAVPEVGFPGFSPEIGSLVRRTTSERFTAATSMSISCA 161

[Close]

BLAST of ClCG01G001990 vs. TrEMBL
Match: B9GL78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10440g PE=4 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 7.5e-36
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 1


Query: 10  KSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPPPLPPSKK 69
           +++  A+VWDCGSSLYDSFEL S +RQLDSAI SRTLSMPH P R+ L  PP   PP KK
Sbjct: 33  QANNKALVWDCGSSLYDSFELKSFERQLDSAINSRTLSMPHFPDRQVLTTPP---PPPKK 92

Query: 70  PSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEP--NSVSAVPEVGFAG 129
           PSKISRSL+KFL+S+F  K NSS  F    ER+   +YV+Y+      ++  VPE+ F G
Sbjct: 93  PSKISRSLNKFLKSMFKSKQNSSTMFRVQ-ERLQDEYYVIYDKSGALTTIPEVPEIDFGG 152

Query: 130 ISPEIGSLVRRTASERFTGATSMGIS 154
            SPEI SLVR+T S+RFT A S+GIS
Sbjct: 153 FSPEINSLVRKTVSDRFT-AASIGIS 173

[Close]

BLAST of ClCG01G001990 vs. TrEMBL
Match: A0A068UUB6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035529001 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-35
Identity = 97/177 (54.80%), Postives = 117/177 (66.10%), Query Frame = 1


Query: 2   ASPKFSKSKSSQSA----------VVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHL 61
           A P  +++K S+SA          ++WDCGSSLYDSFEL S +RQLDSAI SRTLSMPHL
Sbjct: 50  ARPLENQAKISKSAEQPADAAADPLLWDCGSSLYDSFELKSFERQLDSAIHSRTLSMPHL 109

Query: 62  PTRRCL-------LPPPPPLPPSKKPSKISRSLHKFLRSVFGHKP---NSSPTFEANPER 121
             RR +        P  PP P SKK SKISRS HKFLRSVF  K    N +P F AN ++
Sbjct: 110 SDRRVIDGGNHHQPPSQPPQPMSKKSSKISRSFHKFLRSVFKPKAQNGNKNPFFPANEQQ 169

Query: 122 VDA-GFYVLYE-DEPNSVSAVPEVG-FAGISPEIGSLVRRTASERFTGATSMGISCA 156
               GFYV+Y+ D+  ++S +PEV  F G+SPE  SLVRRTAS+RF   +SMGISCA
Sbjct: 170 ATRDGFYVVYDIDKSGALSTIPEVSEFDGLSPEYKSLVRRTASDRF-AVSSMGISCA 225

[Close]

BLAST of ClCG01G001990 vs. TrEMBL
Match: K4CPK5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 88/160 (55.00%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 3   SPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPP-- 62
           SP+   S ++   ++WDCGSSLYDSFEL S +RQLDSAI+SR+LSMPHLP RR L+PP  
Sbjct: 9   SPQKMASAAANKPLIWDCGSSLYDSFELKSFERQLDSAISSRSLSMPHLPDRRLLIPPST 68

Query: 63  ----PPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEPNS 122
                   P SKK S+ISRS  K L+SVF  K ++SP F+        GFYV+Y D+  +
Sbjct: 69  TDPQQTTQPISKKTSRISRSFQKLLKSVFRAKQSNSPLFQGQNR---DGFYVVY-DKSGA 128

Query: 123 VSAVPE-VGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
           ++ +PE   + G+SPEI SLVRRT SERFT ATS+GISCA
Sbjct: 129 LTTIPEGPEYDGLSPEIKSLVRRTGSERFT-ATSIGISCA 163

[Close]

BLAST of ClCG01G001990 vs. TrEMBL
Match: M1AWR0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012296 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.4e-34
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 3   SPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPP 62
           SP+   + ++    +WDCGSSLYDSFEL S +RQLDSAI+SR+LSMPHLP RR L+PP  
Sbjct: 9   SPQKMAAGAANKPPIWDCGSSLYDSFELKSFERQLDSAISSRSLSMPHLPDRRVLIPPST 68

Query: 63  PLPP------SKKPSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEPNS 122
             PP      SKK ++ISRS  K L+S+F  K ++SP F+        GFYV+Y D+  +
Sbjct: 69  TDPPQTTQPISKKTNRISRSFQKLLKSIFRAKQSNSPLFQGQNR---DGFYVVY-DKSGA 128

Query: 123 VSAVPE-VGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
           ++ +PE   + G+SPEI SLVRRT SERFT ATS+GISCA
Sbjct: 129 LTTIPEGPEYDGLSPEIKSLVRRTGSERFT-ATSIGISCA 163

[Close]

BLAST of ClCG01G001990 vs. TAIR10
Match: AT5G41810.1 (AT5G41810.1 unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29
Identity = 80/171 (46.78%), Postives = 100/171 (58.48%), Query Frame = 1


Query: 14  SAVVWDCGSSLYDSFELNSLKRQLDSAI---ASRTLSMPHLPTRRC------------LL 73
           S+ VWDCGS+LYDSFELNS KRQLDSAI   ++RT+SM HLP RR              L
Sbjct: 119 SSHVWDCGSTLYDSFELNSFKRQLDSAISASSARTMSMSHLPDRRIPSLSSLSPEYSPPL 178

Query: 74  PPPPPLPPS------KKPSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAG------- 133
           PPPP    S      K  +KISRSL +FL+S+F  K + S T  ++P     G       
Sbjct: 179 PPPPTTSSSSSSGGKKHSNKISRSLQRFLKSMFKPKQHQSLTTPSSPVYKAVGHGGGDKD 238

Query: 134 -FYVLYEDEPNSVSAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
            +YV+Y D+  S++ +PE     +SPEI SLVR+T SERF  +  +GISCA
Sbjct: 239 RYYVVY-DKSGSLTTIPESTEKEVSPEINSLVRKTVSERFPASRVVGISCA 288

[Close]

BLAST of ClCG01G001990 vs. TAIR10
Match: AT1G64340.1 (AT1G64340.1 unknown protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 1


Query: 3   SPKFSKSKSS-----QSAVVWDCGSSLYDSFELNSLKRQLDSAIAS--RTLSMPHLPTRR 62
           +PK +  +S+     ++  VWDC S+LYDSFELNS  RQL+SAI+S  R++SMPHL +  
Sbjct: 103 NPKLNTEESTNLDKMKNRKVWDCESTLYDSFELNSFNRQLNSAISSSARSMSMPHLSS-- 162

Query: 63  CLLPPPPPLPPSKK-------PSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYV 122
              PPPP    S           KISRSL K ++S+F  K  S+  F+     VD   Y 
Sbjct: 163 ---PPPPSETTSSSTKKQQSPTKKISRSLGKLIKSMFKQK-QSNALFKTGHSGVDMDKYY 222

Query: 123 LYEDEPNSVSAVPEVGFAG--ISPEIGSLVRRTASER 144
           +  D+  S++ +PE G +   +  EI SLVR+T SER
Sbjct: 223 VVFDKTGSLTTIPESGESTEMVGSEINSLVRKTTSER 253

[Close]

BLAST of ClCG01G001990 vs. NCBI nr
Match: gi|659074026|ref|XP_008437381.1| (PREDICTED: uncharacterized protein LOC103482814 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 4.1e-67
Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 1


Query: 1   MASPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLL-- 60
           MA+P F+KSKS+QSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP RRCLL  
Sbjct: 1   MATPTFNKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPGRRCLLPP 60

Query: 61  PPPPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSP-TFEANPERVDAGFYVLYEDEPNSV 120
           PPPPP PPSK+ SKISRSLHKFLRSVF HK NS P +FEANPERVD GFYVLYEDE NS+
Sbjct: 61  PPPPPPPPSKRSSKISRSLHKFLRSVFRHKTNSIPGSFEANPERVDEGFYVLYEDESNSL 120

Query: 121 SAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
           SAVPEVGF G SPEIGSLVRRT SERFT ATSM ISCA
Sbjct: 121 SAVPEVGFPGFSPEIGSLVRRTTSERFTAATSMSISCA 158

[Close]

BLAST of ClCG01G001990 vs. NCBI nr
Match: gi|778699401|ref|XP_011654703.1| (PREDICTED: uncharacterized protein LOC105435436 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-64
Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 1


Query: 1   MASPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLL-- 60
           MA+P F+KSKS+QSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLP R C L  
Sbjct: 1   MATPTFNKSKSTQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPGRLCTLLP 60

Query: 61  -PPPPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSP-TFEANPERV--DAGFYVLYEDEP 120
            PPPPP PPSK+ SKISRSLHKFLRSVF HK NS P TFEANPERV  D GFYVLYEDE 
Sbjct: 61  PPPPPPPPPSKRSSKISRSLHKFLRSVFKHKTNSIPGTFEANPERVDDDHGFYVLYEDEA 120

Query: 121 NSVSAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA 156
           NS+SAVPEVGF G SPEIGSLVRRT SERFT ATSM ISCA
Sbjct: 121 NSLSAVPEVGFPGFSPEIGSLVRRTTSERFTAATSMSISCA 161

[Close]

BLAST of ClCG01G001990 vs. NCBI nr
Match: gi|764581239|ref|XP_011463971.1| (PREDICTED: uncharacterized protein LOC105351441 [Fragaria vesca subsp. vesca])

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-37
Identity = 90/152 (59.21%), Postives = 108/152 (71.05%), Query Frame = 1


Query: 9   SKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPPPLPPSK 68
           S++  S  VWDCGSSLYDSFELNS KR+LDSAI+ RT+SMPHL  RR  L P  P   +K
Sbjct: 111 SEAKSSRRVWDCGSSLYDSFELNSFKRELDSAISCRTMSMPHLSDRRAPL-PQQPTTVAK 170

Query: 69  KPSKISRSLHKFLRSVFGHKPNSSPTF--EANPERVDAGFYVLYEDEPNSVSAVPEV--- 128
           KPSK+SRSL+KFLRSVF  K  S P F  +    +   GFYV+Y D+  +++ +PEV   
Sbjct: 171 KPSKLSRSLNKFLRSVFKPKTGSGPVFRVQEKSNKTKDGFYVVY-DKSGALTTIPEVVPH 230

Query: 129 GFAGISPEIGSLVRRTASERFTGATSMGISCA 156
            F+G SPEIGSLVRRT SERFT   S+GISCA
Sbjct: 231 EFSGFSPEIGSLVRRTGSERFTSTASIGISCA 260

[Close]

BLAST of ClCG01G001990 vs. NCBI nr
Match: gi|566148234|ref|XP_002299484.2| (hypothetical protein POPTR_0001s10440g [Populus trichocarpa])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 1


Query: 10  KSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPPPLPPSKK 69
           +++  A+VWDCGSSLYDSFEL S +RQLDSAI SRTLSMPH P R+ L  PP   PP KK
Sbjct: 33  QANNKALVWDCGSSLYDSFELKSFERQLDSAINSRTLSMPHFPDRQVLTTPP---PPPKK 92

Query: 70  PSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEP--NSVSAVPEVGFAG 129
           PSKISRSL+KFL+S+F  K NSS  F    ER+   +YV+Y+      ++  VPE+ F G
Sbjct: 93  PSKISRSLNKFLKSMFKSKQNSSTMFRVQ-ERLQDEYYVIYDKSGALTTIPEVPEIDFGG 152

Query: 130 ISPEIGSLVRRTASERFTGATSMGIS 154
            SPEI SLVR+T S+RFT A S+GIS
Sbjct: 153 FSPEINSLVRKTVSDRFT-AASIGIS 173

[Close]

BLAST of ClCG01G001990 vs. NCBI nr
Match: gi|661884218|emb|CDP12135.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 155.6 bits (392), Expect = 7.0e-35
Identity = 97/177 (54.80%), Postives = 117/177 (66.10%), Query Frame = 1


Query: 2   ASPKFSKSKSSQSA----------VVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHL 61
           A P  +++K S+SA          ++WDCGSSLYDSFEL S +RQLDSAI SRTLSMPHL
Sbjct: 50  ARPLENQAKISKSAEQPADAAADPLLWDCGSSLYDSFELKSFERQLDSAIHSRTLSMPHL 109

Query: 62  PTRRCL-------LPPPPPLPPSKKPSKISRSLHKFLRSVFGHKP---NSSPTFEANPER 121
             RR +        P  PP P SKK SKISRS HKFLRSVF  K    N +P F AN ++
Sbjct: 110 SDRRVIDGGNHHQPPSQPPQPMSKKSSKISRSFHKFLRSVFKPKAQNGNKNPFFPANEQQ 169

Query: 122 VDA-GFYVLYE-DEPNSVSAVPEVG-FAGISPEIGSLVRRTASERFTGATSMGISCA 156
               GFYV+Y+ D+  ++S +PEV  F G+SPE  SLVRRTAS+RF   +SMGISCA
Sbjct: 170 ATRDGFYVVYDIDKSGALSTIPEVSEFDGLSPEYKSLVRRTASDRF-AVSSMGISCA 225

The following BLAST results are available for this feature:

BLAST of ClCG01G001990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMF8_CUCSA	1.3e-64	83.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G150470 PE=4 SV=1	[more]
B9GL78_POPTR	7.5e-36	58.90	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10440g PE=4 SV=2	[more]
A0A068UUB6_COFCA	4.9e-35	54.80	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035529001 PE=4 SV=1	[more]
K4CPK5_SOLLC	2.4e-34	55.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1AWR0_SOLTU	5.4e-34	53.75	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012296 PE=4 SV=1	[more]

BLAST of ClCG01G001990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41810.1	1.6e-29	46.78	unknown protein	[more]
AT1G64340.1	1.4e-20	41.40	unknown protein	[more]

BLAST of ClCG01G001990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074026\|ref\|XP_008437381.1\|	4.1e-67	85.44	PREDICTED: uncharacterized protein LOC103482814 [Cucumis melo]	[more]
gi\|778699401\|ref\|XP_011654703.1\|	1.9e-64	83.23	PREDICTED: uncharacterized protein LOC105435436 [Cucumis sativus]	[more]
gi\|764581239\|ref\|XP_011463971.1\|	2.6e-37	59.21	PREDICTED: uncharacterized protein LOC105351441 [Fragaria vesca subsp. vesca]	[more]
gi\|566148234\|ref\|XP_002299484.2\|	1.1e-35	58.90	hypothetical protein POPTR_0001s10440g [Populus trichocarpa]	[more]
gi\|661884218\|emb\|CDP12135.1\|	7.0e-35	54.80	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G001990.1	ClCG01G001990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 7..154 score: 1.2
None	No IPR available	PANTHER	PTHR33978:SF4	SUBFAMILY NOT NAMED	coord: 7..154 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G001990	Csa5G150470	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G001990	MELO3C005742	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G001990	Cla011381	Watermelon (97103) v1	wcgwmB142
ClCG01G001990	Cla97C01G002050	Watermelon (97103) v2	wcgwmbB089
ClCG01G001990	Cla97C07G141870	Watermelon (97103) v2	wcgwmbB119
ClCG01G001990	Bhi01G002285	Wax gourd	wcgwgoB211
ClCG01G001990	CSPI04G06260	Wild cucumber (PI 183967)	cpiwcgB299
ClCG01G001990	CSPI05G04730	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G001990	Cucsa.107290	Cucumber (Gy14) v1	cgywcgB147
ClCG01G001990	Cucsa.303790	Cucumber (Gy14) v1	cgywcgB520
ClCG01G001990	CmaCh04G007010	Cucurbita maxima (Rimu)	cmawcgB635
ClCG01G001990	CmaCh15G012730	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G001990	CmoCh04G007440	Cucurbita moschata (Rifu)	cmowcgB637
ClCG01G001990	CmoCh15G013420	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G001990	Lsi09G001840	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G001990	Lsi07G007080	Bottle gourd (USVL1VR-Ls)	lsiwcgB397
ClCG01G001990	Cp4.1LG13g01140	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G001990	CsGy4G006180	Cucumber (Gy14) v2	cgybwcgB267
ClCG01G001990	CsGy5G002010	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G001990	MELO3C016304.2	Melon (DHL92) v3.6.1	medwcgB461
ClCG01G001990	MELO3C005742.2	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G001990	Carg21271	Silver-seed gourd	carwcgB0352
ClCG01G001990	Carg13059	Silver-seed gourd	carwcgB0044
ClCG01G001990	Carg22241	Silver-seed gourd	carwcgB0575
ClCG01G001990	CsaV3_4G006460	Cucumber (Chinese Long) v3	cucwcgB299
ClCG01G001990	CsaV3_5G002120	Cucumber (Chinese Long) v3	cucwcgB385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G001990	Silver-seed gourd	carwcgB0898
ClCG01G001990	Wax gourd	wcgwgoB192
ClCG01G001990	Watermelon (Charleston Gray)	wcgwcgB084
ClCG01G001990	Watermelon (Charleston Gray)	wcgwcgB105
ClCG01G001990	Watermelon (Charleston Gray)	wcgwcgB111
ClCG01G001990	Cucurbita maxima (Rimu)	cmawcgB290
ClCG01G001990	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G001990	Cucurbita moschata (Rifu)	cmowcgB284
ClCG01G001990	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G001990	Cucumber (Chinese Long) v2	cuwcgB289
ClCG01G001990	Cucumber (Chinese Long) v2	cuwcgB434
ClCG01G001990	Melon (DHL92) v3.5.1	mewcgB085
ClCG01G001990	Melon (DHL92) v3.5.1	mewcgB467
ClCG01G001990	Watermelon (97103) v1	wcgwmB127
ClCG01G001990	Watermelon (97103) v1	wcgwmB152