Carg22241 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22241
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Avr9/Cf-9 rapidly elicited protein
Location	Cucurbita_argyrosperma_scaffold_174 : 262847 .. 263137 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATGTCCAAGCCTTCTTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGCTCGCTTTTTCCATCCAAACCTAACTCAAATAGCTCCATTTTCCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCCGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCTGAGAGGTTCATGCCCAACTCCCTCCGCATCTCATGTGCTTTGAATATTTGA

mRNA sequence

ATGCCCATGTCCAAGCCTTCTTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGCTCGCTTTTTCCATCCAAACCTAACTCAAATAGCTCCATTTTCCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCCGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCTGAGAGGTTCATGCCCAACTCCCTCCGCATCTCATGTGCTTTGAATATTTGA

Coding sequence (CDS)

ATGCCCATGTCCAAGCCTTCTTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGCTCGCTTTTTCCATCCAAACCTAACTCAAATAGCTCCATTTTCCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCCGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCTGAGAGGTTCATGCCCAACTCCCTCCGCATCTCATGTGCTTTGAATATTTGA

Protein sequence

MPMSKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADFGAGLSPEISSLVKKTASERFMPNSLRISCALNI

Homology

[Close]

BLAST of Carg22241 vs. NCBI nr
Match: XP_008451959.1 (PREDICTED: uncharacterized protein LOC103493107 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 4   SKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADF 63
           SK SSK SRS SKILRSLF  KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEADF
Sbjct: 77  SKASSKFSRSFSKILRSLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEADF 136

Query: 64  GAGLSPEISSLVKKTASERFMPNSLRISCAL 95
           GAGLSPEISSLVKKTASERF PNS+ ISC L
Sbjct: 137 GAGLSPEISSLVKKTASERFTPNSIGISCVL 167

[Close]

BLAST of Carg22241 vs. NCBI nr
Match: XP_022942039.1 (uncharacterized protein LOC111447227 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-30
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   MPMSKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPE 60
           +PMSK SSKLSRSL K+LRSLF  K NS +SIF  RDQPKDGFYVFYEVGSLSTIPEVPE
Sbjct: 67  VPMSKASSKLSRSLYKLLRSLFRPKSNSKTSIFRARDQPKDGFYVFYEVGSLSTIPEVPE 126

Query: 61  ADFGAGLSPEISSLVKKTASERFMPNSLRISCALNI 97
           ADFG GLSPEI SLV+KTASERF  NSL IS  LNI
Sbjct: 127 ADFGTGLSPEIGSLVRKTASERFTANSLGIS--LNI 160

[Close]

BLAST of Carg22241 vs. NCBI nr
Match: XP_022989197.1 (uncharacterized protein LOC111486340 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-30
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   MPMSKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPE 60
           +PMSK SSKLSRSL K+LRSLF  K NS +SIF  RDQPKDGFYVFYEVGSLSTIPEVPE
Sbjct: 65  VPMSKASSKLSRSLYKLLRSLFRPKSNSKTSIFRARDQPKDGFYVFYEVGSLSTIPEVPE 124

Query: 61  ADFGAGLSPEISSLVKKTASERFMPNSLRISCALNI 97
           ADFG GLSPEI SLV+KTASERF  NSL IS  LNI
Sbjct: 125 ADFGTGLSPEIGSLVRKTASERFTANSLGIS--LNI 158

[Close]

BLAST of Carg22241 vs. NCBI nr
Match: XP_023544229.1 (uncharacterized protein LOC111803865 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-30
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   MPMSKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPE 60
           +PMSK SSKLSRSL K+LRSLF  K NS +SIF  RDQPKDGFYVFYEVGSLSTIPEVPE
Sbjct: 69  VPMSKASSKLSRSLYKLLRSLFRPKSNSRTSIFRARDQPKDGFYVFYEVGSLSTIPEVPE 128

Query: 61  ADFGAGLSPEISSLVKKTASERFMPNSLRISCALNI 97
           ADFG GLSPEI SLV+KTASERF  NSL IS  LNI
Sbjct: 129 ADFGTGLSPEIGSLVRKTASERFTANSLGIS--LNI 162

[Close]

BLAST of Carg22241 vs. NCBI nr
Match: XP_011654341.1 (PREDICTED: uncharacterized protein LOC105435347 [Cucumis sativus] >KGN53393.1 hypothetical protein Csa_4G051450 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 20  SLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADFGAGLSPEISSLVKKTA 79
           SLF  KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEAD GAGLSPEISSLVKKTA
Sbjct: 99  SLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEADLGAGLSPEISSLVKKTA 158

Query: 80  SERFMPNSLRISCAL 95
           S RF PNS+ ISC L
Sbjct: 159 SGRFTPNSIGISCVL 173

[Close]

BLAST of Carg22241 vs. TAIR10
Match: AT5G41810.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-09
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 7   SSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQP-----------KDGFYVFYE-VGSLST 66
           S+K+SRSL + L+S+F  KP  + S+  T   P           KD +YV Y+  GSL+T
Sbjct: 196 SNKISRSLQRFLKSMF--KPKQHQSL-TTPSSPVYKAVGHGGGDKDRYYVVYDKSGSLTT 255

Query: 67  IPEVPEADFGAGLSPEISSLVKKTASERFMPNS-LRISCA 94
           IPE  E +    +SPEI+SLV+KT SERF  +  + ISCA
Sbjct: 256 IPESTEKE----VSPEINSLVRKTVSERFPASRVVGISCA 288

[Close]

BLAST of Carg22241 vs. TAIR10
Match: AT1G64340.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 9   KLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKD---GFYVFYEVGSLSTIPEVPEADFGA 68
           K+SRSL K+++S+F  K   ++++F T     D    + VF + GSL+TIPE  E+    
Sbjct: 181 KISRSLGKLIKSMF--KQKQSNALFKTGHSGVDMDKYYVVFDKTGSLTTIPESGESTEMV 240

Query: 69  GLSPEISSLVKKTASERFMPNSLRIS 92
           G   EI+SLV+KT SER   + L +S
Sbjct: 241 G--SEINSLVRKTTSERIPQSRLVVS 262

[Close]

BLAST of Carg22241 vs. TrEMBL
Match: tr|A0A1S3BTI3|A0A1S3BTI3_CUCME (uncharacterized protein LOC103493107 OS=Cucumis melo OX=3656 GN=LOC103493107 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 4   SKPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADF 63
           SK SSK SRS SKILRSLF  KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEADF
Sbjct: 77  SKASSKFSRSFSKILRSLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEADF 136

Query: 64  GAGLSPEISSLVKKTASERFMPNSLRISCAL 95
           GAGLSPEISSLVKKTASERF PNS+ ISC L
Sbjct: 137 GAGLSPEISSLVKKTASERFTPNSIGISCVL 167

[Close]

BLAST of Carg22241 vs. TrEMBL
Match: tr|A0A0A0KV10|A0A0A0KV10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051450 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-25
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 20  SLFPSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADFGAGLSPEISSLVKKTA 79
           SLF  KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEAD GAGLSPEISSLVKKTA
Sbjct: 99  SLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEADLGAGLSPEISSLVKKTA 158

Query: 80  SERFMPNSLRISCAL 95
           S RF PNS+ ISC L
Sbjct: 159 SGRFTPNSIGISCVL 173

[Close]

BLAST of Carg22241 vs. TrEMBL
Match: tr|A0A2P4KF80|A0A2P4KF80_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18624 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 9   KLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDGFYVFYE-VGSLSTIPEVPEADFGAGL 68
           KLSRSL K LRS+F  KP S+SS+   +DQPKDGFY  Y+  G+L+TIPE PE DF + +
Sbjct: 79  KLSRSLHKFLRSVFKPKP-SSSSVVRVQDQPKDGFYFVYDKSGALTTIPEAPEIDF-SKI 138

Query: 69  SPEISSLVKKTASERFMPNSLRISCA 94
           SPEI SLV+K+ASERF    + ISCA
Sbjct: 139 SPEIGSLVRKSASERFTATPIGISCA 162

[Close]

BLAST of Carg22241 vs. TrEMBL
Match: tr|A0A218WH47|A0A218WH47_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018057 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 5   KPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRD--QPKDGFYVFYE-VGSLSTIPEVPEA 64
           K  SK+SRSL+K++RS+F +K  S+ S+F  +   Q +DGFY+ Y+  G+L+TIPE PE 
Sbjct: 78  KKPSKISRSLNKLVRSIFRTKRGSSGSMFRVKGDRQGRDGFYILYDKSGALTTIPEAPEI 137

Query: 65  DFGAGLSPEISSLVKKTASERFMPNSLRISCA 94
           D  A LSPEI+SLV++TAS+RF   S+ ISCA
Sbjct: 138 DHLASLSPEINSLVRRTASDRFAAPSVGISCA 169

[Close]

BLAST of Carg22241 vs. TrEMBL
Match: tr|A0A2I4E815|A0A2I4E815_9ROSI (uncharacterized protein LOC108987129 OS=Juglans regia OX=51240 GN=LOC108987129 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 5   KPSSKLSRSLSKILRSLFPSKPNSNSSIFLTRDQPKDG-FYVFYE-VGSLSTIPEVPEAD 64
           K SSK+SRSL K+LRS+F  KP S +S+   ++Q K+G FYV Y+  G+L+TIPEVPE D
Sbjct: 70  KKSSKISRSLQKLLRSVFKPKPTS-TSVLNVQNQSKEGTFYVVYDKSGALNTIPEVPELD 129

Query: 65  FGAGLSPEISSLVKKTASERFMPNSLRISCA 94
           F +G+SPEI SLV K+ SERF   S+ ISC+
Sbjct: 130 F-SGISPEIGSLVGKSTSERFTATSIGISCS 158

The following BLAST results are available for this feature:

BLAST of Carg22241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451959.1	3.9e-32	83.52	PREDICTED: uncharacterized protein LOC103493107 [Cucumis melo]	[more]
XP_022942039.1	6.3e-30	80.21	uncharacterized protein LOC111447227 [Cucurbita moschata]	[more]
XP_022989197.1	6.3e-30	80.21	uncharacterized protein LOC111486340 [Cucurbita maxima]	[more]
XP_023544229.1	6.3e-30	80.21	uncharacterized protein LOC111803865 [Cucurbita pepo subsp. pepo]	[more]
XP_011654341.1	6.1e-25	81.33	PREDICTED: uncharacterized protein LOC105435347 [Cucumis sativus] >KGN53393.1 hy...	[more]

BLAST of Carg22241 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41810.1	7.4e-09	44.00	unknown protein	[more]
AT1G64340.1	2.0e-06	40.70	unknown protein	[more]

BLAST of Carg22241 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTI3\|A0A1S3BTI3_CUCME	2.6e-32	83.52	uncharacterized protein LOC103493107 OS=Cucumis melo OX=3656 GN=LOC103493107 PE=...	[more]
tr\|A0A0A0KV10\|A0A0A0KV10_CUCSA	4.0e-25	81.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051450 PE=4 SV=1	[more]
tr\|A0A2P4KF80\|A0A2P4KF80_QUESU	1.7e-15	60.47	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18624 PE=4 SV=1	[more]
tr\|A0A218WH47\|A0A218WH47_PUNGR	1.1e-14	53.26	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018057 PE=4 SV=1	[more]
tr\|A0A2I4E815\|A0A2I4E815_9ROSI	4.2e-14	57.14	uncharacterized protein LOC108987129 OS=Juglans regia OX=51240 GN=LOC108987129 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22241-RA	Carg22241-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33978	FAMILY NOT NAMED	coord: 3..92
None	No IPR available	PANTHER	PTHR33978:SF4	SUBFAMILY NOT NAMED	coord: 3..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22241	Cla010920	Watermelon (97103) v1	carwmB0589
Carg22241	Cla011381	Watermelon (97103) v1	carwmB0590
Carg22241	Csa4G051450	Cucumber (Chinese Long) v2	carcuB0617
Carg22241	MELO3C016304	Melon (DHL92) v3.5.1	carmeB0596
Carg22241	ClCG07G014930	Watermelon (Charleston Gray)	carwcgB0576
Carg22241	ClCG01G001990	Watermelon (Charleston Gray)	carwcgB0575
Carg22241	CSPI04G06260	Wild cucumber (PI 183967)	carcpiB0623
Carg22241	Cucsa.107290	Cucumber (Gy14) v1	carcgyB0663
Carg22241	CmaCh04G007010	Cucurbita maxima (Rimu)	carcmaB0826
Carg22241	CmoCh16G006060	Cucurbita moschata (Rifu)	carcmoB0803
Carg22241	CmoCh04G007440	Cucurbita moschata (Rifu)	carcmoB0804
Carg22241	Lsi07G007080	Bottle gourd (USVL1VR-Ls)	carlsiB536
Carg22241	Lsi09G001840	Bottle gourd (USVL1VR-Ls)	carlsiB534
Carg22241	Cp4.1LG14g02480	Cucurbita pepo (Zucchini)	carcpeB0838
Carg22241	Cp4.1LG01g00270	Cucurbita pepo (Zucchini)	carcpeB0839
Carg22241	CsGy4G006180	Cucumber (Gy14) v2	carcgybB0589
Carg22241	MELO3C016304.2	Melon (DHL92) v3.6.1	carmedB0603
Carg22241	CsaV3_4G006460	Cucumber (Chinese Long) v3	carcucB0624
Carg22241	Cla97C07G141870	Watermelon (97103) v2	carwmbB0617
Carg22241	Bhi01G002285	Wax gourd	carwgoB0701

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22241	Carg13059	Silver-seed gourd	carcarB049
Carg22241	Carg21271	Silver-seed gourd	carcarB384

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22241	Cucumber (Gy14) v2	carcgybB0590
Carg22241	Cucurbita maxima (Rimu)	carcmaB0824
Carg22241	Cucurbita maxima (Rimu)	carcmaB0825
Carg22241	Cucurbita moschata (Rifu)	carcmoB0802
Carg22241	Cucurbita pepo (Zucchini)	carcpeB0837
Carg22241	Wild cucumber (PI 183967)	carcpiB0624
Carg22241	Cucumber (Chinese Long) v2	carcuB0618
Carg22241	Cucumber (Chinese Long) v3	carcucB0625
Carg22241	Melon (DHL92) v3.5.1	carmeB0594
Carg22241	Melon (DHL92) v3.6.1	carmedB0601
Carg22241	Watermelon (97103) v2	carwmbB0616
Carg22241	Wax gourd	carwgoB0700